PDB Chemical Component TDU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TDU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OAA CAR 1.233 1.216
CAB CAF 1.395 1.501
CAB CAQ 1.402 1.294
CAC CAD 1.393 1.361
CAC CAS 1.394 1.395
CAD CAT 1.388 1.407
CAE CAS 1.392 1.386
CAE CAU 1.390 1.382
CAF CAG 1.547 1.530
CAG CAH 1.538 1.534
CAH CAJ 1.538 1.531
CAI CAK 1.530 1.529
CAI NAN 1.470 1.465
CAJ CAQ 1.539 1.500
CAK CAQ 1.530 1.507
NAL NAM 1.244 1.271
NAL SAP 1.636 1.567
NAM CAT 1.353 1.339
NAN CAR 1.327 1.348
NAO CAR 1.341 1.348
NAO CAS 1.335 1.399
SAP CAU 1.681 1.765
CAT CAU 1.390 1.410
CAB HAB 1.080 1.080
CAC HAC 1.080 1.080
CAD HAD 1.080 1.080
CAE HAE 1.080 1.080
CAF HAF 1.100 1.090
CAF HAFA 1.100 1.090
CAG HAG 1.100 1.090
CAG HAGA 1.100 1.090
CAH HAH 1.100 1.090
CAH HAHA 1.100 1.089
CAI HAI 1.100 1.090
CAI HAIA 1.100 1.091
CAJ HAJ 1.101 1.090
CAJ HAJA 1.100 1.090
CAK HAK 1.100 1.090
CAK HAKA 1.100 1.090
NAN HNAN 1.000 0.971
NAO HNAO 1.000 0.971

Bond Angles for TDU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OAA CAR NAN 121.0 120.0
OAA CAR NAO 124.1 120.0
CAF CAB CAQ 126.9 124.1
CAB CAF CAG 112.5 110.1
CAF CAB HAB 116.5 117.9
CAB CAF HAF 108.5 109.4
CAB CAF HAFA 108.5 109.4
CAB CAQ CAJ 121.2 124.1
CAB CAQ CAK 117.7 118.0
CAQ CAB HAB 116.5 118.0
CAD CAC CAS 120.6 121.2
CAC CAD CAT 120.4 120.3
CAD CAC HAC 119.7 119.4
CAC CAD HAD 119.8 119.8
CAC CAS CAE 119.2 119.8
CAC CAS NAO 116.8 120.1
CAS CAC HAC 119.7 119.4
CAD CAT NAM 128.9 131.9
CAD CAT CAU 118.5 118.1
CAT CAD HAD 119.8 119.9
CAS CAE CAU 119.4 119.4
CAE CAS NAO 123.9 120.1
CAS CAE HAE 120.3 120.3
CAE CAU SAP 134.1 134.8
CAE CAU CAT 121.8 121.2
CAU CAE HAE 120.3 120.3
CAF CAG CAH 115.3 108.5
CAG CAF HAF 108.5 109.4
CAG CAF HAFA 108.5 109.4
CAF CAG HAG 107.6 109.6
CAF CAG HAGA 107.6 109.6
CAG CAH CAJ 111.2 108.4
CAH CAG HAG 107.6 109.6
CAH CAG HAGA 107.6 109.7
CAG CAH HAH 108.9 109.6
CAG CAH HAHA 108.9 109.6
CAH CAJ CAQ 111.4 110.2
CAJ CAH HAH 108.9 109.6
CAJ CAH HAHA 108.9 109.6
CAH CAJ HAJ 108.8 109.3
CAH CAJ HAJA 108.8 109.3
CAK CAI NAN 107.3 109.5
CAI CAK CAQ 112.6 109.5
CAK CAI HAI 110.2 109.5
CAK CAI HAIA 110.2 109.5
