PDB Chemical Component TDD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TDD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.454 |
1.469 |
| CA |
CB |
1.553 |
1.530 |
| CA |
C |
1.529 |
1.507 |
| CB |
CG1 |
1.543 |
1.530 |
| CB |
CG2 |
1.542 |
1.530 |
| CB |
CG3 |
1.538 |
1.531 |
| C |
O |
1.233 |
1.208 |
| C |
OXT |
1.332 |
1.342 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.090 |
| CG1 |
HG11 |
1.100 |
1.090 |
| CG1 |
HG12 |
1.100 |
1.090 |
| CG1 |
HG13 |
1.100 |
1.090 |
| CG2 |
HG21 |
1.100 |
1.090 |
| CG2 |
HG22 |
1.100 |
1.090 |
| CG2 |
HG23 |
1.100 |
1.089 |
| CG3 |
HG31 |
1.100 |
1.089 |
| CG3 |
HG32 |
1.100 |
1.090 |
| CG3 |
HG33 |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for TDD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
CB |
110.7 |
109.5 |
| N |
CA |
C |
108.0 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
HA |
112.7 |
109.5 |
| CB |
CA |
C |
117.0 |
109.5 |
| CA |
CB |
CG1 |
113.4 |
109.5 |
| CA |
CB |
CG2 |
108.8 |
109.4 |
| CA |
CB |
CG3 |
111.5 |
109.4 |
| CB |
CA |
HA |
102.7 |
109.5 |
| CA |
C |
O |
121.7 |
120.0 |
| CA |
C |
OXT |
115.5 |
120.0 |
| C |
CA |
HA |
105.7 |
109.5 |
| CG1 |
CB |
CG2 |
107.6 |
109.5 |
| CG1 |
CB |
CG3 |
109.2 |
109.5 |
| CB |
CG1 |
HG11 |
109.5 |
109.5 |
| CB |
CG1 |
HG12 |
109.5 |
109.5 |
| CB |
CG1 |
HG13 |
109.4 |
109.4 |
| CG2 |
CB |
CG3 |
106.1 |
109.5 |
| CB |
CG2 |
HG21 |
109.5 |
109.5 |
| CB |
CG2 |
HG22 |
109.5 |
109.4 |
| CB |
CG2 |
HG23 |
109.5 |
109.5 |
| CB |
CG3 |
HG31 |
109.5 |
109.5 |
| CB |
CG3 |
HG32 |
109.5 |
109.4 |
| CB |
CG3 |
HG33 |
109.4 |
109.5 |
| O |
C |
OXT |
122.8 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.5 |
110.9 |
| HG11 |
CG1 |
HG12 |
109.5 |
109.5 |
| HG11 |
CG1 |
HG13 |
109.4 |
109.4 |
| HG12 |
CG1 |
HG13 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG22 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG23 |
109.4 |
109.5 |
| HG22 |
CG2 |
HG23 |
109.5 |
109.4 |
| HG31 |
CG3 |
HG32 |
109.5 |
109.5 |
| HG31 |
CG3 |
HG33 |
109.5 |
109.5 |
| HG32 |
CG3 |
HG33 |
109.5 |
109.5 |
Torsion Angles for TDD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB |
CA |
N |
C |
129.3 |
120.0 |
| N |
CA |
CB |
CG1 |
312.1 |
60.0 |
| N |
CA |
CB |
CG2 |
71.7 |
180.0 |
| N |
CA |
CB |
CG3 |
188.4 |
300.0 |
| CB |
CA |
N |
HA |
245.7 |
240.0 |
| N |
CA |
C |
O |
85.6 |
20.0 |
| N |
CA |
C |
OXT |
264.6 |
200.0 |
| C |
CA |
N |
HA |
116.4 |
120.0 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| N |
CA |
CB |
C |
235.7 |
240.0 |
| CB |
CA |
N |
H |
174.3 |
60.1 |
| CB |
CA |
N |
H2 |
294.3 |
183.9 |
