PDB Chemical Component TIA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TIA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
S1 |
C2 |
1.764 |
1.708 |
S1 |
C5 |
1.771 |
1.709 |
C2 |
N3 |
1.343 |
1.287 |
C2 |
C1' |
1.486 |
1.507 |
N3 |
C4 |
1.350 |
1.335 |
C4 |
C5 |
1.373 |
1.353 |
C4 |
C6 |
1.441 |
1.472 |
C5 |
H5 |
1.080 |
1.080 |
C6 |
O6 |
1.231 |
1.217 |
C6 |
N6 |
1.358 |
1.348 |
N6 |
HN61 |
1.000 |
0.970 |
N6 |
HN62 |
1.000 |
0.969 |
C1' |
C2' |
1.492 |
1.540 |
C1' |
O4' |
1.488 |
1.438 |
C1' |
H1' |
1.100 |
1.090 |
C2' |
O2' |
1.467 |
1.428 |
C2' |
C3' |
1.551 |
1.549 |
C2' |
H2' |
1.100 |
1.090 |
O2' |
HO2' |
0.950 |
0.968 |
C3' |
O3' |
1.460 |
1.429 |
C3' |
C4' |
1.532 |
1.550 |
C3' |
H3' |
1.100 |
1.090 |
O3' |
HO3' |
0.950 |
0.967 |
C4' |
O4' |
1.441 |
1.444 |
C4' |
C5' |
1.548 |
1.530 |
C4' |
H4' |
1.101 |
1.090 |
C5' |
H5'1 |
1.100 |
1.090 |
C5' |
H5'2 |
1.100 |
1.090 |
C5' |
H5'3 |
1.100 |
1.091 |
Bond Angles for TIA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
S1 |
C5 |
92.5 |
91.1 |
S1 |
C2 |
N3 |
112.5 |
110.5 |
S1 |
C2 |
C1' |
131.8 |
124.7 |
S1 |
C5 |
C4 |
102.2 |
108.8 |
S1 |
C5 |
H5 |
128.9 |
125.6 |
N3 |
C2 |
C1' |
115.6 |
124.7 |
C2 |
N3 |
C4 |
107.9 |
115.8 |
C2 |
C1' |
C2' |
128.4 |
109.9 |
C2 |
C1' |
O4' |
106.2 |
109.8 |
C2 |
C1' |
H1' |
105.5 |
109.9 |
N3 |
C4 |
C5 |
124.9 |
113.7 |
N3 |
C4 |
C6 |
109.3 |
123.2 |
C5 |
C4 |
C6 |
125.8 |
123.2 |
C4 |
C5 |
H5 |
128.9 |
125.5 |
C4 |
C6 |
O6 |
117.1 |
120.0 |
C4 |
C6 |
N6 |
111.7 |
120.0 |
O6 |
C6 |
N6 |
131.3 |
120.0 |
C6 |
N6 |
HN61 |
120.0 |
120.0 |
C6 |
N6 |
HN62 |
120.0 |
120.0 |
HN61 |
N6 |
HN62 |
120.0 |
120.0 |
C2' |
C1' |
O4' |
104.0 |
107.3 |
C2' |
C1' |
H1' |
105.4 |
109.9 |
C1' |
C2' |
O2' |
109.2 |
110.5 |
C1' |
C2' |
C3' |
100.7 |
104.2 |
C1' |
C2' |
H2' |
111.5 |
110.5 |
O4' |
C1' |
H1' |
105.5 |
110.0 |
C1' |
O4' |
C4' |
113.2 |
107.0 |
O2' |
C2' |
C3' |
112.5 |
110.5 |
