Atom Nomenclature for TIQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for TIQ

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
S4 S4
C5 C5
N6 N6
C7 C7
N8 N8
C9 C9
C11 C11
C12 C12
C14 C14
C15 C15
C16 C16
C17 C17
F18 F18
C19 C19
F20 F20
C21 C21
C22 C22
N23 N23
N24 N24
N25 N25
C26 C26
C28 C28
C29 C29
O31 O31
C32 C32
C33 C33
O34 O34
C35 C35
O37 O37
C38 C38
O40 O40
C41 C41
N42 N42
H11C H11C
H12C H12C
H13C H13C
H21C H21C
H22C H22C
H31C H31C
H32C H32C
H8 H8
H9 H9
H111 H111
H112 H112
H12 H12
H15 H15
H21 H21
H16 H16
H26 H26
H281 H281
H282 H282
H38 H38
H29 H29
H35 H35
H321 H321
H322 H322
H331 H331
H332 H332
H34 H34
H37 H37
H40 H40