Atom Nomenclature for TJH

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for TJH

Atom Name (V3) Atom Name (V2)
OAB O1
CBB C1
CBE C2
CAH C3
CAE C4
CAF C5
CAV C6
OAC O2
CBF C7
CBA C8
OAA O3
CAJ C9
CAX C10
NAS N1
CAN C11
CAO C12
NAT N2
CAZ C13
CAY C14
CAQ C15
CAM C16
CAL C17
CAP C18
CAW C19
NAR N3
CBC C20
CBD C21
CAI C22
CAG C23
CAU C24
CL CL1
CAK C25
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22