PDB Chemical Component TD2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TD2

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O61	C61	1.385	1.429
C61	C51	1.479	1.530
C51	O51	1.436	1.429
C51	C41	1.492	1.530
O51	C11	1.466	1.429
O6	C6	1.351	1.428
C5	C6	1.456	1.530
C5	O5	1.454	1.428
C5	C4	1.495	1.531
C41	O41	1.427	1.429
C41	C31	1.466	1.532
O5	C1	1.444	1.429
C4	C3	1.443	1.532
C4	O4	1.381	1.429
C1	C2	1.511	1.531
C1	S1	1.749	1.814
C3	C2	1.483	1.532
C3	N71	1.450	1.466
N8	N71	1.294	1.286
N8	N9	1.256	1.286
C11	S1	1.746	1.814
C11	C21	1.484	1.531
O21	C2	1.386	1.429
C31	C21	1.489	1.530
C31	N7	1.474	1.465
N71	C71	1.309	1.353
N9	C10	1.315	1.345
C21	O2	1.420	1.429
N11	N7	1.237	1.286
N11	N10	1.270	1.286
N7	C8	1.363	1.352
C71	C10	1.440	1.365
N10	C9	1.324	1.345
C10	C22	1.527	1.484
C8	C9	1.389	1.365
C9	C12	1.504	1.485
C23	C22	1.402	1.393
C23	C24	1.391	1.381
C22	C27	1.329	1.393
C24	C25	1.350	1.384
C12	C13	1.359	1.393
C12	C17	1.372	1.394
C27	C26	1.413	1.382
C13	C14	1.424	1.382
C17	C16	1.423	1.381
C25	C26	1.363	1.385
C26	F28	1.334	1.352
C14	F18	1.308	1.352
C14	C15	1.403	1.385
C16	C15	1.342	1.382
C1	H1	1.100	1.090
C2	H2	1.100	1.090
C3	H3	1.100	1.090
C4	H4	1.100	1.089
C5	H5	1.100	1.090
C6	H6	1.100	1.090
C6	H7	1.100	1.090
C13	H8	1.080	1.080
C11	H9	1.100	1.090
C51	H10	1.100	1.090
C61	H11	1.100	1.090
C61	H12	1.099	1.090
O6	H13	0.950	0.968
O61	H14	0.950	0.968
C41	H15	1.101	1.090
O4	H16	0.949	0.966
O41	H17	0.950	0.967
C31	H18	1.100	1.090
C21	H19	1.100	1.090
O2	H20	0.949	0.967
O21	H21	0.950	0.967
C8	H22	1.080	1.080
C71	H23	1.080	1.080
C15	H24	1.080	1.080
C16	H25	1.080	1.080
C17	H26	1.080	1.080
C23	H27	1.080	1.080
C24	H28	1.080	1.080
C25	H29	1.080	1.080
C27	H30	1.080	1.080

