PDB Chemical Component TD4
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TD4
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N02 |
O01 |
1.400 |
1.416 |
O01 |
HO01 |
0.950 |
0.967 |
C03 |
N02 |
1.440 |
1.465 |
N02 |
C12 |
1.444 |
1.348 |
C03 |
C04 |
1.519 |
1.530 |
C03 |
H03 |
1.100 |
1.091 |
C03 |
H03A |
1.100 |
1.089 |
C05 |
C04 |
1.513 |
1.530 |
C04 |
H04 |
1.100 |
1.090 |
C04 |
H04A |
1.100 |
1.090 |
C06 |
C05 |
1.518 |
1.530 |
C05 |
H05 |
1.100 |
1.089 |
C05 |
H05A |
1.100 |
1.090 |
O07 |
C06 |
1.390 |
1.429 |
C06 |
H06 |
1.100 |
1.090 |
C06 |
H06A |
1.100 |
1.090 |
O07 |
P08 |
1.636 |
1.609 |
O09 |
P08 |
1.634 |
1.481 |
O11 |
P08 |
1.456 |
1.609 |
P08 |
O10 |
1.637 |
1.610 |
O10 |
HO10 |
0.950 |
0.966 |
O11 |
HO11 |
0.949 |
0.968 |
C14 |
C12 |
1.531 |
1.507 |
C12 |
O13 |
1.196 |
1.213 |
C14 |
O15 |
1.395 |
1.429 |
C14 |
H14 |
1.100 |
1.090 |
C14 |
H14A |
1.100 |
1.090 |
P16 |
O15 |
1.651 |
1.610 |
O19 |
P16 |
1.455 |
1.481 |
P16 |
O18 |
1.636 |
1.610 |
P16 |
O17 |
1.636 |
1.610 |
O17 |
HO17 |
0.949 |
0.967 |
O18 |
HO18 |
0.950 |
0.967 |
Bond Angles for TD4
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N02 |
O01 |
HO01 |
109.5 |
114.0 |
C03 |
N02 |
C12 |
118.3 |
120.0 |
N02 |
C12 |
O13 |
119.9 |
120.0 |
C04 |
C03 |
H03 |
108.3 |
109.4 |
C04 |
C03 |
H03A |
108.4 |
109.5 |
C03 |
C04 |
H04 |
107.4 |
109.4 |
C03 |
C04 |
H04A |
107.3 |
109.5 |
H03 |
C03 |
H03A |
110.6 |
109.5 |
C05 |
C04 |
H04 |
107.3 |
109.5 |
C05 |
C04 |
H04A |
107.4 |
109.5 |
H04 |
C04 |
H04A |
111.5 |
109.5 |
C06 |
C05 |
H05 |
107.5 |
109.5 |
C06 |
C05 |
H05A |
107.5 |
109.4 |
H05 |
C05 |
H05A |
111.4 |
109.4 |
O07 |
C06 |
H06 |
107.6 |
109.5 |
O07 |
C06 |
H06A |
107.6 |
109.5 |
H06 |
C06 |
H06A |
111.3 |
109.4 |
O07 |
P08 |
O10 |
109.0 |
109.5 |
O09 |
P08 |
O10 |
110.1 |
109.4 |
P08 |
O10 |
HO10 |
109.5 |
114.0 |
O15 |
C14 |
H14 |
107.5 |
109.5 |
O15 |
C14 |
H14A |
107.6 |
109.5 |
H14 |
C14 |
H14A |
111.4 |
109.5 |
O17 |
P16 |
O18 |
111.2 |
109.5 |
P16 |
O18 |
HO18 |
109.5 |
114.0 |
P16 |
O17 |
HO17 |
109.5 |
114.0 |
Torsion Angles for TD4
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C03 |
N02 |
O01 |
HO01 |
196.1 |
0.0 |
C03 |
N02 |
C12 |
O13 |
173.5 |
359.9 |
C12 |
N02 |
O01 |
HO01 |
352.0 |
180.0 |
C04 |
C03 |
N02 |
C12 |
280.4 |
75.1 |
H03 |
C03 |
C04 |
H03A |
120.0 |
120.0 |
C05 |
C04 |
C03 |
H04 |
240.0 |
