PDB Chemical Component TDY

Ideal Model

Chemical Description

Name 5-(METHYLAMINO)THYMIDINE 5'-(DIHYDROGEN PHOSPHATE)
Formula C11 H20 N3 O8 P
Formal charge 0
Molecular weight 353.266 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 43
Chiral atom count 4
Chiral atoms C4' C3' C1' C5
Observed leaving atoms OP3
Bond count 44
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-(methylamino)thymidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-[(5R)-5-methyl-5-methylamino-2,4-dioxo-1,3-diazinan-1-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CN[C@]1(C)CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) CN[C]1(C)CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) C[C@]1(CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)NC
InChI descriptor InChI=1S/C11H20N3O8P/c1-11(12-2)5-14(10(17)13-9(11)16)8-3-6(15)7(22-8)4-21-23(18,19)20/h6-8,12,15H,3-5H2,1-2H3,(H,13,16,17)(H2,18,19,20)/t6-,7+,8+,11+/m0/s1
InChIKey descriptor GANAXGZWNNBICE-PRKAOEEVSA-N

Status Information

Last modified 2011-06-04
Created 2009-08-14
Release status REL
Model PDB code 2WQ6
Processing site EBI