C24 H35 N6 O16 P
694.539
DT
5-[(1E)-14-carboxy-10,13-bis(carboxymethyl)-3,8-dioxo-4,7,10,13-tetraazatetradec-1-en-1-yl]-2'-deoxyuridine 5'-(dihydrogen phosphate)
N
0
Corina
N
2010-07-22
2KY8
N
2011-06-04
RCSB
REL
ATOMN
TED
DNA linking
P
0
-16.425
-9.972
37.354
1
N
P
TED
N
-11.396
2.869
-0.735
1
N
P
N1
0
-14.567
-11.434
32.735
1
N
N1
TED
N
-6.245
-1.315
0.209
2
N
N
C2
0
-13.506
-11.560
31.861
1
N
C2
TED
N
-6.172
-0.689
1.394
3
N
C
O2
0
-13.476
-10.976
30.780
1
N
O2
TED
N
-7.201
-0.341
1.939
4
N
O
N3
0
-12.477
-12.383
32.274
1
N
N3
TED
N
-4.998
-0.433
1.996
5
N
N
C4
0
-12.420
-13.081
33.468
1
N
C4
TED
N
-3.836
-0.806
1.419
6
N
C
O4
0
-11.450
-13.787
33.734
1
N
O4
TED
N
-2.771
-0.577
1.961
7
N
O
C5
0
-13.573
-12.890
34.321
1
N
C5
TED
N
-3.887
-1.496
0.118
8
N
C
C6
0
-14.590
-12.090
33.936
1
N
C6
TED
N
-5.128
-1.727
-0.447
9
N
C
C7
0
-13.640
-13.594
35.652
1
N
C7
TED
N
-2.659
-1.924
-0.557
10
N
C
C8
0
-14.776
-14.160
36.049
1
N
C8
TED
N
-1.453
-1.618
-0.025
11
N
C
C9
0
-14.847
-14.827
37.358
1
N
C9
TED
N
-0.267
-1.931
-0.733
12
N
C
O9
0
-14.995
-16.032
37.420
1
N
O9
TED
N
-0.332
-2.476
-1.821
13
N
O
C1'
0
-15.684
-10.563
32.324
1
N
C1'
TED
N
-7.559
-1.567
-0.387
14
R
C
N10
0
-14.749
-14.101
38.490
1
N
N10
TED
N
0.935
-1.627
-0.204
15
N
N
C11
0
-14.831
-14.763
39.794
1
N
C11
TED
N
2.161
-1.951
-0.936
16
N
C
C12
0
-13.892
-15.971
39.813
1
N
C12
TED
N
3.376
-1.503
-0.120
17
N
C
N13
0
-13.280
-16.094
41.139
1
N
N13
TED
N
4.603
-1.827
-0.853
18
N
N
C2'
0
-17.061
-11.199
32.533
1
N
C2'
TED
N
-8.360
-2.540
0.499
19
N
C
C3'
0
-17.850
-10.053
33.121
1
N
C3'
TED
N
-9.641
-1.753
0.866
20
S
C
O3'
0
-18.750
-9.530
32.141
1
N
O3'
TED
N
-10.792
-2.600
0.815
21
N
O
C4'
0
-16.933
-8.934
33.557
1
N
C4'
TED
N
-9.694
-0.680
-0.251
22
R
C
O4'
0
-15.630
-9.282
33.063
1
N
O4'
TED
N
-8.307
-0.341
-0.458
23
N
O
C5'
0
-16.869
-8.729
35.067
1
N
C5'
TED
N
-10.485
0.544
0.215
24
N
C
O5'
0
-16.565
-9.947
35.751
1
N
O5'
TED
N
-10.618
1.466
-0.868
25
N
O
CY1
0
-13.410
-16.517
43.576
1
N
CY1
TED
N
7.066
-1.856
-1.076
26
N
C
OY1
0
-15.273
-16.533
42.075
1
N
OY1
TED
N
5.869
-0.980
0.760
27
N
O
CY2
0
-17.023
-16.416
46.746
1
N
CY2
TED
N
8.139
2.811
0.757
28
N
C
OY2
0
-16.594
-15.346
44.656
1
N
OY2
TED
N
8.828
4.577
-0.643
29
N
O
CY3
0
-16.896
-18.769
46.723
1
N
CY3
TED
N
10.546
2.748
1.010
30
N
C
OY3
0
-18.197
-18.674
44.725
1
N
OY3
TED
N
11.745
1.856
-0.812
31
N
O
CY4
0
-14.031
-18.667
44.315
1
N
CY4
TED
N
9.473
-1.919
-0.823
32
N
C
OY4
0
-15.543
-18.957
42.492
1
N
OY4
TED
N
10.680
-4.048
-0.491
33
N
O
CY5
0
