Atom Nomenclature for TFG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for TFG

Atom Name (V3) Atom Name (V2)
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C13 C13
C19 C19
C12 C12
N3 N3
C11 C11
C10 C10
N2 N2
C9 C9
C8 C8
N1 N1
C7 C7
O1 O1
C4 C4
S1 S1
C3 C3
C2 C2
C1 C1
C5 C5
C6 C6
F1 F1
F2 F2
F3 F3
O3 O3
O2 O2
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H12 H12
H101 1H10
H102 2H10
H9C1 1H9C
H9C2 2H9C
H8C1 1H8C
H8C2 2H8C
H3 H3
H2 H2
HA HA
HB HB