PDB Chemical Component THS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for THS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.669 1.480
P S2P 1.953 2.120
P S3P 1.954 2.120
P O5' 1.615 1.610
S2P HSP2 0.951 1.346
S3P HSP3 0.951 1.344
O5' C5' 1.422 1.427
C5' C4' 1.489 1.530
C5' H5'1 1.114 1.090
C5' H5'2 1.115 1.091
C4' O4' 1.405 1.445
C4' C3' 1.533 1.549
C4' H4' 1.115 1.090
O4' C1' 1.453 1.437
C3' O3' 1.409 1.428
C3' C2' 1.511 1.548
C3' H3' 1.115 1.090
O3' HO3' 0.949 0.966
C2' C1' 1.524 1.541
C2' H2'1 1.115 1.090
C2' H2'2 1.114 1.089
C1' N1 1.501 1.465
C1' H1' 1.115 1.091
N1 C2 1.417 1.344
N1 C6 1.379 1.368
C2 O2 1.244 1.215
C2 N3 1.377 1.346
N3 C4 1.368 1.349
N3 HN3 1.021 0.969
C4 O4 1.235 1.218
C4 C5 1.450 1.415
C5 C5M 1.530 1.507
C5 C6 1.354 1.350
C5M HM51 1.114 1.091
C5M HM52 1.115 1.090
C5M HM53 1.116 1.090
C6 H6 1.102 1.079

Bond Angles for THS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P S2P 110.8 109.5
O1P P S3P 111.5 109.5
O1P P O5' 101.1 109.5
S2P P S3P 119.4 109.4
S2P P O5' 104.5 109.5
P S2P HSP2 110.8 100.0
S3P P O5' 107.6 109.5
P S3P HSP3 111.5 100.0
P O5' C5' 119.0 106.8
O5' C5' C4' 108.1 109.5
O5' C5' H5'1 112.8 109.5
O5' C5' H5'2 112.7 109.5
C4' C5' H5'1 112.7 109.4
C4' C5' H5'2 112.7 109.4
C5' C4' O4' 108.9 110.8
C5' C4' C3' 115.4 110.6
C5' C4' H4' 104.5 110.5
H5'1 C5' H5'2 97.7 109.5
O4' C4' C3' 104.9 103.6
O4' C4' H4' 115.0 110.5
C4' O4' C1' 112.8 106.9
C3' C4' H4' 108.5 110.5
C4' C3' O3' 99.7 111.1
C4' C3' C2' 107.9 102.1
C4' C3' H3' 117.3 110.9
O4' C1' C2' 107.1 107.4
O4' C1' N1 110.4 109.9
O4' C1' H1' 112.5 109.9
O3' C3' C2' 111.8 110.9
O3' C3' H3' 113.7 110.7
C3' O3' HO3' 99.8 107.0
C2' C3' H3' 106.3 110.9
C3' C2' C1' 102.5 104.2
C3' C2' H2'1 114.9 110.4
C3' C2' H2'2 114.8 110.6
C1' C2' H2'1 114.8 110.5
C1' C2' H2'2 114.8 110.5
C2' C1' N1 115.1 109.9
C2' C1' H1' 107.7 109.8
H2'1 C2' H2'2 95.7 110.5
N1 C1' H1' 104.1 109.9
C1' N1 C2 114.8 119.7
C1' N1 C6 123.2 119.7
C2 N1 C6 121.7 120.6
N1 C2 O2 123.9 119.5
N1 C2 N3 115.4 120.9
N1 C6 C5 119.9 119.6
N1 C6 H6 120.9 120.2
O2 C2 N3 120.6 119.5
C2 N3 C4 126.6 120.2
C2 N3 HN3 117.1 119.8
C4 N3 HN3 116.3 119.9
N3 C4 O4 119.2 120.3
N3 C4 C5 114.5 119.4
