PDB Chemical Component THG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for THG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N3 C2 1.407 1.361
N3 C4 1.398 1.350
N3 HN3 1.020 0.970
C2 N1 1.331 1.315
C2 N2 1.391 1.372
N1 C8A 1.346 1.338
C8A C4A 1.390 1.387
C8A N8 1.400 1.386
C4A C4 1.409 1.399
C4A N5 1.419 1.412
C4 O4 1.245 1.221
N8 C7 1.484 1.469
N8 HN8 1.019 0.970
C7 C6 1.541 1.536
C7 HC71 1.115 1.089
C7 HC72 1.115 1.090
C6 N5 1.472 1.471
C6 C9 1.511 1.530
C6 HC6 1.115 1.089
N5 HN5 1.021 0.970
C9 N10 1.485 1.465
C9 HC91 1.115 1.090
C9 HC92 1.114 1.089
N10 C4' 1.420 1.390
N10 H10 1.020 0.969
C4' C3' 1.417 1.392
C4' C5' 1.414 1.392
C3' C2' 1.400 1.375
C3' HC3 1.103 1.079
C2' C1' 1.417 1.399
C2' HC2 1.103 1.080
C1' C6' 1.410 1.397
C1' C11 1.467 1.475
C6' C5' 1.392 1.376
C6' HC61 1.103 1.080
C5' HC5 1.103 1.079
C11 N 1.377 1.348
C11 O11 1.244 1.216
N CA 1.474 1.465
N HN 1.020 0.969
CA C 1.513 1.506
CA CB 1.545 1.529
CA HCA 1.115 1.089
C OX2 1.237 1.342
C OX1 1.236 1.208
OX2 HX2 0.950 0.968
CB CG 1.542 1.529
CB HCB1 1.115 1.089
CB HCB2 1.115 1.090
CG CD 1.517 1.507
CG HCG1 1.115 1.089
CG HCG2 1.115 1.090
CD OE1 1.240 1.208
CD OE2 1.242 1.342
OE2 HE2 0.950 0.966
N2 HN21 1.020 0.969
N2 HN22 1.020 0.970

Bond Angles for THG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N3 C4 121.2 120.1
C2 N3 HN3 119.7 119.9
N3 C2 N1 122.3 121.6
N3 C2 N2 115.8 119.2
C4 N3 HN3 119.1 120.0
N3 C4 C4A 114.5 118.5
N3 C4 O4 119.3 120.7
N1 C2 N2 121.9 119.2
C2 N1 C8A 118.2 121.0
C2 N2 HN21 109.9 120.0
C2 N2 HN22 115.8 120.0
N1 C8A C4A 122.1 119.6
N1 C8A N8 117.2 120.5
C4A C8A N8 120.7 119.8
C8A C4A C4 121.5 119.1
C8A C4A N5 121.1 120.1
C8A N8 C7 119.8 119.1
C8A N8 HN8 108.5 120.5
C4 C4A N5 117.4 120.8
C4A C4 O4 126.2 120.8
C4A N5 C6 118.2 118.5
C4A N5 HN5 109.1 120.8
C7 N8 HN8 108.5 120.4
N8 C7 C6 112.3 108.3
N8 C7 HC71 111.2 109.7
N8 C7 HC72 111.1 109.7
C6 C7 HC71 111.1 109.7
C6 C7 HC72 111.1 109.7
C7 C6 N5 110.5 108.0
C7 C6 C9 111.9 109.7
C7 C6 HC6 105.7 109.8
HC71 C7 HC72 99.2 109.7
N5 C6 C9 104.7 109.7