CAI CAK HAK 108.4 109.5
CAI CAK HAKA 108.4 109.5
CAI NAN CAR 121.3 120.0
NAN CAI HAI 110.2 109.4
NAN CAI HAIA 110.2 109.5
CAI NAN HNAN 119.3 119.9
CAJ CAQ CAK 121.0 118.0
CAQ CAJ HAJ 108.9 109.4
CAQ CAJ HAJA 108.9 109.4
CAQ CAK HAK 108.4 109.4
CAQ CAK HAKA 108.5 109.4
NAM NAL SAP 108.7 110.6
NAL NAM CAT 117.9 120.0
NAL SAP CAU 96.7 95.4
NAM CAT CAU 112.7 110.0
NAN CAR NAO 114.9 120.0
CAR NAN HNAN 119.4 120.0
CAR NAO CAS 129.7 120.0
CAR NAO HNAO 115.1 120.0
CAS NAO HNAO 115.2 119.9
SAP CAU CAT 104.1 104.0
HAF CAF HAFA 110.4 109.2
HAG CAG HAGA 111.3 109.8
HAH CAH HAHA 110.1 109.9
HAI CAI HAIA 108.8 109.5
HAJ CAJ HAJA 110.1 109.2
HAK CAK HAKA 110.5 109.5

Torsion Angles for TDU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CAI NAN CAR OAA 0.5 0.0
NAN CAR OAA NAO 177.4 180.0
OAA CAR NAN HNAN 180.5 180.0
OAA CAR NAO CAS 355.0 354.7
OAA CAR NAO HNAO 175.0 174.7
CAF CAB CAQ CAJ 359.4 0.4
CAF CAB CAQ CAK 179.5 180.5
CAQ CAB CAF HAB 180.0 180.4
CAB CAF CAG CAH 323.4 49.4
CAG CAF CAB HAF 240.0 239.8
CAG CAF CAB HAFA 120.0 120.2
CAB CAF CAG HAG 83.4 169.1
CAB CAF CAG HAGA 203.4 289.7
HAF CAF CAB HAFA 240.0 240.4
CAQ CAB CAF CAG 9.5 342.9
CAF CAB CAQ HAB 180.0 179.6
CAQ CAB CAF HAF 129.5 103.1
CAQ CAB CAF HAFA 249.4 222.7
CAH CAJ CAQ CAB 17.9 342.9
CAI CAK CAQ CAB 158.5 95.0
CAJ CAQ CAB CAK 179.9 180.0
CAB CAQ CAJ HAJ 257.9 222.7
CAB CAQ CAJ HAJA 137.9 103.1
CAB CAQ CAK HAK 38.6 334.9
CAB CAQ CAK HAKA 278.5 215.0
CAD CAC CAS CAE 0.9 359.9
CAD CAC CAS NAO 178.8 180.0
CAS CAC CAD HAC 180.0 180.4
CAC CAD CAT NAM 179.7 180.0
CAC CAD CAT CAU 0.6 359.9
CAT CAD CAC HAD 180.0 180.1
CAS CAC CAD CAT 359.4 0.1
CAD CAC CAS HAC 180.0 179.6
CAS CAC CAD HAD 179.4 180.0
CAC CAS CAE CAU 358.8 0.0
CAE CAS CAC NAO 182.1 180.0
CAC CAS CAE HAE 178.8 180.1
CAR NAO CAS CAC 167.3 146.7
CAC CAS NAO HNAO 347.3 326.7
CAT CAD CAC CAS 359.4 0.1
CAT CAD CAC HAC 179.4 179.7
CAC CAD CAT HAD 180.0 179.9
CAE CAU CAT CAD 359.1 0.1
NAL NAM CAT CAD 180.0 180.0
NAM CAT CAD CAU 179.1 180.1
SAP CAU CAT CAD 179.6 180.0
CAC CAS CAE NAO 177.8 180.0
CAE CAS CAC HAC 180.9 180.3
CAS CAE CAU SAP 180.5 180.0
CAS CAE CAU CAT 1.2 360.0
CAU CAE CAS HAE 180.0 180.0
