Atom Nomenclature for TG1

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for TG1

Atom Name (V3) Atom Name (V2)
C34 C34
C11 C11
C7 C7
C8 C8
C9 C9
C10 C10
C1 C1
C2 C2
O1 O1
C13 C13
O2 O2
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C3 C3
O3 O3
C21 C21
O4 O4
C22 C22
C23 C23
C24 C24
C25 C25
C4 C4
C26 C26
C5 C5
C6 C6
O5 O5
C12 C12
O12 O12
C31 C31
O9 O9
C32 C32
O10 O10
C33 C33
O7 O7
C27 C27
O8 O8
C28 C28
C29 C29
C30 C30
O6 O6
O11 O11
H341 H341
H342 H342
H343 H343
HC8 HC8
HC91 HC91
HC92 HC92
HC1 HC1
HC2 HC2
H141 H141
H142 H142
H151 H151
H152 H152
H161 H161
H162 H162
H171 H171
H172 H172
H181 H181
H182 H182
H191 H191
H192 H192
H201 H201
H202 H202
H203 H203
HC3 HC3
H231 H231
H232 H232
H233 H233
H24 H24
H251 H251
H252 H252
H253 H253
H261 H261
H262 H262
H263 H263
HC6 HC6
H311 H311
H312 H312
H313 H313
H331 H331
H332 H332
H333 H333
H281 H281
H282 H282
H291 H291
H292 H292
H301 H301
H302 H302
H303 H303
HO6 HO6
HO11 HO11