N5 C6 HC6 112.8 109.8
C6 N5 HN5 109.0 120.7
C9 C6 HC6 111.4 109.7
C6 C9 N10 105.5 109.5
C6 C9 HC91 113.7 109.5
C6 C9 HC92 113.7 109.5
N10 C9 HC91 113.7 109.5
N10 C9 HC92 113.7 109.5
C9 N10 C4' 118.9 120.0
C9 N10 H10 108.9 119.9
HC91 C9 HC92 96.8 109.5
C4' N10 H10 108.8 120.1
N10 C4' C3' 118.9 119.9
N10 C4' C5' 120.3 119.9
C3' C4' C5' 120.8 120.2
C4' C3' C2' 119.4 120.1
C4' C3' HC3 120.9 120.0
C4' C5' C6' 119.3 120.0
C4' C5' HC5 121.1 120.0
C2' C3' HC3 119.7 120.0
C3' C2' C1' 119.1 119.9
C3' C2' HC2 119.9 120.1
C1' C2' HC2 121.0 120.0
C2' C1' C6' 120.9 119.8
C2' C1' C11 121.6 120.1
C6' C1' C11 117.5 120.1
C1' C6' C5' 119.9 120.0
C1' C6' HC61 120.7 120.0
C1' C11 N 116.7 120.0
C1' C11 O11 122.5 120.0
C5' C6' HC61 119.4 120.0
C6' C5' HC5 119.6 120.0
N C11 O11 120.8 120.0
C11 N CA 119.8 120.0
C11 N HN 116.7 120.0
CA N HN 123.5 120.0
N CA C 110.7 109.4
N CA CB 110.1 109.5
N CA HCA 108.8 109.5
C CA CB 111.3 109.5
C CA HCA 107.5 109.4
CA C OX2 119.0 120.0
CA C OX1 117.2 120.1
CB CA HCA 108.3 109.5
CA CB CG 111.9 109.5
CA CB HCB1 111.3 109.5
CA CB HCB2 111.3 109.4
OX2 C OX1 123.8 119.9
C OX2 HX2 119.0 120.0
CG CB HCB1 111.3 109.5
CG CB HCB2 111.3 109.5
CB CG CD 111.2 109.5
CB CG HCG1 111.6 109.5
CB CG HCG2 111.6 109.5
HCB1 CB HCB2 99.1 109.5
CD CG HCG1 111.6 109.4
CD CG HCG2 111.6 109.5
CG CD OE1 118.8 120.0
CG CD OE2 116.8 120.0
HCG1 CG HCG2 98.8 109.5
OE1 CD OE2 124.4 120.0
CD OE2 HE2 116.9 120.1
HN21 N2 HN22 109.9 120.0

Torsion Angles for THG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4 N3 C2 HN3 180.0 179.6
C2 N3 C4 C4A 355.6 0.4
C2 N3 C4 O4 176.1 180.2
N1 C2 N3 N2 179.6 179.8
N3 C2 N1 C8A 359.9 0.3
N3 C2 N2 HN21 54.7 179.7
N3 C2 N2 HN22 180.0 359.5
C2 N3 C4 HN3 180.0 180.4
C4 N3 C2 N1 1.7 359.6
C4 N3 C2 N2 182.0 179.8
C8A C4A C4 N3 6.1 359.7
N3 C4 C4A N5 185.4 179.7
C4A C4 N3 O4 179.5 180.2
C2 N3 HN3 C4 180.0 179.6
HN3 N3 C2 N1 181.7 180.0
HN3 N3 C2 N2 2.1 0.3
HN3 N3 C4 C4A 175.5 180.0
HN3 N3 C4 O4 356.1 359.8
N1 C2 N3 C4 1.7 359.6
N1 C2 N3 HN3 181.7 180.0
N3 C2 N1 N2 180.4 180.2
N1 C2 N2 HN21 235.1 359.9
