PDB Chemical Component THC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for THC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
CN |
1.329 |
1.347 |
| N1 |
CA |
1.460 |
1.464 |
| N1 |
HN |
1.020 |
0.970 |
| CN |
ON |
1.232 |
1.212 |
| CN |
CM |
1.517 |
1.507 |
| CM |
HM1 |
1.115 |
1.090 |
| CM |
HM2 |
1.114 |
1.090 |
| CM |
HM3 |
1.115 |
1.090 |
| CA |
CB |
1.557 |
1.530 |
| CA |
C |
1.526 |
1.506 |
| CA |
HA |
1.115 |
1.090 |
| CB |
OG1 |
1.431 |
1.429 |
| CB |
CG2 |
1.527 |
1.530 |
| CB |
HB |
1.115 |
1.090 |
| OG1 |
HG1 |
0.951 |
0.967 |
| CG2 |
HG21 |
1.116 |
1.091 |
| CG2 |
HG22 |
1.115 |
1.090 |
| CG2 |
HG23 |
1.114 |
1.090 |
| C |
O |
1.231 |
1.208 |
| C |
OXT |
1.325 |
1.341 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for THC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CN |
N1 |
CA |
121.8 |
120.0 |
| CN |
N1 |
HN |
114.2 |
120.0 |
| N1 |
CN |
ON |
123.1 |
120.0 |
| N1 |
CN |
CM |
116.0 |
120.1 |
| CA |
N1 |
HN |
123.9 |
120.0 |
| N1 |
CA |
CB |
111.5 |
109.4 |
| N1 |
CA |
C |
112.0 |
109.5 |
| N1 |
CA |
HA |
105.9 |
109.4 |
| ON |
CN |
CM |
121.0 |
120.0 |
| CN |
CM |
HM1 |
115.9 |
109.5 |
| CN |
CM |
HM2 |
109.9 |
109.4 |
| CN |
CM |
HM3 |
109.8 |
109.5 |
| HM1 |
CM |
HM2 |
109.9 |
109.5 |
| HM1 |
CM |
HM3 |
109.8 |
109.5 |
| HM2 |
CM |
HM3 |
100.3 |
109.4 |
| CB |
CA |
C |
108.2 |
109.5 |
| CB |
CA |
HA |
109.8 |
109.5 |
| CA |
CB |
OG1 |
109.7 |
109.5 |
| CA |
CB |
CG2 |
111.3 |
109.5 |
| CA |
CB |
HB |
107.9 |
109.5 |
| C |
CA |
HA |
109.4 |
109.5 |
| CA |
C |
O |
121.3 |
120.0 |
| CA |
C |
OXT |
115.6 |
120.0 |
| OG1 |
CB |
CG2 |
109.0 |
109.5 |
| OG1 |
CB |
HB |
110.3 |
109.4 |
| CB |
OG1 |
HG1 |
109.7 |
106.8 |
| CG2 |
CB |
HB |
108.6 |
109.5 |
| CB |
CG2 |
HG21 |
111.3 |
109.5 |
| CB |
CG2 |
HG22 |
111.5 |
109.5 |
| CB |
CG2 |
HG23 |
111.5 |
109.5 |
| HG21 |
CG2 |
HG22 |
111.5 |
109.5 |
| HG21 |
CG2 |
HG23 |
111.5 |
109.4 |
| HG22 |
CG2 |
HG23 |
98.9 |
109.5 |
| O |
C |
OXT |
123.1 |
120.0 |
| C |
OXT |
HXT |
115.6 |
120.0 |
Torsion Angles for THC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N1 |
CN |
HN |
180.1 |
179.8 |
| CN |
N1 |
CA |
CB |
89.0 |
150.1 |
| CN |
N1 |
CA |
C |
210.5 |
270.1 |
| CN |
N1 |
CA |
HA |
329.6 |
30.1 |
| ON |
CN |
N1 |
CM |
180.3 |
179.8 |
| N1 |
CN |
CM |
HM1 |
180.0 |
179.9 |