240.0 |
C05 |
C04 |
C03 |
H04A |
120.0 |
120.0 |
H04 |
C04 |
C03 |
H04A |
240.0 |
240.0 |
H03 |
C03 |
N02 |
C12 |
40.4 |
195.0 |
C04 |
C03 |
H03 |
H03A |
241.4 |
240.0 |
H03 |
C03 |
C04 |
H04 |
244.2 |
180.0 |
H03 |
C03 |
C04 |
H04A |
4.2 |
300.0 |
H03A |
C03 |
N02 |
C12 |
160.5 |
315.1 |
C04 |
C03 |
H03A |
H03 |
118.6 |
120.0 |
H03A |
C03 |
C04 |
H04 |
124.2 |
60.0 |
H03A |
C03 |
C04 |
H04A |
244.1 |
180.0 |
C05 |
C04 |
C03 |
H03 |
124.2 |
60.0 |
C05 |
C04 |
C03 |
H03A |
4.2 |
300.0 |
C03 |
C04 |
C05 |
H04 |
120.0 |
120.0 |
C03 |
C04 |
C05 |
H04A |
240.0 |
240.0 |
H04 |
C04 |
C05 |
H04A |
120.0 |
120.0 |
H04 |
C04 |
C03 |
H03 |
244.2 |
180.0 |
H04 |
C04 |
C03 |
H03A |
124.2 |
60.0 |
C03 |
C04 |
H04 |
H04A |
117.3 |
120.0 |
C05 |
C04 |
H04 |
H04A |
242.7 |
240.0 |
H04A |
C04 |
C03 |
H03 |
4.2 |
300.0 |
H04A |
C04 |
C03 |
H03A |
244.1 |
180.0 |
C03 |
C04 |
H04A |
H04 |
242.7 |
240.1 |
C05 |
C04 |
H04A |
H04 |
117.3 |
120.0 |
C06 |
C05 |
C04 |
H04 |
75.5 |
60.0 |
C06 |
C05 |
C04 |
H04A |
315.5 |
299.9 |
H05 |
C05 |
C06 |
H05A |
120.0 |
120.0 |
H05 |
C05 |
C04 |
H04 |
195.5 |
180.1 |
H05 |
C05 |
C04 |
H04A |
75.5 |
60.0 |
C06 |
C05 |
H05 |
H05A |
242.5 |
240.0 |
H05A |
C05 |
C04 |
H04 |
315.5 |
300.0 |
H05A |
C05 |
C04 |
H04A |
195.5 |
180.0 |
C06 |
C05 |
H05A |
H05 |
117.5 |
120.1 |
O07 |
C06 |
C05 |
H05 |
0.3 |
60.0 |
O07 |
C06 |
C05 |
H05A |
240.2 |
300.0 |
H06 |
C06 |
O07 |
H06A |
120.1 |
120.0 |
H06 |
C06 |
C05 |
H05 |
120.3 |
180.0 |
H06 |
C06 |
C05 |
H05A |
0.2 |
60.0 |
O07 |
C06 |
H06 |
H06A |
242.3 |
240.0 |
H06A |
C06 |
C05 |
H05 |
240.3 |
300.0 |
H06A |
C06 |
C05 |
H05A |
120.3 |
180.0 |
O07 |
C06 |
H06A |
H06 |
117.7 |
120.0 |
P08 |
O07 |
C06 |
H06 |
18.0 |
60.0 |
P08 |
O07 |
C06 |
H06A |
257.9 |
300.0 |
O09 |
P08 |
O07 |
O10 |
240.3 |
240.1 |
O07 |
P08 |
O10 |
HO10 |
241.6 |
180.0 |
O07 |
P08 |
O09 |
O10 |
119.0 |
120.0 |
O09 |
P08 |
O10 |
HO10 |
360.0 |
300.0 |
O11 |
P08 |
O10 |
HO10 |
122.4 |
60.0 |
H14 |
C14 |
O15 |
H14A |
120.0 |
120.1 |
O15 |
C14 |
H14 |
H14A |
242.4 |
240.0 |
O15 |
C14 |
H14A |
H14 |
117.6 |
120.1 |
P16 |
O15 |
C14 |
H14 |
79.2 |
60.0 |
P16 |
O15 |
C14 |
H14A |
319.2 |
299.9 |
O19 |
P16 |
O18 |
HO18 |
360.0 |
180.0 |
O19 |
P16 |
O17 |
HO17 |
0.0 |
300.0 |
O18 |
P16 |
O17 |
HO17 |
238.0 |
60.0 |
O17 |
P16 |
O18 |
HO18 |
120.4 |
60.0 |
HO17 |
O17 |
P16 |
O18 |
238.0 |
60.0 |