N1 C2 N2 HN22 0.4 179.7
C2 N1 C8A C4A 1.8 359.9
C2 N1 C8A N8 181.8 179.7
N2 C2 N3 C4 182.0 179.8
N2 C2 N3 HN3 2.1 0.3
N3 C2 N2 N1 179.6 179.8
N2 C2 N1 C8A 179.4 180.1
HN21 N2 C2 HN22 234.7 180.2
C8A N1 C2 N2 179.4 180.1
C4A C8A N1 N8 180.0 180.2
N1 C8A C4A C4 355.0 0.2
N1 C8A C4A N5 175.6 180.2
N1 C8A N8 C7 175.9 162.9
N1 C8A N8 HN8 50.6 343.0
N3 C4 C4A C8A 6.1 359.7
N1 C8A C4A N8 180.0 179.8
C4A C8A N8 C7 355.9 342.7
C4A C8A N8 HN8 230.7 162.8
C4 C4A C8A N5 179.3 180.0
C8A C4A C4 O4 185.5 179.9
C8A C4A N5 C6 344.1 344.0
C8A C4A N5 HN5 218.9 163.9
N1 C8A N8 C4A 180.0 180.2
N8 C8A C4A C4 174.9 180.4
N8 C8A C4A N5 355.6 0.4
C7 N8 C8A HN8 125.3 179.8
C8A N8 C7 C6 30.2 45.7
C8A N8 C7 HC71 264.9 286.0
C8A N8 C7 HC72 155.4 165.4
C4A C4 N3 HN3 175.5 180.0
N3 C4 C4A O4 180.6 179.8
C4 C4A C8A N8 174.9 180.4
C8A C4A C4 N5 180.6 180.0
C4 C4A N5 C6 164.8 164.0
C4 C4A N5 HN5 39.5 344.0
N5 C4A C8A N8 355.6 0.4
C8A C4A N5 C4 179.4 180.0
N5 C4A C4 O4 4.8 359.9
C7 C6 N5 C4A 40.9 44.1
C4A N5 C6 C9 280.3 284.5
C4A N5 C6 HC6 159.0 163.8
C6 N5 C4A HN5 125.2 180.0
O4 C4 N3 HN3 356.1 359.8
N3 C4 O4 C4A 179.4 180.2
O4 C4 C4A N5 4.8 359.9
C8A N8 C7 HN8 234.7 180.2
C6 C7 N8 HC71 125.2 119.7
C6 C7 N8 HC72 234.8 240.3
N8 C7 C6 N5 313.2 303.7
N8 C7 C6 C9 69.5 63.3
N8 C7 C6 HC6 190.9 184.0
HC71 C7 N8 HC72 109.5 120.6
C8A N8 HN8 C7 131.7 179.8
HN8 N8 C7 C6 155.4 225.6
HN8 N8 C7 HC71 30.2 105.9
HN8 N8 C7 HC72 280.7 345.3
C4A N5 C6 C7 40.9 44.1
C6 C7 N8 HN8 155.4 225.6
N8 C7 C6 HC71 234.8 240.2
N8 C7 C6 HC72 125.2 119.7
HC71 C7 C6 HC72 250.5 239.5
N5 C6 C7 C9 243.7 240.4
N5 C6 C7 HC6 122.3 119.7
C7 C6 N5 HN5 166.2 224.1
C9 C6 C7 HC6 238.6 239.3
C7 C6 C9 N10 192.6 181.4
C7 C6 C9 HC91 67.3 301.4
C7 C6 C9 HC92 317.8 61.4
HC71 C7 N8 HN8 30.2 105.9
N8 C7 HC71 C6 125.9 118.9
N8 C7 HC71 HC72 242.9 239.4
C6 C7 HC71 HC72 117.0 120.5
HC71 C7 C6 N5 78.4 63.4
HC71 C7 C6 C9 194.7 183.0
HC71 C7 C6 HC6 316.1 303.7
HC72 C7 N8 HN8 280.7 345.3
N8 C7 HC72 C6 234.1 241.1
N8 C7 HC72 HC71 117.1 120.6
C6 C7 HC72 HC71 243.0 239.5
HC72 C7 C6 N5 188.0 184.0