O4 C4 C5 126.3 120.3
C4 C5 C5M 116.9 120.5
C4 C5 C6 121.9 119.1
C5M C5 C6 121.2 120.4
C5 C5M HM51 116.9 109.5
C5 C5M HM52 109.5 109.5
C5 C5M HM53 109.5 109.5
C5 C6 H6 119.2 120.2
HM51 C5M HM52 109.6 109.5
HM51 C5M HM53 109.6 109.4
HM52 C5M HM53 100.6 109.5

Torsion Angles for THS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
S2P P O1P S3P 224.4 119.9
S2P P O1P O5' 110.4 240.0
O1P P S2P HSP2 180.0 300.0
S3P P O1P O5' 245.9 120.0
O1P P S3P HSP3 180.0 180.0
O1P P O5' C5' 292.0 60.0
O1P P S2P S3P 131.6 240.0
O1P P S2P O5' 251.9 120.0
S3P P S2P O5' 120.2 240.0
S2P P S3P HSP3 311.3 60.0
S2P P O5' C5' 176.9 180.0
O1P P S3P S2P 228.7 120.0
O1P P S3P O5' 110.0 240.0
S2P P S3P O5' 241.3 120.0
S3P P S2P HSP2 48.4 60.0
S3P P O5' C5' 49.0 300.0
O1P P O5' S2P 115.1 240.0
O1P P O5' S3P 243.0 120.0
S2P P O5' S3P 127.9 240.0
O5' P S2P HSP2 288.2 180.0
O5' P S3P HSP3 70.0 300.0
P O5' C5' C4' 224.1 180.0
P O5' C5' H5'1 349.4 60.0
P O5' C5' H5'2 98.9 300.0
HSP2 S2P P S3P 48.4 60.0
HSP2 S2P P O5' 288.2 180.0
HSP3 S3P P O5' 70.0 300.0
C4' C5' O5' H5'1 234.7 120.0
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' O4' 301.6 65.7
O5' C5' C4' C3' 59.2 180.0
O5' C5' C4' H4' 178.2 302.8
H5'1 C5' O5' H5'2 250.5 120.0
O5' C5' C4' H5'1 125.3 239.9
O5' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.4 240.0
O4' C4' C5' C3' 242.4 245.7
O4' C4' C5' H4' 123.4 122.9
C5' C4' O4' C1' 119.6 158.5
C3' C4' C5' H4' 241.0 237.2
C5' C4' C3' O3' 140.3 86.1
C5' C4' C3' C2' 257.1 204.3
C5' C4' C3' H3' 17.0 322.5
O5' C5' H5'1 C4' 237.3 120.0
O5' C5' H5'1 H5'2 118.7 240.0
C4' C5' H5'1 H5'2 241.4 119.9
H5'1 C5' C4' O4' 176.3 185.8
H5'1 C5' C4' C3' 293.9 300.1
H5'1 C5' C4' H4' 52.9 62.9
O5' C5' H5'2 C4' 122.7 240.0
O5' C5' H5'2 H5'1 241.3 120.1
C4' C5' H5'2 H5'1 118.6 240.1
H5'2 C5' C4' O4' 66.8 305.7
H5'2 C5' C4' C3' 184.5 60.1
H5'2 C5' C4' H4' 303.5 182.8
O4' C4' C5' H5'1 176.3 185.8
O4' C4' C5' H5'2 66.8 305.7
C5' C4' O4' C3' 124.1 118.7
C5' C4' O4' H4' 243.2 237.1
C3' C4' O4' H4' 119.1 118.5
O4' C4' C3' O3' 260.1 204.8
O4' C4' C3' C2' 16.9 323.1
O4' C4' C3' H3' 136.9 81.3
C4' O4' C1' C2' 350.6 333.7
C4' O4' C1' N1 224.6 214.2
C4' O4' C1' H1' 108.8 93.1
C3' C4' C5' H5'1 293.9 300.1