-14.045
-16.390
42.209
1
N
CY5
TED
N
5.804
-1.522
-0.323
34
N
C
CY6
0
-16.799
-15.206
45.875
1
N
CY6
TED
N
8.017
4.192
0.165
35
N
C
OY6
0
-16.819
-14.098
46.362
1
N
OY6
TED
N
7.006
4.994
0.536
36
N
O
CY7
0
-18.124
-19.068
45.903
1
N
CY7
TED
N
11.809
2.406
0.262
37
N
C
OY7
0
-19.040
-19.692
46.389
1
N
OY7
TED
N
13.005
2.711
0.789
38
N
O
CY8
0
-14.380
-19.093
42.912
1
N
CY8
TED
N
9.601
-3.295
-0.221
39
N
C
OY8
0
-13.529
-19.568
42.195
1
N
OY8
TED
N
8.734
-3.721
0.504
40
N
O
CYA
0
-13.927
-16.879
45.847
1
N
CYA
TED
N
8.277
0.162
-0.507
41
N
C
NYA
0
-14.320
-17.236
44.477
1
N
NYA
TED
N
8.223
-1.299
-0.363
42
N
N
CYB
0
-14.924
-17.484
46.838
1
N
CYB
TED
N
9.335
0.730
0.441
43
N
C
NYB
0
-16.254
-17.549
46.216
1
N
NYB
TED
N
9.389
2.191
0.297
44
N
N
O3P
0
-16.384
-11.375
37.824
1
N
O3P
TED
Y
-12.957
2.594
-0.454
45
N
O
O1P
0
-14.975
-9.170
37.815
1
N
O1P
TED
N
-10.822
3.647
0.387
46
N
O
O2P
0
-17.773
-9.170
38.060
1
N
O2P
TED
N
-11.236
3.704
-2.103
47
N
O
HN3
0
-11.700
-12.484
31.652
1
N
HN3
TED
N
-4.985
0.023
2.853
48
N
H
H6
0
-15.440
-11.965
34.590
1
N
H6
TED
N
-5.209
-2.230
-1.400
49
N
H
H7
0
-12.765
-13.639
36.284
1
N
H7
TED
N
-2.716
-2.484
-1.479
50
N
H
H8
0
-15.646
-14.130
35.410
1
N
H8
TED
N
-1.394
-1.135
0.939
51
N
H
H1'
0
-15.559
-10.397
31.244
1
N
H1'
TED
N
-7.439
-1.988
-1.386
52
N
H
HN10
0
-14.620
-13.111
38.439
0
N
HN10
TED
N
0.987
-1.193
0.662
53
N
H
H11
0
-14.535
-14.056
40.583
1
N
H11
TED
N
2.212
-3.027
-1.102
54
N
H
H11A
0
-15.864
-15.099
39.971
0
N
H11A
TED
N
2.159
-1.435
-1.896
55
N
H
H12
0
-14.464
-16.883
39.587
1
N
H12
TED
N
3.325
-0.427
0.045
56
N
H
H12A
0
-13.105
-15.835
39.057
0
N
H12A
TED
N
3.379
-2.019
0.840
57
N
H
HN13
0
-12.295
-15.958
41.250
0
N
HN13
TED
N
4.550
-2.261
-1.719
58
N
H
H2'
0
-17.497
-11.559
31.589
1
N
H2'
TED
N
-8.612
-3.443
-0.057
59
N
H
H2'A
0
-17.018
-12.063
33.213
0
N
H2'A
TED
N
-7.795
-2.790
1.397
60
N
H
H3'
0
-18.403
-10.438
33.991
1
N
H3'
TED
N
-9.545
-1.289
1.847
61
N
H
HO3'
0
-19.243
-8.810
32.516
0
N
HO3'
TED
N
-10.762
-3.341
1.435
62
N
H
H4'
0
-17.316
-7.984
33.157
1
N
H4'
TED
N
-10.131
-1.094
-1.160
63
N
H
H5'
0
-16.084
-7.992
35.291
1
N
H5'
TED
N
-11.474
0.232
0.550
64
N
H
H5'A
0
-17.845
-8.361
35.416
0
N
H5'A
TED
N
-9.958
1.025
1.039
65
N
H
HY1
0
-13.211
-15.514
43.981
1
N
HY1
TED
N
7.170
-2.938
-1.149
66
N
H
HY1A
0
-12.465
-17.073
43.490
0
N
HY1A
TED
N
7.015
-1.428
-2.077
67
N
H
HY2
0
-16.692
-16.196
47.772
1
N
HY2
TED
N
8.147
2.881
1.844
68
N
H
HY2A
0
-18.093
-16.670
46.753
0
N
HY2A
TED
N
7.293
2.203
0.438
69
N
H
HY3
0
-17.184