O2' |
C2' |
H2' |
111.9 |
110.5 |
C2' |
O2' |
HO2' |
109.5 |
114.0 |
C3' |
C2' |
H2' |
110.6 |
110.5 |
C2' |
C3' |
O3' |
106.3 |
110.9 |
C2' |
C3' |
C4' |
110.2 |
102.1 |
C2' |
C3' |
H3' |
111.6 |
110.9 |
O3' |
C3' |
C4' |
103.3 |
110.9 |
O3' |
C3' |
H3' |
113.1 |
110.8 |
C3' |
O3' |
HO3' |
109.5 |
114.0 |
C4' |
C3' |
H3' |
111.9 |
110.9 |
C3' |
C4' |
O4' |
100.8 |
103.5 |
C3' |
C4' |
C5' |
119.2 |
110.6 |
C3' |
C4' |
H4' |
107.0 |
110.6 |
O4' |
C4' |
C5' |
114.3 |
110.6 |
O4' |
C4' |
H4' |
108.1 |
110.7 |
C5' |
C4' |
H4' |
106.8 |
110.7 |
C4' |
C5' |
H5'1 |
109.5 |
109.5 |
C4' |
C5' |
H5'2 |
109.5 |
109.4 |
C4' |
C5' |
H5'3 |
109.5 |
109.5 |
H5'1 |
C5' |
H5'2 |
109.5 |
109.5 |
H5'1 |
C5' |
H5'3 |
109.4 |
109.5 |
H5'2 |
C5' |
H5'3 |
109.4 |
109.4 |
Torsion Angles for TIA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
S1 |
C5 |
C4 |
359.8 |
0.0 |
C2 |
S1 |
C5 |
H5 |
179.8 |
179.9 |
N3 |
C2 |
S1 |
C1' |
183.3 |
180.1 |
S1 |
C2 |
N3 |
C4 |
0.9 |
360.0 |
S1 |
C2 |
C1' |
C2' |
36.0 |
285.0 |
S1 |
C2 |
C1' |
O4' |
159.5 |
42.8 |
S1 |
C2 |
C1' |
H1' |
271.2 |
164.0 |
C5 |
S1 |
C2 |
N3 |
359.5 |
360.0 |
C5 |
S1 |
C2 |
C1' |
176.2 |
179.9 |
N3 |
C4 |
C5 |
S1 |
0.9 |
360.0 |
S1 |
C5 |
C4 |
C6 |
183.0 |
180.0 |
C4 |
C5 |
S1 |
H5 |
180.0 |
180.1 |
N3 |
C2 |
S1 |
C5 |
359.5 |
360.0 |
S1 |
C2 |
N3 |
C1' |
177.2 |
179.9 |
N3 |
C2 |
C1' |
C2' |
212.6 |
105.0 |
N3 |
C2 |
C1' |
O4' |
336.1 |
222.8 |
N3 |
C2 |
C1' |
H1' |
87.8 |
343.9 |
C2 |
N3 |
C4 |
C5 |
358.7 |
0.0 |
C2 |
N3 |
C4 |
C6 |
176.9 |
180.0 |
C1' |
C2 |
S1 |
C5 |
176.2 |
179.9 |
S1 |
C2 |
C1' |
N3 |
183.4 |
180.1 |
C1' |
C2 |
N3 |
C4 |
183.7 |
180.0 |
C2' |
C1' |
C2 |
O4' |
236.5 |
242.2 |
C2' |
C1' |
C2 |
H1' |
124.8 |
121.0 |
C2 |
C1' |
C2' |
O2' |
274.9 |
240.1 |
C2 |
C1' |
C2' |
C3' |
156.4 |
121.4 |
C2 |
C1' |
C2' |
H2' |
39.1 |
2.7 |
O4' |
C1' |
C2 |
H1' |
248.3 |
238.9 |
C2 |
C1' |
O4' |
C4' |
191.8 |
214.0 |
S1 |
C5 |
