PDB Chemical Component TED

Ideal Model

Chemical Description

Name 5-[(1E)-14-carboxy-10,13-bis(carboxymethyl)-3,8-dioxo-4,7,10,13-tetraazatetradec-1-en-1-yl]-2'-deoxyuridine 5'-(dihydrogen phosphate)
Formula C24 H35 N6 O16 P
Formal charge 0
Molecular weight 694.539 g/mol
Component type DNA linking
Nonstandard Parent Id DT

Chemical features

Atom count 82
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP3 HOY4 HOY6 HOY7 HOP3
Bond count 83
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-[(13E)-1-carboxy-2,5-bis(carboxymethyl)-7,12-dioxo-2,5,8,11-tetraazatetradec-13-en-14-yl]-2'-deoxyuridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) 2-[carboxymethyl-[2-[carboxymethyl-[2-[2-[[(E)-3-[1-[(2R,4S,5R)-4-hydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-2,4-dioxo-pyrimidin-5-yl]prop-2-enoyl]amino]ethylamino]-2-oxo-ethyl]amino]ethyl]amino]ethanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(\C=C\C(=O)NCCNC(=O)CN(CCN(CC(O)=O)CC(O)=O)CC(O)=O)C(=O)NC2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=C(C=CC(=O)NCCNC(=O)CN(CCN(CC(O)=O)CC(O)=O)CC(O)=O)C(=O)NC2=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)/C=C/C(=O)NCCNC(=O)C[N@](CCN(CC(=O)O)CC(=O)O)CC(=O)O)COP(=O)(O)O)O
InChI descriptor InChI=1S/C24H35N6O16P/c31-15-7-19(46-16(15)13-45-47(42,43)44)30-8-14(23(40)27-24(30)41)1-2-17(32)25-3-4-26-18(33)9-28(10-20(34)35)5-6-29(11-21(36)37)12-22(38)39/h1-2,8,15-16,19,31H,3-7,9-13H2,(H,25,32)(H,26,33)(H,34,35)(H,36,37)(H,38,39)(H,27,40,41)(H2,42,43,44)/b2-1+/t15-,16+,19+/m0/s1
InChIKey descriptor GANOOALIPBDIPI-DARGZDBCSA-N

Status Information

Last modified 2011-06-04
Created 2010-07-22
Release status REL
Model PDB code 2KY8
Processing site RCSB