-18.622
47.774
1
N
HY3
TED
N
10.593
2.325
2.014
70
N
H
HY3A
0
-16.192
-19.611
46.650
0
N
HY3A
TED
N
10.445
3.831
1.076
71
N
H
HY4
0
-12.962
-18.848
44.498
1
N
HY4
TED
N
10.319
-1.306
-0.511
72
N
H
HY4A
0
-14.629
-19.246
45.034
0
N
HY4A
TED
N
9.462
-1.997
-1.910
73
N
H
HOY4
0
-15.596
-19.272
41.597
0
N
HOY4
TED
Y
10.718
-4.923
-0.083
74
N
H
HOY6
0
-16.662
-13.451
45.684
0
N
HOY6
TED
Y
6.969
5.870
0.130
75
N
H
HOY7
0
-19.731
-19.794
45.745
0
N
HOY7
TED
Y
13.787
2.472
0.273
76
N
H
HYA
0
-13.923
-15.784
45.954
1
N
HYA
TED
N
8.536
0.417
-1.535
77
N
H
HYAA
0
-12.920
-17.272
46.054
0
N
HYAA
TED
N
7.304
0.588
-0.262
78
N
H
HYB
0
-14.598
-18.498
47.114
1
N
HYB
TED
N
9.076
0.475
1.469
79
N
H
HYBA
0
-14.971
-16.856
47.740
0
N
HYBA
TED
N
10.308
0.304
0.196
80
N
H
HO3P
0
-15.566
-11.533
38.280
0
N
HO3P
TED
Y
-13.398
2.088
-1.149
81
N
H
HO2P
0
-17.469
-8.432
38.575
0
N
HO2P
TED
N
-11.680
4.562
-2.094
82
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
doub
N
5
N
sing
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
doub
N
10
N
doub
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
E
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
doub
N
30
N
doub
N
31
N
doub
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
doub
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
RCSB
RCSB
O=C(O)CN(CC(=O)O)CCN(CC(=O)O)CC(=O)NCCNC(=O)\C=C\C=1C(=O)NC(=O)N(C=1)C2OC(C(O)C2)COP(=O)(O)O
O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(\C=C\C(=O)NCCNC(=O)CN(CCN(CC(O)=O)CC(O)=O)CC(O)=O)C(=O)NC2=O
O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=C(C=CC(=O)NCCNC(=O)CN(CCN(CC(O)=O)CC(O)=O)CC(O)=O)C(=O)NC2=O
C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)/C=C/C(=O)NCCNC(=O)C[N@](CCN(CC(=O)O)CC(=O)O)CC(=O)O)COP(=O)(O)O)O
C1C(C(OC1N2C=C(C(=O)NC2=O)C=CC(=O)NCCNC(=O)CN(CCN(CC(=O)O)CC(=O)O)CC(=O)O)COP(=O)(O)O)O
InChI=1S/C24H35N6O16P/c31-15-7-19(46-16(15)13-45-47(42,43)44)30-8-14(23(40)27-24(30)41)1-2-17(32)25-3-4-26-18(33)9-28(10-20(34)35)5-6-29(11-21(36)37)12-22(38)39/h1-2,8,15-16,19,31H,3-7,9-13H2,(H,25,32)(H,26,33)(H,34,35)(H,36,37)(H,38,39)(H,27,40,41)(H2,42,43,44)/b2-1+/t15-,16+,19+/m0/s1
GANOOALIPBDIPI-DARGZDBCSA-N
5-[(13E)-1-carboxy-2,5-bis(carboxymethyl)-7,12-dioxo-2,5,8,11-tetraazatetradec-13-en-14-yl]-2'-deoxyuridine 5'-(dihydrogen phosphate)
2-[carboxymethyl-[2-[carboxymethyl-[2-[2-[[(E)-3-[1-[(2R,4S,5R)-4-hydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-2,4-dioxo-pyrimidin-5-yl]prop-2-enoyl]amino]ethylamino]-2-oxo-ethyl]amino]ethyl]amino]ethanoic acid