C3' C4' C5' H5'2 184.5 60.1
C5' C4' C3' O4' 240.2 241.2
C5' C4' C3' H4' 116.8 122.8
O4' C4' C3' H4' 236.6 241.5
C3' C4' O4' C1' 355.5 39.9
O3' C3' C4' C2' 243.2 241.7
O3' C3' C4' H3' 123.2 123.6
C4' C3' O3' HO3' 180.0 174.2
C2' C3' C4' H3' 240.1 241.8
C4' C3' C2' C1' 338.2 20.8
C4' C3' C2' H2'1 103.4 262.2
C4' C3' C2' H2'2 213.0 139.5
H4' C4' C5' H5'1 52.9 62.9
H4' C4' C5' H5'2 303.5 182.8
C5' C4' H4' O4' 119.3 123.0
C5' C4' H4' C3' 236.4 237.2
O4' C4' H4' C3' 117.1 114.1
H4' C4' O4' C1' 236.4 281.4
H4' C4' C3' O3' 23.5 323.3
H4' C4' C3' C2' 140.3 81.5
H4' C4' C3' H3' 260.3 199.7
C1' O4' C4' C3' 355.5 39.9
C1' O4' C4' H4' 236.4 281.4
C3' C2' C1' O4' 19.0 2.0
O4' C1' C2' H2'1 253.7 120.6
O4' C1' C2' H2'2 144.2 243.2
C2' C1' O4' N1 126.0 119.5
C2' C1' O4' H1' 241.8 240.6
N1 C1' O4' H1' 115.9 121.0
O4' C1' N1 C2 243.1 58.3
O4' C1' N1 C6 57.1 238.3
O3' C3' C4' H4' 23.5 323.3
C4' C3' O3' C2' 113.9 112.8
C4' C3' O3' H3' 234.3 236.3
C2' C3' O3' H3' 120.4 123.5
O3' C3' C2' C1' 86.9 139.2
O3' C3' C2' H2'1 212.1 20.5
O3' C3' C2' H2'2 321.7 257.9
C2' C3' C4' H4' 140.3 81.5
C4' C3' C2' O3' 251.3 241.6
C4' C3' C2' H3' 126.6 118.2
O4' C1' C2' C3' 19.0 2.0
O3' C3' C2' H3' 235.3 236.6
C2' C3' O3' HO3' 66.1 61.4
C1' C2' C3' H2'1 234.8 118.7
C1' C2' C3' H2'2 125.2 241.3
C3' C2' C1' N1 142.1 121.5
C3' C2' C1' H1' 257.7 242.5
H2'1 C2' C3' H2'2 250.4 122.7
H3' C3' C4' H4' 260.3 199.7
C4' C3' H3' O3' 115.8 123.8
C4' C3' H3' C2' 239.2 247.3
O3' C3' H3' C2' 123.5 123.5
H3' C3' O3' HO3' 305.7 297.9
H3' C3' C2' C1' 211.5 262.6
H3' C3' C2' H2'1 336.8 144.0
H3' C3' C2' H2'2 86.3 21.3
HO3' O3' C3' C2' 66.1 61.4
HO3' O3' C3' H3' 305.7 297.9
O4' C1' C2' N1 236.9 240.5
O4' C1' C2' H1' 121.3 119.5
C1' C2' C3' H3' 211.5 262.6
C3' C2' C1' H2'1 125.3 241.4
C3' C2' C1' H2'2 234.8 118.7
H2'1 C2' C1' H2'2 109.5 237.4
N1 C1' C2' H1' 244.4 239.0
C2' C1' N1 C2 121.7 300.3
C2' C1' N1 C6 295.7 120.3
H2'1 C2' C3' H3' 336.8 144.0
C3' C2' H2'1 C1' 241.5 114.7
C3' C2' H2'1 H2'2 120.7 237.3
C1' C2' H2'1 H2'2 239.3 122.6
H2'1 C2' C1' N1 16.8 240.1
H2'1 C2' C1' H1' 132.4 1.1
H2'2 C2' C3' H3' 86.3 21.3
C3' C2' H2'2 C1' 118.5 245.2
C3' C2' H2'2 H2'1 239.2 122.6
C1' C2' H2'2 H2'1 120.7 237.4
