PDB Chemical Component TD4

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TD4

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N02 O01 1.400 1.416
O01 HO01 0.950 0.967
C03 N02 1.440 1.465
N02 C12 1.444 1.348
C03 C04 1.519 1.530
C03 H03 1.100 1.091
C03 H03A 1.100 1.089
C05 C04 1.513 1.530
C04 H04 1.100 1.090
C04 H04A 1.100 1.090
C06 C05 1.518 1.530
C05 H05 1.100 1.089
C05 H05A 1.100 1.090
O07 C06 1.390 1.429
C06 H06 1.100 1.090
C06 H06A 1.100 1.090
O07 P08 1.636 1.609
O09 P08 1.634 1.481
O11 P08 1.456 1.609
P08 O10 1.637 1.610
O10 HO10 0.950 0.966
O11 HO11 0.949 0.968
C14 C12 1.531 1.507
C12 O13 1.196 1.213
C14 O15 1.395 1.429
C14 H14 1.100 1.090
C14 H14A 1.100 1.090
P16 O15 1.651 1.610
O19 P16 1.455 1.481
P16 O18 1.636 1.610
P16 O17 1.636 1.610
O17 HO17 0.949 0.967
O18 HO18 0.950 0.967

Bond Angles for TD4

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N02 O01 HO01 109.5 114.0
C03 N02 C12 118.3 120.0
N02 C12 O13 119.9 120.0
C04 C03 H03 108.3 109.4
C04 C03 H03A 108.4 109.5
C03 C04 H04 107.4 109.4
C03 C04 H04A 107.3 109.5
H03 C03 H03A 110.6 109.5
C05 C04 H04 107.3 109.5
C05 C04 H04A 107.4 109.5
H04 C04 H04A 111.5 109.5
C06 C05 H05 107.5 109.5
C06 C05 H05A 107.5 109.4
H05 C05 H05A 111.4 109.4
O07 C06 H06 107.6 109.5
O07 C06 H06A 107.6 109.5
H06 C06 H06A 111.3 109.4
O07 P08 O10 109.0 109.5
O09 P08 O10 110.1 109.4
P08 O10 HO10 109.5 114.0
O15 C14 H14 107.5 109.5
O15 C14 H14A 107.6 109.5
H14 C14 H14A 111.4 109.5
O17 P16 O18 111.2 109.5
P16 O18 HO18 109.5 114.0
P16 O17 HO17 109.5 114.0

Torsion Angles for TD4

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C03 N02 O01 HO01 196.1 0.0
C03 N02 C12 O13 173.5 359.9
C12 N02 O01 HO01 352.0 180.0
C04 C03 N02 C12 280.4 75.1
H03 C03 C04 H03A 120.0 120.0
C05 C04 C03 H04 240.0 240.0
C05 C04 C03 H04A 120.0 120.0
H04 C04 C03 H04A 240.0 240.0
H03 C03 N02 C12 40.4 195.0
C04 C03 H03 H03A 241.4 240.0
H03 C03 C04 H04 244.2 180.0
H03 C03 C04 H04A 4.2 300.0
H03A C03 N02 C12 160.5 315.1
C04 C03 H03A H03 118.6 120.0
H03A C03 C04 H04 124.2 60.0
H03A C03 C04 H04A 244.1 180.0
C05 C04 C03 H03 124.2 60.0
C05 C04 C03 H03A 4.2 300.0
C03 C04 C05 H04 120.0 120.0
C03 C04 C05 H04A 240.0 240.0
H04 C04 C05 H04A 120.0 120.0
H04 C04 C03 H03 244.2 180.0
H04 C04 C03 H03A 124.2 60.0
C03 C04 H04 H04A 117.3 120.0
C05 C04 H04 H04A 242.7 240.0
H04A C04 C03 H03 4.2 300.0
H04A C04 C03 H03A 244.1 180.0
C03 C04 H04A H04 242.7 240.1
C05 C04 H04A H04 117.3 120.0
C06 C05 C04 H04 75.5 60.0
C06 C05 C04 H04A 315.5 299.9
H05 C05 C06 H05A 120.0 120.0
H05 C05 C04 H04 195.5 180.1
H05 C05 C04 H04A 75.5 60.0
C06 C05 H05 H05A 242.5 240.0
H05A C05 C04 H04 315.5 300.0
H05A C05 C04 H04A 195.5 180.0
C06 C05 H05A H05 117.5 120.1
O07 C06 C05 H05 0.3 60.0
O07 C06 C05 H05A 240.2 300.0
H06 C06 O07 H06A 120.1 120.0
H06 C06 C05 H05 120.3 180.0
H06 C06 C05 H05A 0.2 60.0
O07 C06 H06 H06A 242.3 240.0
H06A C06 C05 H05 240.3 300.0
H06A C06 C05 H05A 120.3 180.0
O07 C06 H06A H06 117.7 120.0
P08 O07 C06 H06 18.0 60.0
P08 O07 C06 H06A 257.9 300.0
O09 P08 O07 O10 240.3 240.1
O07 P08 O10 HO10 241.6 180.0
O07 P08 O09 O10 119.0 120.0
O09 P08 O10 HO10 360.0 300.0
O11 P08 O10 HO10 122.4 60.0
H14 C14 O15 H14A 120.0 120.1
O15 C14 H14 H14A 242.4 240.0
O15 C14 H14A H14 117.6 120.1
P16 O15 C14 H14 79.2 60.0
P16 O15 C14 H14A 319.2 299.9
O19 P16 O18 HO18 360.0 180.0
O19 P16 O17 HO17 0.0 300.0
O18 P16 O17 HO17 238.0 60.0
O17 P16 O18 HO18 120.4 60.0
HO17 O17 P16 O18 238.0 60.0