Bond Angles for TD2

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O61	C61	H11	109.9	109.5
O61	C61	H12	109.9	109.5
C61	C51	C41	112.1	109.5
C61	C51	H10	108.3	109.5
C51	C41	O41	110.3	109.5
C51	C41	C31	110.6	109.1
C41	C51	H10	108.2	109.5
C51	C41	H15	109.4	109.5
O51	C11	C21	113.0	109.4
O51	C11	H9	109.0	109.5
O6	C6	H6	108.5	109.5
O6	C6	H7	108.5	109.5
C6	C5	O5	110.0	109.5
C6	C5	H5	108.8	109.5
C5	C6	H6	108.5	109.5
C5	C6	H7	108.5	109.5
O5	C5	H5	108.9	109.5
C5	C4	O4	110.6	109.5
C5	C4	H4	108.8	109.6
O41	C41	C31	106.3	109.5
O41	C41	H15	110.4	109.5
C41	O41	H17	109.5	114.0
C41	C31	C21	119.5	109.1
C41	C31	N7	114.3	109.6
C31	C41	H15	109.8	109.6
C41	C31	H18	100.3	109.5
O5	C1	H1	108.8	109.5
C4	C3	N71	109.4	109.6
C4	C3	H3	106.6	109.6
O4	C4	H4	110.5	109.6
C4	O4	H16	109.5	114.0
C2	C1	S1	113.9	109.5
C2	C1	H1	108.0	109.5
C1	C2	H2	106.7	109.5
C1	S1	C11	107.8	103.0
S1	C1	H1	105.4	109.5
C3	C2	H2	107.1	109.5
C3	N71	C71	130.7	125.7
N71	C3	H3	106.6	109.5
N8	N71	C71	108.5	108.5
N8	N9	C10	110.5	108.8
S1	C11	C21	114.8	109.5
S1	C11	H9	105.9	109.5
C11	C21	C31	113.3	109.2
C11	C21	O2	103.6	109.5
C21	C11	H9	108.8	109.5
C11	C21	H19	110.6	109.5
O21	C2	H2	108.2	109.5
C21	C31	N7	116.8	109.6
C31	C21	O2	106.8	109.5
C21	C31	H18	100.2	109.6
C31	C21	H19	110.6	109.5
C31	N7	C8	128.7	125.7
N7	C31	H18	100.3	109.6
N71	C71	C10	105.6	106.0
N71	C71	H23	127.2	127.0
N9	C10	C22	123.0	126.9
O2	C21	H19	111.6	109.5
C21	O2	H20	109.5	114.0
N7	C8	C9	104.4	106.0
N7	C8	H22	127.8	127.0
C71	C10	C22	133.1	126.9
C10	C22	C27	124.1	120.1
C9	C8	H22	127.8	127.0
C9	C12	C17	119.9	120.1
C23	C22	C27	118.5	119.8
C23	C24	C25	119.0	120.1
C24	C23	H27	119.2	120.0
C23	C24	H28	120.5	120.0
C22	C27	C26	119.7	119.9
C22	C27	H30	120.1	120.0
C24	C25	C26	119.7	120.2
C25	C24	H28	120.5	119.9
C24	C25	H29	120.2	119.8
C13	C12	C17	120.2	119.8
C12	C13	C14	120.6	119.9
C12	C13	H8	119.7	120.1
C12	C17	C16	119.2	119.9
C12	C17	H26	120.4	120.0
C27	C26	F28	119.6	120.0
C13	C14	F18	123.8	120.0
C13	C14	C15	119.2	120.1
C14	C13	H8	119.7	120.0
C17	C16	H25	119.1	119.9
C25	C26	F28	119.0	119.9
C26	C25	H29	120.2	120.0
C15	C14	F18	117.0	119.9
C14	C15	H24	120.4	119.9
C16	C15	H24	120.5	119.9
H6	C6	H7	109.5	109.4
H11	C61	H12	109.4	109.5