C4 |
N3 |
0.9 |
360.0 |
C4 |
N3 |
C2 |
C1' |
183.7 |
180.0 |
C5 |
C4 |
N3 |
C6 |
181.8 |
180.0 |
N3 |
C4 |
C5 |
H5 |
180.9 |
180.0 |
N3 |
C4 |
C6 |
O6 |
182.9 |
180.0 |
N3 |
C4 |
C6 |
N6 |
2.9 |
360.0 |
S1 |
C5 |
C4 |
H5 |
180.0 |
179.9 |
N3 |
C4 |
C5 |
C6 |
177.9 |
180.0 |
C5 |
C4 |
C6 |
O6 |
1.0 |
360.0 |
C5 |
C4 |
C6 |
N6 |
181.1 |
180.0 |
N3 |
C4 |
C6 |
C5 |
181.8 |
180.0 |
C6 |
C4 |
C5 |
H5 |
3.0 |
0.1 |
O6 |
C6 |
C4 |
N6 |
180.0 |
180.0 |
C4 |
C6 |
N6 |
HN61 |
180.0 |
0.0 |
C4 |
C6 |
N6 |
HN62 |
360.0 |
180.0 |
S1 |
C5 |
H5 |
C4 |
180.0 |
180.1 |
H5 |
C5 |
C4 |
C6 |
3.0 |
0.1 |
C4 |
C6 |
O6 |
N6 |
180.0 |
180.0 |
O6 |
C6 |
N6 |
HN61 |
0.0 |
180.0 |
O6 |
C6 |
N6 |
HN62 |
180.0 |
360.0 |
C4 |
C6 |
N6 |
O6 |
180.0 |
180.0 |
HN61 |
N6 |
C6 |
HN62 |
180.0 |
180.0 |
C6 |
N6 |
HN61 |
HN62 |
180.0 |
180.0 |
C6 |
N6 |
HN62 |
HN61 |
180.0 |
180.0 |
C2 |
C1' |
C2' |
O4' |
124.4 |
119.4 |
C2 |
C1' |
C2' |
H1' |
235.1 |
239.0 |
O4' |
C1' |
C2' |
H1' |
110.7 |
119.6 |
C2' |
C1' |
O4' |
C4' |
329.4 |
333.4 |
O2' |
C2' |
C1' |
C3' |
118.5 |
118.7 |
O2' |
C2' |
C1' |
H2' |
235.8 |
237.4 |
C1' |
C2' |
O2' |
HO2' |
180.0 |
61.5 |
C3' |
C2' |
C1' |
H2' |
117.3 |
118.7 |
C1' |
C2' |
C3' |
O3' |
85.2 |
139.1 |
C1' |
C2' |
C3' |
C4' |
333.9 |
20.9 |
C1' |
C2' |
C3' |
H3' |
208.8 |
262.7 |
C2 |
C1' |
O4' |
C2' |
222.4 |
240.6 |
C2 |
C1' |
O4' |
H1' |
111.7 |
121.1 |
C2' |
C1' |
O4' |
H1' |
249.3 |
240.5 |
O4' |
C1' |
C2' |
O2' |
150.5 |
120.7 |
O4' |
C1' |
C2' |
C3' |
32.0 |
2.0 |
O4' |
C1' |
C2' |
H2' |
274.7 |
243.3 |
C3' |
C4' |
O4' |
C1' |
13.1 |
40.1 |
C1' |
O4' |
C4' |
C5' |
142.3 |
158.5 |
C1' |
O4' |
C4' |
H4' |
261.1 |
281.6 |
C2 |
C1' |
H1' |
C2' |
138.1 |
121.0 |
C2 |
C1' |
H1' |
O4' |
247.8 |
238.9 |
C2' |
C1' |
H1' |
O4' |
109.7 |
117.9 |
H1' |
C1' |
C2' |
O2' |
39.8 |
1.1 |
H1' |
C1' |
C2' |
C3' |
281.3 |
242.4 |
H1' |
C1' |
C2' |
H2' |
163.9 |
123.7 |
H1' |
C1' |
O4' |
C4' |