HC72 C7 C6 C9 304.2 303.6
HC72 C7 C6 HC6 65.7 64.3
C4A N5 C6 HN5 234.7 180.0
N5 C6 C7 HC71 78.4 63.4
N5 C6 C7 HC72 188.0 184.0
C7 C6 N5 C9 120.7 119.6
C7 C6 N5 HC6 241.9 240.3
C9 C6 N5 HC6 121.3 120.7
N5 C6 C9 N10 312.3 300.0
N5 C6 C9 HC91 187.0 60.0
N5 C6 C9 HC92 77.6 180.0
C9 C6 C7 HC71 194.7 183.0
C9 C6 C7 HC72 304.2 303.6
C7 C6 C9 N5 240.2 241.5
C7 C6 C9 HC6 118.1 120.8
N5 C6 C9 HC6 237.8 239.3
C9 C6 N5 HN5 45.5 104.5
N10 C9 C6 HC91 125.3 240.0
N10 C9 C6 HC92 234.7 120.0
C6 C9 N10 C4' 129.5 180.0
C6 C9 N10 H10 4.2 0.0
HC91 C9 C6 HC92 109.5 240.0
HC6 C6 C7 HC71 316.1 303.7
HC6 C6 C7 HC72 65.7 64.3
C7 C6 HC6 N5 120.9 118.6
C7 C6 HC6 C9 238.2 239.3
N5 C6 HC6 C9 117.4 120.7
HC6 C6 N5 HN5 284.3 343.8
HC6 C6 C9 N10 74.5 60.7
HC6 C6 C9 HC91 309.2 180.7
HC6 C6 C9 HC92 199.7 300.7
C4A N5 HN5 C6 130.4 180.0
HN5 N5 C6 C9 45.5 104.5
HN5 N5 C6 HC6 284.3 343.8
N10 C9 C6 HC6 74.5 60.7
C6 C9 N10 HC91 234.7 120.0
C6 C9 N10 HC92 125.3 240.0
HC91 C9 N10 HC92 250.6 120.0
C4' N10 C9 H10 125.2 180.0
C9 N10 C4' C3' 177.8 180.0
C9 N10 C4' C5' 358.7 359.7
HC91 C9 C6 HC6 309.2 180.7
C6 C9 HC91 N10 120.8 240.0
C6 C9 HC91 HC92 240.4 120.0
N10 C9 HC91 HC92 119.6 240.0
HC91 C9 N10 C4' 254.8 60.0
HC91 C9 N10 H10 129.5 240.0
HC92 C9 C6 HC6 199.7 300.7
C6 C9 HC92 N10 239.2 120.0
C6 C9 HC92 HC91 119.6 240.0
N10 C9 HC92 HC91 240.4 120.0
HC92 C9 N10 C4' 4.2 300.0
HC92 C9 N10 H10 239.0 120.0
C4' N10 C9 HC91 254.8 60.0
C4' N10 C9 HC92 4.2 300.0
C9 N10 C4' H10 234.7 180.0
C3' C4' N10 C5' 179.0 180.3
N10 C4' C3' C2' 187.4 180.0
N10 C4' C3' HC3 7.4 360.0
N10 C4' C5' C6' 172.7 179.8
N10 C4' C5' HC5 352.6 0.3
H10 N10 C9 HC91 129.5 240.0
H10 N10 C9 HC92 239.0 120.0
C9 N10 H10 C4' 130.9 180.0
H10 N10 C4' C3' 303.0 0.0
H10 N10 C4' C5' 124.0 179.7
C3' C4' N10 H10 303.0 0.0
N10 C4' C3' C5' 181.0 179.7
C3' C4' C5' C6' 353.7 359.4
C3' C4' C5' HC5 173.6 180.0
C2' C3' C4' HC3 180.0 180.0
C4' C3' C2' C1' 359.6 0.0
C4' C3' C2' HC2 179.6 180.0
C5' C4' N10 H10 124.0 179.7
N10 C4' C5' C3' 179.0 180.3
C5' C4' C3' C2' 6.4 0.3
C5' C4' C3' HC3 186.4 180.3
C1' C6' C5' C4' 0.2 0.5
