PDB Chemical Component THP

Ideal Model

Chemical Description

Name THYMIDINE-3',5'-DIPHOSPHATE
Formula C10 H16 N2 O11 P2
Formal charge 0
Molecular weight 402.188 g/mol
Component type DNA LINKING

Chemical features

Atom count 41
Chiral atom count 3
Chiral atoms C4' C3' C1'
Bond count 42
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) thymidine 3',5'-bis(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-3-phosphonooxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@H]2C[C@H](O[P](O)(O)=O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2C[CH](O[P](O)(O)=O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)OP(=O)(O)O
InChI descriptor InChI=1S/C10H16N2O11P2/c1-5-3-12(10(14)11-9(5)13)8-2-6(23-25(18,19)20)7(22-8)4-21-24(15,16)17/h3,6-8H,2,4H2,1H3,(H,11,13,14)(H2,15,16,17)(H2,18,19,20)/t6-,7+,8+/m0/s1
InChIKey descriptor CSNCBOPUCJOHLS-XLPZGREQSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Replaces PTP
Model PDB code 1STG
Processing site EBI