Atom Nomenclature for TGL

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for TGL

Atom Name (V3) Atom Name (V2)
CA1 CA1
CA2 CA2
CA3 CA3
CA4 CA4
CA5 CA5
CA6 CA6
CA7 CA7
CA8 CA8
CA9 CA9
OA1 OA1
CB1 CB1
CB2 CB2
CB3 CB3
CB4 CB4
CB5 CB5
CB6 CB6
CB7 CB7
CB8 CB8
CB9 CB9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
OB1 OB1
OG1 OG1
CG1 CG1
CG2 CG2
OG2 OG2
CG3 CG3
OG3 OG3
CC1 CC1
CC2 CC2
CC3 CC3
CC4 CC4
CC5 CC5
CC6 CC6
CC7 CC7
CC8 CC8
CC9 CC9
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
OC1 OC1
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
HA21 1HA2
HA22 2HA2
HA31 1HA3
HA32 2HA3
HA41 1HA4
HA42 2HA4
HA51 1HA5
HA52 2HA5
HA61 1HA6
HA62 2HA6
HA71 1HA7
HA72 2HA7
HA81 1HA8
HA82 2HA8
HA91 1HA9
HA92 2HA9
HB21 1HB2
HB22 2HB2
HB31 1HB3
HB32 2HB3
HB41 1HB4
HB42 2HB4
HB51 1HB5
HB52 2HB5
HB61 1HB6
HB62 2HB6
HB71 1HB7
HB72 2HB7
HB81 1HB8
HB82 2HB8
HB91 1HB9
HB92 2HB9
H101 1H10
H102 2H10
H111 1H11
H112 2H11
H121 1H12
H122 2H12
H131 1H13
H132 2H13
H141 1H14
H142 2H14
HG11 1HG1
HG12 2HG1
HG2 HG2
HG31 1HG3
HG32 2HG3
HC21 1HC2
HC22 2HC2
HC31 1HC3
HC32 2HC3
HC41 1HC4
HC42 2HC4
HC51 1HC5
HC52 2HC5
HC61 1HC6
HC62 2HC6
HC71 1HC7
HC72 2HC7
HC81 1HC8
HC82 2HC8
HC91 1HC9
HC92 2HC9
H151 1H15
H152 2H15
H161 1H16
H162 2H16
H171 1H17
H172 2H17
H181 1H18
H182 2H18
H191 1H19
H192 2H19
H201 1H20
H202 2H20
H211 1H21
H212 2H21
H221 1H22
H222 2H22
H231 1H23
H232 2H23
H241 1H24
H242 2H24
H251 1H25
H252 2H25
H261 1H26
H262 2H26
H271 1H27
H272 2H27
H281 1H28
H282 2H28
H283 3H28
H291 1H29
H292 2H29
H301 1H30
H302 2H30
H311 1H31
H312 2H31
H321 1H32
H322 2H32
H323 3H32
H331 1H33
H332 2H33
H341 1H34
H342 2H34
H351 1H35
H352 2H35
H361 1H36
H362 2H36
H363 3H36