C4' C5' C6' HC61 180.1 180.4
C6' C5' C4' HC5 180.0 179.4
C2' C3' C4' C5' 6.4 0.3
C4' C3' C2' HC3 180.0 180.0
C1' C2' C3' HC2 180.0 180.0
C3' C2' C1' C6' 354.2 359.9
C3' C2' C1' C11 173.8 180.0
HC3 C3' C4' C5' 186.4 180.3
C4' C3' HC3 C2' 180.0 180.0
HC3 C3' C2' C1' 179.6 180.0
HC3 C3' C2' HC2 359.6 360.0
C1' C2' C3' HC3 179.6 180.0
C3' C2' C1' HC2 180.0 180.0
C6' C1' C2' C11 180.5 180.0
C2' C1' C6' C5' 5.9 359.8
C2' C1' C6' HC61 185.9 180.0
C2' C1' C11 N 2.1 180.0
C2' C1' C11 O11 184.0 360.0
HC2 C2' C3' HC3 359.6 360.0
C3' C2' HC2 C1' 180.0 180.0
HC2 C2' C1' C6' 174.2 180.0
HC2 C2' C1' C11 353.8 360.0
C4' C5' C6' C1' 0.2 0.5
C6' C1' C2' HC2 174.2 180.0
C2' C1' C6' C11 179.6 180.0
C6' C1' C11 N 181.6 0.0
C6' C1' C11 O11 3.6 180.0
C5' C6' C1' HC61 180.0 179.8
C1' C6' C5' HC5 180.2 179.9
C11 C1' C2' HC2 353.8 360.0
C2' C1' C11 C6' 180.5 180.0
C11 C1' C6' C5' 186.4 179.8
C11 C1' C6' HC61 6.4 359.9
N C11 C1' O11 178.1 180.0
C1' C11 N CA 182.8 180.0
C1' C11 N HN 2.8 359.9
C4' C5' C6' HC5 180.0 180.6
C5' C6' C1' C11 186.4 179.8
C1' C6' C5' HC61 180.0 180.2
HC61 C6' C1' C11 6.4 359.9
C1' C6' HC61 C5' 180.0 179.8
HC61 C6' C5' HC5 0.2 359.8
C4' C5' HC5 C6' 180.0 179.4
HC5 C5' C6' HC61 0.2 359.8
C1' C11 N O11 181.9 180.0
CA N C11 HN 180.0 180.1
C11 N CA C 202.3 270.0
C11 N CA CB 78.8 150.0
C11 N CA HCA 320.3 29.9
C1' C11 O11 N 178.0 180.0
O11 C11 N CA 0.9 0.1
O11 C11 N HN 180.9 180.0
CA N C11 O11 0.9 0.1
C11 N CA HN 180.0 179.9
C CA N CB 123.5 120.0
C CA N HCA 242.0 240.0
N CA C OX2 347.5 330.0
N CA C OX1 169.8 150.1
CB CA N HCA 118.5 120.0
N CA CB CG 60.2 300.0
N CA CB HCB1 294.9 60.0
N CA CB HCB2 185.4 180.0
HN N C11 O11 180.9 180.0
C11 N HN CA 180.0 180.1
HN N CA C 22.3 90.1
HN N CA CB 258.8 330.1
HN N CA HCA 140.3 210.1
C CA N HN 22.3 90.1
N CA C CB 237.2 240.0
N CA C HCA 118.8 120.0
CB CA C HCA 241.6 240.0
C CA CB CG 297.0 180.0
C CA CB HCB1 171.8 300.0
C CA CB HCB2 62.3 60.0
OX2 C CA OX1 177.7 180.0
CA C OX2 HX2 180.0 180.0
CB CA N HN 258.8 330.1
N CA CB C 123.2 120.0
N CA CB HCA 241.2 239.9