| N1 |
CN |
CM |
HM2 |
305.3 |
300.0 |
| N1 |
CN |
CM |
HM3 |
54.8 |
59.9 |
| CN |
N1 |
CA |
HN |
179.9 |
180.2 |
| CA |
N1 |
CN |
ON |
0.3 |
359.8 |
| CA |
N1 |
CN |
CM |
180.0 |
180.0 |
| CB |
CA |
N1 |
C |
238.5 |
240.0 |
| CB |
CA |
N1 |
HA |
119.4 |
120.0 |
| N1 |
CA |
CB |
OG1 |
297.3 |
60.1 |
| N1 |
CA |
CB |
CG2 |
176.6 |
300.0 |
| N1 |
CA |
CB |
HB |
57.5 |
180.0 |
| C |
CA |
N1 |
HA |
240.9 |
240.0 |
| N1 |
CA |
C |
O |
315.8 |
150.0 |
| N1 |
CA |
C |
OXT |
133.6 |
330.0 |
| CN |
N1 |
HN |
CA |
180.1 |
179.8 |
| HN |
N1 |
CN |
ON |
180.2 |
180.0 |
| HN |
N1 |
CN |
CM |
359.9 |
0.2 |
| HN |
N1 |
CA |
CB |
269.1 |
329.9 |
| HN |
N1 |
CA |
C |
30.5 |
89.9 |
| HN |
N1 |
CA |
HA |
149.7 |
209.9 |
| ON |
CN |
N1 |
CA |
0.3 |
359.8 |
| ON |
CN |
N1 |
HN |
180.2 |
180.0 |
| N1 |
CN |
ON |
CM |
179.7 |
180.2 |
| ON |
CN |
CM |
HM1 |
359.7 |
0.1 |
| ON |
CN |
CM |
HM2 |
125.0 |
120.1 |
| ON |
CN |
CM |
HM3 |
234.5 |
240.1 |
| CM |
CN |
N1 |
CA |
180.0 |
180.0 |
| CM |
CN |
N1 |
HN |
359.9 |
0.2 |
| N1 |
CN |
CM |
ON |
180.3 |
179.8 |
| HM1 |
CM |
CN |
HM2 |
234.7 |
240.0 |
| HM1 |
CM |
CN |
HM3 |
125.2 |
120.1 |
| HM2 |
CM |
CN |
HM3 |
250.5 |
240.1 |
| CN |
CM |
HM1 |
HM2 |
125.3 |
120.0 |
| CN |
CM |
HM1 |
HM3 |
234.8 |
239.9 |
| HM2 |
CM |
HM1 |
HM3 |
109.5 |
120.0 |
| CN |
CM |
HM2 |
HM1 |
231.3 |
240.0 |
| CN |
CM |
HM2 |
HM3 |
115.6 |
120.0 |
| HM1 |
CM |
HM2 |
HM3 |
244.4 |
240.0 |
| CN |
CM |
HM3 |
HM1 |
128.6 |
120.1 |
| CN |
CM |
HM3 |
HM2 |
244.3 |
240.1 |
| HM1 |
CM |
HM3 |
HM2 |
115.7 |
120.0 |
| CB |
CA |
N1 |
HN |
269.1 |
329.9 |
| N1 |
CA |
CB |
C |
123.7 |
120.0 |
| N1 |
CA |
CB |
HA |
243.0 |
240.1 |
| C |
CA |
CB |
HA |
119.3 |
120.0 |
| CB |
CA |
C |
O |
79.1 |
270.0 |
| CB |
CA |
C |
OXT |
257.0 |
90.0 |
| OG1 |
CB |
CA |
CG2 |
120.7 |
120.0 |
| OG1 |
CB |
CA |
HB |
239.8 |
240.1 |
| CA |
CB |
OG1 |
HG1 |
180.0 |
300.0 |
| CG2 |
CB |
CA |
HB |
119.1 |
120.0 |
| CA |
CB |
CG2 |
HG21 |
180.0 |
180.0 |
| CA |
CB |
CG2 |
HG22 |
305.2 |
300.0 |
| CA |
CB |
CG2 |
HG23 |
54.8 |
60.1 |
| C |
CA |
N1 |
HN |
30.5 |
89.9 |
| N1 |
CA |
C |
CB |
236.6 |
240.0 |
| N1 |
CA |
C |
HA |
117.1 |
120.0 |
| CB |
CA |
C |
HA |
240.4 |
240.0 |
| C |
CA |
CB |
OG1 |
173.6 |
300.0 |
| C |
CA |
CB |
CG2 |
52.9 |
180.0 |
| C |
CA |
CB |
HB |
293.8 |
60.0 |
| O |
