Atom Nomenclature for TIT

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for TIT

Atom Name (V3) Atom Name (V2)
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C21 C21
C20 C20
O07 O07
BR BR
C08 C08
C07 C07
C06 C06
C05 C05
O03 O03
O04 O04
N01 N01
N04 N04
N02 N02
C02 C02
C29 C29
C30 C30
C31 C31
C32 C32
C01 C01
O01 O01
N03 N03
C04 C04
C28 C28
C03 C03
O02 O02
N05 N05
C10 C10
C17 C17
C18 C18
C19 C19
C09 C09
O05 O05
C12 C12
C16 C16
C15 C15
C13 C13
C14 C14
C11 C11
O06 O06
N06 N06
H23 H23
H24 H24
H26 H26
H27 H27
H211 1H21
H212 2H21
H201 1H20
H202 2H20
H08 H08
H07 H07
H061 1H06
H062 2H06
HA HA
H011 1H01
H012 2H01
H04 H04
H02 H02
HB HB
H291 1H29
H292 2H29
H30 H30
H311 1H31
H312 2H31
H313 3H31
H321 1H32
H322 2H32
H323 3H32
H03 H03
HC HC
H281 1H28
H282 2H28
H283 3H28
H05 H05
H10 H10
H17 H17
H181 1H18
H182 2H18
H183 3H18
H191 1H19
H192 2H19
H193 3H19
H16 H16
H15 H15
H13 H13
H14 H14