| N |
CA |
CB |
HA |
120.5 |
120.0 |
| CB |
CA |
C |
O |
320.0 |
260.0 |
| CB |
CA |
C |
OXT |
139.0 |
80.0 |
| C |
CA |
CB |
HA |
244.8 |
240.0 |
| CG1 |
CB |
CA |
CG2 |
240.4 |
240.0 |
| CG1 |
CB |
CA |
CG3 |
123.7 |
120.0 |
| CA |
CB |
CG1 |
HG11 |
279.7 |
59.9 |
| CA |
CB |
CG1 |
HG12 |
39.7 |
180.0 |
| CA |
CB |
CG1 |
HG13 |
159.7 |
300.0 |
| CG2 |
CB |
CA |
CG3 |
243.3 |
240.0 |
| CA |
CB |
CG2 |
HG21 |
257.0 |
60.0 |
| CA |
CB |
CG2 |
HG22 |
17.0 |
180.0 |
| CA |
CB |
CG2 |
HG23 |
137.0 |
299.9 |
| CA |
CB |
CG3 |
HG31 |
182.7 |
60.0 |
| CA |
CB |
CG3 |
HG32 |
302.7 |
180.0 |
| CA |
CB |
CG3 |
HG33 |
62.7 |
299.9 |
| N |
CA |
C |
CB |
125.6 |
120.0 |
| C |
CA |
N |
H |
45.0 |
300.1 |
| C |
CA |
N |
H2 |
165.0 |
63.9 |
| N |
CA |
C |
HA |
239.2 |
240.0 |
| C |
CA |
CB |
CG1 |
76.4 |
180.0 |
| C |
CA |
CB |
CG2 |
196.0 |
300.0 |
| C |
CA |
CB |
CG3 |
312.6 |
60.0 |
| CB |
CA |
C |
HA |
113.5 |
120.0 |
| O |
C |
CA |
OXT |
181.0 |
180.0 |
| CA |
C |
OXT |
HXT |
180.9 |
180.0 |
| CG1 |
CB |
CA |
C |
76.4 |
180.0 |
| CA |
CB |
CG1 |
CG2 |
120.3 |
120.0 |
| CA |
CB |
CG1 |
CG3 |
235.0 |
240.0 |
| CG1 |
CB |
CA |
HA |
191.6 |
300.0 |
| CG2 |
CB |
CG1 |
CG3 |
114.7 |
120.1 |
| CG1 |
CB |
CG2 |
HG21 |
20.1 |
180.0 |
| CG1 |
CB |
CG2 |
HG22 |
140.1 |
300.0 |
| CG1 |
CB |
CG2 |
HG23 |
260.1 |
59.9 |
| CG1 |
CB |
CG3 |
HG31 |
56.6 |
300.0 |
| CG1 |
CB |
CG3 |
HG32 |
176.7 |
60.0 |
| CG1 |
CB |
CG3 |
HG33 |
296.6 |
180.0 |
| HG11 |
CG1 |
CB |
HG12 |
240.0 |
239.9 |
| HG11 |
CG1 |
CB |
HG13 |
120.0 |
119.9 |
| HG12 |
CG1 |
CB |
HG13 |
240.0 |
240.0 |
| CG2 |
CB |
CA |
C |
196.0 |
300.0 |
| CA |
CB |
CG2 |
CG1 |
236.8 |
240.0 |
| CA |
CB |
CG2 |
CG3 |
120.1 |
119.9 |
| CG2 |
CB |
CA |
HA |
311.2 |
60.0 |
| CG1 |
CB |
CG2 |
CG3 |
243.3 |
239.9 |
| CG2 |
CB |
CG1 |
HG11 |
159.4 |
300.0 |
| CG2 |
CB |
CG1 |
HG12 |
279.4 |
60.1 |
| CG2 |
CB |
CG1 |
HG13 |
39.4 |
180.0 |
| CG2 |
CB |
CG3 |
HG31 |
301.0 |
180.0 |
| CG2 |
CB |
CG3 |
HG32 |
61.0 |
300.0 |
| CG2 |
CB |
CG3 |
HG33 |
181.0 |
59.9 |
| HG21 |
CG2 |
CB |
HG22 |
240.0 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
120.0 |
120.1 |
| HG22 |
CG2 |
CB |
HG23 |
240.0 |
240.1 |
| CG3 |
CB |
CA |
C |
312.6 |
60.0 |
| CA |
CB |
CG3 |
CG1 |
126.1 |
120.0 |
| CA |
CB |
CG3 |
CG2 |
241.7 |
240.0 |
| CG3 |
CB |
CA |
HA |
67.9 |
180.0 |
| CG1 |
CB |
CG3 |
CG2 |
115.6 |
120.1 |
| CG3 |
CB |
CG1 |
HG11 |
44.7 |
179.9 |
| CG3 |
CB |
CG1 |
HG12 |
164.7 |
300.0 |
| CG3 |
CB |
CG1 |
HG13 |
284.7 |
60.0 |
| CG3 |
CB |
CG2 |
HG21 |
136.9 |
300.1 |
| CG3 |
CB |
CG2 |
HG22 |
256.9 |
60.1 |
| CG3 |
CB |