80.1 |
93.0 |
O2' |
C2' |
C1' |
O4' |
150.5 |
120.7 |
O2' |
C2' |
C1' |
H1' |
39.8 |
1.1 |
C1' |
C2' |
O2' |
C3' |
249.2 |
245.2 |
C1' |
C2' |
O2' |
H2' |
123.9 |
122.6 |
C3' |
C2' |
O2' |
H2' |
234.7 |
237.4 |
O2' |
C2' |
C3' |
O3' |
329.1 |
20.4 |
O2' |
C2' |
C3' |
C4' |
217.8 |
262.2 |
O2' |
C2' |
C3' |
H3' |
92.8 |
144.0 |
C3' |
C2' |
C1' |
O4' |
32.0 |
2.0 |
C3' |
C2' |
C1' |
H1' |
281.3 |
242.4 |
C1' |
C2' |
C3' |
O2' |
116.1 |
118.7 |
C1' |
C2' |
C3' |
H2' |
242.0 |
241.3 |
O2' |
C2' |
C3' |
H2' |
125.9 |
122.6 |
C3' |
C2' |
O2' |
HO2' |
290.9 |
176.3 |
O3' |
C3' |
C2' |
C4' |
111.3 |
118.2 |
O3' |
C3' |
C2' |
H3' |
236.3 |
236.4 |
C2' |
C3' |
O3' |
HO3' |
180.0 |
180.0 |
C4' |
C3' |
C2' |
H3' |
125.0 |
118.2 |
C2' |
C3' |
C4' |
O4' |
8.7 |
322.9 |
C2' |
C3' |
C4' |
C5' |
242.8 |
204.5 |
C2' |
C3' |
C4' |
H4' |
121.6 |
81.5 |
H2' |
C2' |
C1' |
O4' |
274.7 |
243.3 |
H2' |
C2' |
C1' |
H1' |
163.9 |
123.7 |
C1' |
C2' |
H2' |
O2' |
237.4 |
237.4 |
C1' |
C2' |
H2' |
C3' |
111.1 |
114.8 |
O2' |
C2' |
H2' |
C3' |
233.7 |
237.4 |
H2' |
C2' |
O2' |
HO2' |
56.1 |
298.9 |
H2' |
C2' |
C3' |
O3' |
203.1 |
257.8 |
H2' |
C2' |
C3' |
C4' |
91.8 |
139.6 |
H2' |
C2' |
C3' |
H3' |
326.8 |
21.4 |
HO2' |
O2' |
C2' |
C3' |
290.9 |
176.3 |
HO2' |
O2' |
C2' |
H2' |
56.1 |
298.9 |
O3' |
C3' |
C2' |
H2' |
203.1 |
257.8 |
C2' |
C3' |
O3' |
C4' |
244.0 |
247.3 |
C2' |
C3' |
O3' |
H3' |
122.8 |
123.7 |
C4' |
C3' |
O3' |
H3' |
238.8 |
236.4 |
O3' |
C3' |
C4' |
O4' |
255.5 |
204.7 |
O3' |
C3' |
C4' |
C5' |
129.6 |
86.3 |
O3' |
C3' |
C4' |
H4' |
8.4 |
323.3 |
C1' |
O4' |
C4' |
C3' |
13.1 |
40.1 |
C4' |
C3' |
C2' |
H2' |
91.8 |
139.6 |
C2' |
C3' |
C4' |
O3' |
113.2 |
118.2 |
C2' |
C3' |
C4' |
H3' |
235.1 |
241.8 |
O3' |
C3' |
C4' |
H3' |
121.9 |
123.6 |
C4' |
C3' |
O3' |
HO3' |
296.0 |
292.7 |
O4' |
C4' |
C3' |
C5' |
125.9 |
118.4 |
O4' |
C4' |
C3' |
H4' |
247.1 |
241.4 |
C5' |
C4' |
C3' |
H4' |
121.2 |