CAR NAO CAS CAE 345.1 326.8
CAE CAS NAO HNAO 165.1 146.7
CAD CAT CAU CAE 359.1 0.1
CAU CAE CAS NAO 181.0 180.0
CAS CAE CAU HAE 180.0 180.0
NAL SAP CAU CAE 180.7 180.0
NAM CAT CAU CAE 179.8 180.0
SAP CAU CAE CAT 179.2 180.0
CAG CAF CAB CAQ 9.5 342.9
CAG CAF CAB HAB 189.5 162.6
CAB CAF CAG HAF 120.0 120.2
CAB CAF CAG HAFA 240.0 239.8
CAF CAG CAH CAJ 54.4 292.6
CAH CAG CAF HAG 240.0 240.3
CAH CAG CAF HAGA 120.0 119.7
CAF CAG CAH HAH 174.4 52.2
CAF CAG CAH HAHA 294.4 172.9
HAF CAF CAG HAFA 120.0 119.5
HAG CAG CAF HAGA 240.0 239.4
CAH CAG CAF HAF 203.4 289.2
CAH CAG CAF HAFA 83.4 169.7
CAF CAG CAH HAG 120.0 119.7
CAF CAG CAH HAGA 240.0 240.3
CAG CAH CAJ CAQ 317.3 49.4
CAJ CAH CAG HAH 240.0 240.3
CAJ CAH CAG HAHA 120.0 119.7
CAG CAH CAJ HAJ 77.3 169.7
CAG CAH CAJ HAJA 197.3 289.2
HAG CAG CAH HAGA 120.0 120.6
HAH CAH CAG HAHA 240.0 239.3
CAB CAQ CAJ CAH 17.9 342.9
CAJ CAH CAG HAG 294.4 172.9
CAJ CAH CAG HAGA 174.5 52.3
CAG CAH CAJ HAH 120.0 119.6
CAG CAH CAJ HAHA 240.0 240.3
CAH CAJ CAQ CAK 197.7 162.9
CAQ CAJ CAH HAJ 240.0 239.7
CAQ CAJ CAH HAJA 120.0 120.3
HAH CAH CAJ HAHA 120.0 120.7
HAJ CAJ CAH HAJA 240.0 240.5
CAB CAQ CAK CAI 158.5 95.0
CAK CAI NAN CAR 119.7 180.0
NAN CAI CAK HAI 240.0 240.0
NAN CAI CAK HAIA 120.0 120.0
CAK CAI NAN HNAN 299.7 0.0
CAJ CAQ CAK CAI 338.7 275.0
CAQ CAK CAI HAK 240.0 240.0
CAQ CAK CAI HAKA 120.0 120.0
HAI CAI CAK HAIA 240.0 240.0
HAK CAK CAI HAKA 240.0 239.9
OAA CAR NAN CAI 0.5 0.0
NAN CAI CAK CAQ 194.2 180.0
CAK CAI NAN HAI 120.0 120.1
CAK CAI NAN HAIA 240.0 240.0
NAN CAI CAK HAK 314.2 300.0
NAN CAI CAK HAKA 74.2 60.0
CAI NAN CAR NAO 178.2 180.0
CAR NAN CAI HNAN 180.0 180.0
HAI CAI NAN HAIA 120.0 120.0
CAB CAQ CAJ CAK 180.2 180.0
CAJ CAQ CAB HAB 179.4 180.8
CAQ CAJ CAH HAH 197.3 289.8
CAQ CAJ CAH HAHA 77.3 169.1
CAH CAJ CAQ HAJ 120.0 120.2
CAH CAJ CAQ HAJA 240.0 239.8
CAI CAK CAQ CAJ 338.7 275.0
CAJ CAQ CAK HAK 218.7 155.0
CAJ CAQ CAK HAKA 98.7 35.0
HAJ CAJ CAQ HAJA 120.0 119.6
CAB CAQ CAK CAJ 179.9 180.0
CAK CAQ CAB HAB 359.5 0.8
CAQ CAK CAI NAN 194.2 180.0
CAQ CAK CAI HAI 314.2 300.0
CAQ CAK CAI HAIA 74.2 60.0
CAI CAK CAQ HAK 120.0 120.0