H2'2 C2' C1' N1 267.3 2.8
H2'2 C2' C1' H1' 22.9 123.8
O4' C1' N1 C2' 121.4 118.0
O4' C1' N1 H1' 239.0 239.0
N1 C1' C2' H2'1 16.8 240.1
N1 C1' C2' H2'2 267.3 2.8
C2' C1' N1 H1' 117.6 121.0
C2 N1 C1' C6 186.0 180.1
C1' N1 C2 O2 353.6 359.9
C1' N1 C2 N3 174.6 180.0
C1' N1 C6 C5 186.5 180.0
C1' N1 C6 H6 6.5 0.1
O4' C1' H1' C2' 242.2 242.0
O4' C1' H1' N1 119.6 121.1
H1' C1' C2' H2'1 132.4 1.1
H1' C1' C2' H2'2 22.9 123.8
C2' C1' H1' N1 237.4 239.0
H1' C1' N1 C2 4.1 179.4
H1' C1' N1 C6 178.1 359.3
C2 N1 C1' H1' 4.1 179.4
C1' N1 C2 C6 174.1 179.9
C2 N1 C6 C5 0.1 359.9
C2 N1 C6 H6 180.1 180.1
O2 C2 N1 N3 179.1 179.9
N1 C2 N3 C4 358.9 359.8
N1 C2 N3 HN3 179.0 180.0
C6 N1 C1' H1' 178.1 359.3
C1' N1 C6 C2 186.4 180.1
C6 N1 C2 O2 179.5 180.0
C6 N1 C2 N3 0.4 0.1
C4 C5 C6 N1 359.9 0.3
C5M C5 C6 N1 180.6 180.0
C5 C6 N1 H6 180.0 179.8
O2 C2 N1 C6 179.5 180.0
N1 C2 O2 N3 181.0 180.1
O2 C2 N3 C4 179.8 179.8
O2 C2 N3 HN3 359.9 0.1
N3 C2 N1 C6 0.4 0.1
N1 C2 N3 O2 179.1 179.9
C4 N3 C2 HN3 180.0 179.8
C2 N3 C4 O4 181.2 180.0
C2 N3 C4 C5 1.0 0.4
C2 N3 C4 HN3 180.0 180.3
O4 C4 N3 C5 180.2 179.6
N3 C4 C5 C5M 179.0 179.8
N3 C4 C5 C6 359.6 359.5
C2 N3 HN3 C4 180.0 179.8
HN3 N3 C4 O4 1.1 359.8
HN3 N3 C4 C5 181.0 180.2
O4 C4 N3 HN3 1.1 359.8
N3 C4 O4 C5 179.8 180.4
O4 C4 C5 C5M 358.8 0.2
O4 C4 C5 C6 179.5 179.9
N1 C6 C5 C4 359.9 0.3
C5 C4 N3 HN3 181.0 180.2
N3 C4 C5 O4 180.2 179.6
C5M C5 C4 C6 179.3 180.3
C4 C5 C5M HM51 180.0 359.7
C4 C5 C5M HM52 305.3 119.7
C4 C5 C5M HM53 54.7 239.8
C4 C5 C6 H6 179.8 180.1
N1 C6 C5 C5M 180.6 180.0
C4 C5 C5M C6 180.7 179.7
C5M C5 C6 H6 0.5 359.8
HM51 C5M C5 HM52 234.7 240.0
HM51 C5M C5 HM53 125.3 119.9
HM52 C5M C5 HM53 250.6 240.0
N1 C6 C5 H6 180.0 180.2
C4 C5 C6 C5M 179.3 180.3
C6 C5 C5M HM51 359.3 180.0
C6 C5 C5M HM52 124.6 300.0
C6 C5 C5M HM53 234.1 60.1
HM51 C5M C5 C6 359.3 180.0
C5 C5M HM51 HM52 125.3 120.1
C5 C5M HM51 HM53 234.8 240.0
HM52 C5M HM51 HM53 109.5 120.0
HM52 C5M C5 C6 124.6 300.0
C5 C5M HM52 HM51 230.6 240.0
C5 C5M HM52 HM53 115.2 120.0
HM51 C5M HM52 HM53 244.6 240.0
HM53 C5M C5 C6 234.1 60.1
C5 C5M HM53 HM51 129.4 120.0
C5 C5M HM53 HM52 244.8 239.9
HM51 C5M HM53 HM52 115.4 120.0
N1 C6 H6 C5 180.0 179.8