Atom Nomenclature for TEJ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for TEJ

Atom Name (V3) Atom Name (V2)
O21 O21
C17 C17
C18 C18
C20 C20
C19 C19
C15 C15
O16 O16
C12 C12
C10 C10
C11 C11
C7 C7
C8 C8
C9 C9
C5 C5
C6 C6
C22 C22
C4 C4
C3 C3
C2 C2
C1 C1
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
O34 O34
C73 C73
C29 C29
O32 O32
C30 C30
C31 C31
H31 H31
H20 H20
H20A H20A
H19 H19
H51 H51
H15 H15
H12 H12
H12A H12A
H10 H10
H11 H11
H11A H11A
H11B H11B
H7 H7
H8 H8
H8A H8A
H9 H9
H9A H9A
H5 H5
H22 H22
H22A H22A
H22B H22B
H3 H3
H3A H3A
H2 H2
H2A H2A
H1 H1
H1A H1A
H23 H23
H24 H24
H26 H26
H26A H26A
H27 H27
HO34 HO34
H73 H73
H73A H73A
H29 H29
HO32 HO32
H31A H31A