CAI CAK CAQ HAKA 240.0 240.0
CAK CAQ CAJ HAJ 77.7 42.6
CAK CAQ CAJ HAJA 317.7 283.1
HAK CAK CAQ HAKA 120.0 120.0
CAD CAT NAM NAL 180.0 180.0
NAM NAL SAP CAU 359.6 0.1
NAL NAM CAT CAU 359.2 0.1
CAE CAU SAP NAL 180.7 180.0
SAP NAL NAM CAT 0.8 359.9
NAL SAP CAU CAT 0.0 360.0
CAD CAT NAM CAU 180.8 179.9
NAM CAT CAD HAD 359.7 0.1
CAE CAU CAT NAM 179.8 180.0
CAT NAM NAL SAP 0.8 359.9
SAP CAU CAT NAM 0.4 360.0
OAA CAR NAN NAO 182.4 180.0
CAR NAN CAI HAI 359.7 60.0
CAR NAN CAI HAIA 239.7 300.0
CAI NAN CAR HNAN 180.0 180.0
NAN CAR NAO CAS 177.4 174.7
NAN CAR NAO HNAO 357.5 354.7
OAA CAR NAO NAN 177.6 180.0
CAC CAS NAO CAR 167.3 146.7
CAE CAS NAO CAR 345.1 326.8
NAO CAR NAN HNAN 358.2 360.0
CAS NAO CAR HNAO 180.0 180.0
CAC CAS NAO CAE 182.2 180.0
NAO CAS CAC HAC 358.9 0.3
NAO CAS CAE CAU 181.0 180.0
NAO CAS CAE HAE 1.0 0.0
CAR NAO CAS HNAO 180.0 180.0
CAD CAT CAU SAP 179.6 180.0
CAE CAU SAP CAT 180.7 180.0
SAP CAU CAE HAE 0.5 360.0
NAM CAT CAU SAP 0.4 360.0
CAD CAT CAU NAM 179.3 180.1
CAU CAT CAD HAD 180.6 180.0
CAE CAU CAT SAP 179.4 180.0
CAT CAU CAE HAE 181.2 179.9
CAF CAB HAB CAQ 180.0 180.3
HAB CAB CAF CAG 189.5 162.6
HAB CAB CAF HAF 309.5 282.8
HAB CAB CAF HAFA 69.5 42.3
HAB CAB CAQ CAJ 179.4 180.8
HAB CAB CAQ CAK 359.5 0.8
CAD CAC HAC CAS 180.0 180.3
HAC CAC CAD CAT 179.4 179.7
HAC CAC CAD HAD 359.4 359.7
HAC CAC CAS CAE 180.9 180.3
HAC CAC CAS NAO 358.9 0.3
HAD CAD CAC CAS 179.4 180.0
CAC CAD HAD CAT 180.0 180.1
HAD CAD CAC HAC 359.4 359.7
HAD CAD CAT NAM 359.7 0.1
HAD CAD CAT CAU 180.6 180.0
CAS CAE HAE CAU 180.0 180.0
HAE CAE CAS NAO 1.0 0.0
HAE CAE CAU SAP 0.5 360.0
HAE CAE CAU CAT 181.2 179.9
HAF CAF CAB CAQ 129.5 103.1
CAB CAF HAF CAG 237.5 239.3
HAF CAF CAB HAB 309.5 282.8
CAB CAF HAF HAFA 118.7 119.7
HAF CAF CAG CAH 203.4 289.2
CAG CAF HAF HAFA 241.2 240.4
HAF CAF CAG HAG 323.4 48.9
HAF CAF CAG HAGA 83.4 169.5
HAFA CAF CAB CAQ 249.4 222.7
CAB CAF HAFA CAG 122.5 120.7
HAFA CAF CAB HAB 69.5 42.3
CAB CAF HAFA HAF 241.3 240.3
HAFA CAF CAG CAH 83.4 169.7
CAG CAF HAFA HAF 118.8 119.6
HAFA CAF CAG HAG 203.4 289.3
HAFA CAF CAG HAGA 323.4 50.0
CAF CAG HAG CAH 235.2 241.1
HAG CAG CAF HAF 323.4 48.9