C CA CB HCA 118.0 120.0
CB CA C OX2 110.3 90.0
CB CA C OX1 292.6 270.0
CG CB CA HCB1 125.2 240.0
CG CB CA HCB2 234.7 120.0
CA CB CG CD 178.2 180.0
CA CB CG HCG1 52.9 300.0
CA CB CG HCG2 303.4 60.0
HCB1 CB CA HCB2 109.5 240.0
HCA CA N HN 140.3 210.1
N CA HCA C 240.0 240.0
N CA HCA CB 119.6 120.0
C CA HCA CB 239.6 240.0
HCA CA C OX2 228.7 210.0
HCA CA C OX1 51.0 30.0
HCA CA CB CG 179.0 60.0
HCA CA CB HCB1 53.8 180.1
HCA CA CB HCB2 304.3 300.0
OX2 C CA CB 110.3 90.0
OX2 C CA HCA 228.7 210.0
CA C OX2 OX1 182.5 180.0
OX1 C CA CB 292.6 270.0
OX1 C CA HCA 51.0 30.0
CA C OX1 OX2 177.5 180.0
OX1 C OX2 HX2 357.5 0.0
HX2 OX2 C OX1 357.5 0.0
CG CB CA HCA 179.0 60.0
CA CB CG HCB1 234.7 120.0
CA CB CG HCB2 125.2 240.0
HCB1 CB CG HCB2 250.5 120.0
CD CG CB HCG1 125.3 240.1
CD CG CB HCG2 234.8 120.0
CB CG CD OE1 72.0 360.0
CB CG CD OE2 251.9 180.1
HCG1 CG CB HCG2 109.5 239.9
HCB1 CB CA HCA 53.8 180.1
CA CB HCB1 CG 125.6 240.0
CA CB HCB1 HCB2 242.8 120.0
CG CB HCB1 HCB2 117.2 240.0
HCB1 CB CG CD 303.5 60.0
HCB1 CB CG HCG1 178.2 180.0
HCB1 CB CG HCG2 68.7 300.0
HCB2 CB CA HCA 304.3 300.0
CA CB HCB2 CG 234.4 120.0
CA CB HCB2 HCB1 117.2 240.0
CG CB HCB2 HCB1 242.8 120.0
HCB2 CB CG CD 53.0 300.0
HCB2 CB CG HCG1 287.7 59.9
HCB2 CB CG HCG2 178.2 180.0
CD CG CB HCB1 303.5 60.0
CD CG CB HCB2 53.0 300.0
CB CG CD HCG1 234.7 120.0
CB CG CD HCG2 125.2 240.0
HCG1 CG CD HCG2 250.5 120.0
OE1 CD CG OE2 180.1 179.9
CG CD OE2 HE2 180.0 180.0
HCG1 CG CB HCB1 178.2 180.0
HCG1 CG CB HCB2 287.7 59.9
CB CG HCG1 CD 125.0 240.0
CB CG HCG1 HCG2 242.5 120.0
CD CG HCG1 HCG2 117.5 240.0
HCG1 CG CD OE1 197.3 240.0
HCG1 CG CD OE2 17.2 60.1
HCG2 CG CB HCB1 68.7 300.0
HCG2 CG CB HCB2 178.2 180.0
CB CG HCG2 CD 235.0 120.0
CB CG HCG2 HCG1 117.5 240.0
CD CG HCG2 HCG1 242.5 120.0
HCG2 CG CD OE1 306.8 120.0
HCG2 CG CD OE2 126.7 300.1
OE1 CD CG HCG1 197.3 240.0
OE1 CD CG HCG2 306.8 120.0
CG CD OE1 OE2 179.9 180.1
OE1 CD OE2 HE2 359.9 0.1
OE2 CD CG HCG1 17.2 60.1
OE2 CD CG HCG2 126.7 300.1
CG CD OE2 OE1 180.1 179.9
C2 N2 HN21 HN22 128.6 179.8
C2 N2 HN22 HN21 234.7 180.2