CG2 |
HG23 |
16.9 |
180.0 |
| HG31 |
CG3 |
CB |
HG32 |
240.0 |
240.0 |
| HG31 |
CG3 |
CB |
HG33 |
120.0 |
120.1 |
| HG32 |
CG3 |
CB |
HG33 |
240.0 |
240.1 |
| CA |
C |
O |
OXT |
179.0 |
180.0 |
| O |
C |
CA |
HA |
206.4 |
140.0 |
| O |
C |
OXT |
HXT |
360.0 |
0.0 |
| CA |
C |
OXT |
O |
181.0 |
180.0 |
| OXT |
C |
CA |
HA |
25.5 |
320.0 |
| H |
N |
CA |
CB |
174.3 |
60.1 |
| H |
N |
CA |
C |
45.0 |
300.1 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
HA |
288.6 |
180.1 |
| H2 |
N |
CA |
CB |
294.3 |
183.9 |
| H2 |
N |
CA |
C |
165.0 |
63.9 |
| CA |
N |
H2 |
H |
239.9 |
236.1 |
| H2 |
N |
CA |
HA |
48.6 |
304.0 |
| N |
CA |
HA |
CB |
240.9 |
240.0 |
| N |
CA |
HA |
C |
117.7 |
120.0 |
| HA |
CA |
N |
H |
288.6 |
180.1 |
| HA |
CA |
N |
H2 |
48.6 |
304.0 |
| CB |
CA |
HA |
C |
236.8 |
240.0 |
| HA |
CA |
CB |
CG1 |
191.6 |
300.0 |
| HA |
CA |
CB |
CG2 |
311.2 |
60.0 |
| HA |
CA |
CB |
CG3 |
67.9 |
180.0 |
| HA |
CA |
C |
O |
206.4 |
140.0 |
| HA |
CA |
C |
OXT |
25.5 |
320.0 |
| HG11 |
CG1 |
CB |
CG2 |
159.4 |
300.0 |
| HG11 |
CG1 |
CB |
CG3 |
44.7 |
179.9 |
| CB |
CG1 |
HG11 |
HG12 |
120.0 |
120.0 |
| CB |
CG1 |
HG11 |
HG13 |
240.0 |
240.1 |
| HG12 |
CG1 |
HG11 |
HG13 |
120.0 |
120.0 |
| HG12 |
CG1 |
CB |
CG2 |
279.4 |
60.1 |
| HG12 |
CG1 |
CB |
CG3 |
164.7 |
300.0 |
| CB |
CG1 |
HG12 |
HG11 |
239.9 |
240.0 |
| CB |
CG1 |
HG12 |
HG13 |
120.0 |
119.9 |
| HG11 |
CG1 |
HG12 |
HG13 |
240.0 |
240.0 |
| HG13 |
CG1 |
CB |
CG2 |
39.4 |
180.0 |
| HG13 |
CG1 |
CB |
CG3 |
284.7 |
60.0 |
| CB |
CG1 |
HG13 |
HG11 |
120.0 |
120.0 |
| CB |
CG1 |
HG13 |
HG12 |
240.0 |
240.0 |
| HG11 |
CG1 |
HG13 |
HG12 |
120.0 |
120.1 |
| HG21 |
CG2 |
CB |
CG3 |
136.9 |
300.1 |
| CB |
CG2 |
HG21 |
HG22 |
120.0 |
119.9 |
| CB |
CG2 |
HG21 |
HG23 |
240.0 |
239.9 |
| HG22 |
CG2 |
HG21 |
HG23 |
120.0 |
120.0 |
| HG22 |
CG2 |
CB |
CG3 |
256.9 |
60.1 |
| CB |
CG2 |
HG22 |
HG21 |
240.0 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
120.0 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
240.0 |
239.9 |
| HG23 |
CG2 |
CB |
CG3 |
16.9 |
180.0 |
| CB |
CG2 |
HG23 |
HG21 |
120.0 |
120.1 |
| CB |
CG2 |
HG23 |
HG22 |
240.0 |
240.1 |
| HG21 |
CG2 |
HG23 |
HG22 |
120.0 |
120.0 |
| CB |
CG3 |
HG31 |
HG32 |
120.0 |
119.9 |
| CB |
CG3 |
HG31 |
HG33 |
240.0 |
240.0 |
| HG32 |
CG3 |
HG31 |
HG33 |
120.0 |
120.1 |
| CB |
CG3 |
HG32 |
HG31 |
240.0 |
240.1 |
| CB |
CG3 |
HG32 |
HG33 |
119.9 |
119.9 |
| HG31 |
CG3 |
HG32 |
HG33 |
240.0 |
239.9 |
| CB |
CG3 |
HG33 |
HG31 |
120.0 |
120.0 |
| CB |
CG3 |
HG33 |
HG32 |
240.0 |
240.1 |
| HG31 |
CG3 |
HG33 |
HG32 |
120.0 |
120.1 |