HAG CAG CAF HAFA 203.4 289.3
CAF CAG HAG HAGA 117.6 120.5
HAG CAG CAH CAJ 294.4 172.9
CAH CAG HAG HAGA 242.4 239.5
HAG CAG CAH HAH 54.4 292.6
HAG CAG CAH HAHA 174.4 53.2
CAF CAG HAGA CAH 124.8 119.0
HAGA CAG CAF HAF 83.4 169.5
HAGA CAG CAF HAFA 323.4 50.0
CAF CAG HAGA HAG 242.4 239.5
HAGA CAG CAH CAJ 174.5 52.3
CAH CAG HAGA HAG 117.6 120.5
HAGA CAG CAH HAH 294.4 171.9
HAGA CAG CAH HAHA 54.5 292.6
CAG CAH HAH CAJ 238.6 241.1
HAH CAH CAG HAG 54.4 292.6
HAH CAH CAG HAGA 294.4 171.9
CAG CAH HAH HAHA 119.3 120.6
HAH CAH CAJ CAQ 197.3 289.8
CAJ CAH HAH HAHA 240.7 239.4
HAH CAH CAJ HAJ 317.3 50.0
HAH CAH CAJ HAJA 77.3 169.5
CAG CAH HAHA CAJ 121.4 118.9
HAHA CAH CAG HAG 174.4 53.2
HAHA CAH CAG HAGA 54.5 292.6
CAG CAH HAHA HAH 240.7 239.5
HAHA CAH CAJ CAQ 77.3 169.1
CAJ CAH HAHA HAH 119.3 120.6
HAHA CAH CAJ HAJ 197.3 289.3
HAHA CAH CAJ HAJA 317.2 48.8
CAK CAI HAI NAN 241.8 240.0
HAI CAI CAK CAQ 314.2 300.0
CAK CAI HAI HAIA 120.9 120.0
HAI CAI CAK HAK 74.2 60.0
HAI CAI CAK HAKA 194.2 180.0
HAI CAI NAN CAR 359.7 60.0
NAN CAI HAI HAIA 239.1 240.0
HAI CAI NAN HNAN 179.7 240.0
CAK CAI HAIA NAN 118.2 120.0
HAIA CAI CAK CAQ 74.2 60.0
CAK CAI HAIA HAI 239.1 240.0
HAIA CAI CAK HAK 194.2 180.0
HAIA CAI CAK HAKA 314.2 300.0
HAIA CAI NAN CAR 239.7 300.0
NAN CAI HAIA HAI 120.9 120.0
HAIA CAI NAN HNAN 59.7 120.0
CAH CAJ HAJ CAQ 238.4 239.3
HAJ CAJ CAH HAH 317.3 50.0
HAJ CAJ CAH HAHA 197.3 289.3
CAH CAJ HAJ HAJA 119.2 119.6
HAJ CAJ CAQ CAK 77.7 42.6
CAQ CAJ HAJ HAJA 240.7 240.3
CAH CAJ HAJA CAQ 121.6 120.7
HAJA CAJ CAH HAH 77.3 169.5
HAJA CAJ CAH HAHA 317.2 48.8
CAH CAJ HAJA HAJ 240.8 240.4
HAJA CAJ CAQ CAK 317.7 283.1
CAQ CAJ HAJA HAJ 119.2 119.7
HAK CAK CAI NAN 314.2 300.0
CAI CAK HAK CAQ 237.4 240.0
HAK CAK CAI HAI 74.2 60.0
HAK CAK CAI HAIA 194.2 180.0
CAI CAK HAK HAKA 118.7 120.1
CAQ CAK HAK HAKA 241.3 240.1
HAKA CAK CAI NAN 74.2 60.0
CAI CAK HAKA CAQ 122.6 120.0
HAKA CAK CAI HAI 194.2 180.0
HAKA CAK CAI HAIA 314.2 300.0
CAI CAK HAKA HAK 241.3 239.9
CAQ CAK HAKA HAK 118.7 119.9
CAI NAN HNAN CAR 180.0 180.0
HNAN NAN CAI HAI 179.7 240.0
HNAN NAN CAI HAIA 59.7 120.0
HNAN NAN CAR NAO 358.2 360.0
CAR NAO HNAO CAS 180.0 180.0