123.0 |
C3' |
C4' |
C5' |
H5'1 |
180.0 |
60.0 |
C3' |
C4' |
C5' |
H5'2 |
300.0 |
180.0 |
C3' |
C4' |
C5' |
H5'3 |
60.0 |
299.9 |
H3' |
C3' |
C2' |
H2' |
326.8 |
21.4 |
C2' |
C3' |
H3' |
O3' |
240.2 |
236.3 |
C2' |
C3' |
H3' |
C4' |
124.0 |
112.7 |
O3' |
C3' |
H3' |
C4' |
243.8 |
236.4 |
H3' |
C3' |
O3' |
HO3' |
57.2 |
56.3 |
H3' |
C3' |
C4' |
O4' |
133.6 |
81.2 |
H3' |
C3' |
C4' |
C5' |
7.6 |
322.7 |
H3' |
C3' |
C4' |
H4' |
246.5 |
199.7 |
HO3' |
O3' |
C3' |
C4' |
296.0 |
292.7 |
HO3' |
O3' |
C3' |
H3' |
57.2 |
56.3 |
C4' |
O4' |
C1' |
H1' |
80.1 |
93.0 |
O4' |
C4' |
C3' |
H3' |
133.6 |
81.2 |
C3' |
C4' |
O4' |
C5' |
230.8 |
241.6 |
C3' |
C4' |
O4' |
H4' |
112.1 |
118.5 |
C5' |
C4' |
O4' |
H4' |
241.2 |
237.0 |
O4' |
C4' |
C5' |
H5'1 |
60.7 |
306.0 |
O4' |
C4' |
C5' |
H5'2 |
180.7 |
66.0 |
O4' |
C4' |
C5' |
H5'3 |
300.7 |
185.9 |
C5' |
C4' |
C3' |
H3' |
7.6 |
322.7 |
C3' |
C4' |
C5' |
O4' |
119.3 |
114.0 |
C3' |
C4' |
C5' |
H4' |
238.8 |
237.0 |
O4' |
C4' |
C5' |
H4' |
119.5 |
123.0 |
H5'1 |
C5' |
C4' |
H5'2 |
240.0 |
240.0 |
H5'1 |
C5' |
C4' |
H5'3 |
120.0 |
120.0 |
H5'2 |
C5' |
C4' |
H5'3 |
240.0 |
240.1 |
H4' |
C4' |
C3' |
H3' |
246.5 |
199.7 |
C3' |
C4' |
H4' |
O4' |
252.1 |
245.9 |
C3' |
C4' |
H4' |
C5' |
128.7 |
122.9 |
O4' |
C4' |
H4' |
C5' |
236.6 |
237.0 |
H4' |
C4' |
C5' |
H5'1 |
301.2 |
182.9 |
H4' |
C4' |
C5' |
H5'2 |
61.3 |
303.0 |
H4' |
C4' |
C5' |
H5'3 |
181.2 |
62.9 |
H5'1 |
C5' |
C4' |
H4' |
301.2 |
182.9 |
C4' |
C5' |
H5'1 |
H5'2 |
120.0 |
120.0 |
C4' |
C5' |
H5'1 |
H5'3 |
240.0 |
240.0 |
H5'2 |
C5' |
H5'1 |
H5'3 |
120.0 |
120.0 |
H5'2 |
C5' |
C4' |
H4' |
61.3 |
303.0 |
C4' |
C5' |
H5'2 |
H5'1 |
240.0 |
240.0 |
C4' |
C5' |
H5'2 |
H5'3 |
120.0 |
119.9 |
H5'1 |
C5' |
H5'2 |
H5'3 |
240.0 |
240.0 |
H5'3 |
C5' |
C4' |
H4' |
181.2 |
62.9 |
C4' |
C5' |
H5'3 |
H5'1 |
120.0 |
120.0 |
C4' |
C5' |
H5'3 |
H5'2 |
240.0 |
240.1 |
H5'1 |
C5' |
H5'3 |
H5'2 |
120.0 |
120.0 |