C |
CA |
OXT |
182.1 |
180.0 |
| CA |
C |
OXT |
HXT |
179.9 |
180.0 |
| HA |
CA |
N1 |
HN |
149.7 |
209.9 |
| N1 |
CA |
HA |
CB |
120.5 |
119.9 |
| N1 |
CA |
HA |
C |
239.1 |
240.0 |
| CB |
CA |
HA |
C |
118.6 |
120.0 |
| HA |
CA |
CB |
OG1 |
54.3 |
180.0 |
| HA |
CA |
CB |
CG2 |
293.6 |
60.0 |
| HA |
CA |
CB |
HB |
174.5 |
299.9 |
| HA |
CA |
C |
O |
198.7 |
30.0 |
| HA |
CA |
C |
OXT |
16.6 |
210.0 |
| OG1 |
CB |
CA |
C |
173.6 |
300.0 |
| OG1 |
CB |
CA |
HA |
54.3 |
180.0 |
| CA |
CB |
OG1 |
CG2 |
237.9 |
240.0 |
| CA |
CB |
OG1 |
HB |
118.7 |
120.0 |
| CG2 |
CB |
OG1 |
HB |
240.9 |
240.0 |
| OG1 |
CB |
CG2 |
HG21 |
58.8 |
60.0 |
| OG1 |
CB |
CG2 |
HG22 |
184.1 |
180.0 |
| OG1 |
CB |
CG2 |
HG23 |
293.6 |
300.0 |
| CG2 |
CB |
CA |
C |
52.9 |
180.0 |
| CG2 |
CB |
CA |
HA |
293.6 |
60.0 |
| CA |
CB |
CG2 |
OG1 |
121.2 |
120.0 |
| CA |
CB |
CG2 |
HB |
241.3 |
240.0 |
| OG1 |
CB |
CG2 |
HB |
120.1 |
119.9 |
| CG2 |
CB |
OG1 |
HG1 |
302.2 |
60.0 |
| HG21 |
CG2 |
CB |
HG22 |
234.7 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
125.2 |
119.9 |
| HG22 |
CG2 |
CB |
HG23 |
250.5 |
240.0 |
| HB |
CB |
CA |
C |
293.8 |
60.0 |
| HB |
CB |
CA |
HA |
174.5 |
299.9 |
| CA |
CB |
HB |
OG1 |
240.2 |
240.0 |
| CA |
CB |
HB |
CG2 |
120.8 |
120.0 |
| OG1 |
CB |
HB |
CG2 |
240.7 |
240.0 |
| HB |
CB |
OG1 |
HG1 |
61.3 |
180.0 |
| HB |
CB |
CG2 |
HG21 |
298.7 |
300.0 |
| HB |
CB |
CG2 |
HG22 |
63.9 |
60.0 |
| HB |
CB |
CG2 |
HG23 |
173.5 |
180.1 |
| HG1 |
OG1 |
CB |
CG2 |
302.2 |
60.0 |
| HG1 |
OG1 |
CB |
HB |
61.3 |
180.0 |
| HG21 |
CG2 |
CB |
HB |
298.7 |
300.0 |
| CB |
CG2 |
HG21 |
HG22 |
125.3 |
120.0 |
| CB |
CG2 |
HG21 |
HG23 |
234.7 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
109.5 |
120.0 |
| HG22 |
CG2 |
CB |
HB |
63.9 |
60.0 |
| CB |
CG2 |
HG22 |
HG21 |
234.8 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
117.5 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
242.6 |
240.0 |
| HG23 |
CG2 |
CB |
HB |
173.5 |
180.1 |
| CB |
CG2 |
HG23 |
HG21 |
125.1 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
242.5 |
240.0 |
| HG21 |
CG2 |
HG23 |
HG22 |
117.4 |
120.0 |
| O |
C |
CA |
HA |
198.7 |
30.0 |
| CA |
C |
O |
OXT |
177.7 |
180.0 |
| O |
C |
OXT |
HXT |
357.8 |
0.0 |
| OXT |
C |
CA |
HA |
16.6 |
210.0 |
| CA |
C |
OXT |
O |
182.2 |
180.0 |