Torsion Angles for TD2

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O61	C61	C51	C41	212.9	185.0
O61	C61	C51	H10	332.1	305.0
H11	C61	O61	H12	239.5	120.0
C61	C51	C41	O41	307.7	302.3
C61	C51	C41	C31	190.4	182.4
C41	C51	C61	H10	240.8	240.0
C61	C51	C41	H15	69.4	62.4
C51	O51	C11	C21	307.5	298.9
C51	O51	C11	H9	68.6	58.9
C61	C51	C41	H10	119.4	120.0
O41	C41	C51	C31	117.3	119.9
O41	C41	C51	H15	238.4	239.9
C51	C41	O41	H17	180.0	60.0
C51	C41	C31	C21	40.5	56.9
C51	C41	C31	N7	186.1	176.9
C31	C41	C51	H15	121.1	120.0
C51	C41	C31	H18	292.4	297.0
S1	C11	O51	C21	234.1	240.0
S1	C11	O51	H9	113.1	120.0
O51	C11	C21	C31	40.4	57.6
O51	C11	C21	O2	155.7	177.5
C21	C11	O51	H9	239.0	240.0
O51	C11	C21	H19	275.5	297.7
O6	C6	C5	H5	286.9	305.0
C5	C6	O6	H6	239.4	120.0
C5	C6	O6	H7	120.6	240.0
H6	C6	O6	H7	241.2	119.9
O6	C6	C5	H6	120.6	240.0
O6	C6	C5	H7	239.4	120.1
O5	C5	C6	H5	119.2	120.1
C6	C5	C4	O4	305.7	302.3
C6	C5	C4	H4	67.2	62.5
H6	C6	C5	H7	118.9	240.0
C6	C5	O5	H5	240.8	240.0
O5	C5	C6	H6	285.5	185.0
O5	C5	C6	H7	166.7	305.0
O5	C5	C4	O4	67.5	62.3
O5	C5	C4	H4	189.0	182.5
C5	O5	C1	H1	66.4	58.8
C5	C4	C3	N71	175.5	176.8
C5	C4	C3	H3	290.3	297.0
O4	C4	C5	H4	238.4	239.8
C5	C4	O4	H16	180.0	60.4
C51	C41	O41	C31	240.1	240.4
O41	C41	C51	H10	188.4	182.3
C51	C41	O41	H15	121.1	120.2
O41	C41	C31	C21	280.7	297.1
O41	C41	C31	N7	66.3	57.0
C31	C41	O41	H15	241.0	239.8
O41	C41	C31	H18	172.7	177.2
C51	C41	C31	O41	119.8	119.9
C31	C41	C51	H10	71.1	62.4
C51	C41	C31	H15	239.2	240.0
O41	C41	C31	H15	119.4	120.1
C31	C41	O41	H17	299.9	179.6
C11	C21	C31	C41	323.1	303.0
C21	C31	C41	N7	214.4	240.1
C41	C31	C21	O2	209.7	183.1
C21	C31	C41	H18	108.0	119.9
C41	C31	C21	H19	88.0	63.0
C41	C31	N7	C8	263.7	275.0
N7	C31	C41	H18	253.6	239.8
C2	C1	O5	H1	241.6	240.0
O5	C1	C2	H2	289.6	297.7
S1	C1	O5	H1	115.0	120.0
C4	C3	C2	H2	69.7	63.0
C4	C3	N71	C71	278.9	275.4
N71	C3	C4	H3	245.2	239.8
C5	C4	O4	H4	120.6	120.3
O4	C4	C3	N71	55.1	57.0
O4	C4	C3	H3	169.9	177.2
O5	C1	C2	H1	118.9	120.0
C2	C1	S1	C11	188.1	175.0
S1	C1	C2	H1	243.2	240.0
C3	C2	C1	H2	117.5	119.9
O21	C2	C1	H2	242.2	239.9
O5	C1	S1	H1	242.8	240.0
C2	C1	S1	H1	118.2	120.0
S1	C1	C2	H2	53.9	57.7
C1	S1	C11	C21	136.5	175.0
C1	S1	C11	H9	16.6	54.9
C3	C2	C1	S1	171.4	177.6
C3	C2	C1	H1	288.2	297.6
C1	C2	C3	H2	242.7	240.1
O21	C2	C3	H2	117.6	120.1
C4	C3	N71	H3	114.9	120.3
N71	C3	C2	H2	303.6	303.1
N8	N71	C3	C71	182.5	180.0
C3	N71	C71	C10	181.1	180.0
C3	N71	C71	H23	1.1	360.0
C3	N71	N8	C71	178.0	180.0
N8	N71	C3	H3	346.4	335.2
N71	N8	N9	C10	358.8	360.0
N8	N71	C71	C10	358.9	360.0
N8	N71	C71	H23	178.9	180.0
N8	N9	C10	C22	180.9	180.0
O51	C11	S1	C21	124.7	120.0
O51	C11	S1	H9	244.7	240.0
C11	S1	C1	H1	69.8	55.0
S1	C11	C21	C31	160.9	177.6
S1	C11	C21	O2	276.2	297.5
C21	C11	S1	H9	120.0	120.1
S1	C11	C21	H19	36.0	57.6
O51	C11	C21	H9	121.2	120.0
C41	C31	C21	C11	323.1	303.0
S1	C11	C21	H9	241.7	239.9
C11	C21	C31	N7	178.3	183.1
C31	C21	C11	O2	244.6	240.1
C11	C21	C31	H18	71.2	62.9
C31	C21	C11	H19	124.9	119.9
O2	C21	C11	H19	240.2	239.8
C11	C21	O2	H20	180.0	60.0
O21	C2	C1	H1	52.9	57.6
C1	C2	O21	H2	116.9	120.1
C3	C2	O21	H2	243.2	239.8
C41	C31	C21	N7	144.8	119.9
C21	C31	C41	H15	161.3	176.9
C41	C31	C21	H18	251.9	240.1
C11	C21	C31	O2	113.5	119.9
C31	C21	C11	H9	279.2	297.6
C11	C21	C31	H19	235.1	240.1
C21	C31	N7	C8	50.3	34.6
N7	C31	C21	H18	107.1	120.2
O2	C21	C31	H19	121.7	120.2
C31	C21	O2	H20	299.9	179.7
C41	C31	N7	C21	213.4	240.4
N7	C31	C41	H15	306.9	296.8
C41	C31	N7	H18	106.4	120.2
N7	C31	C21	O2	64.9	63.2
C21	C31	N7	H18	253.0	239.8
N7	C31	C21	H19	303.2	303.1
C31	N7	C8	C9	181.4	180.0
C31	N7	C8	H22	1.3	359.9
C71	N71	C3	H3	164.0	155.2
N71	C71	C10	C22	179.9	180.0
N71	C71	C10	N9	0.5	360.0
C71	C10	N9	C22	179.5	180.0
N9	C10	C22	C27	194.8	0.0
C11	C21	O2	C31	240.1	240.3
O2	C21	C11	H9	34.6	57.5
C11	C21	O2	H19	119.1	120.1
O2	C21	C31	N7	64.9	63.2
O2	C21	C31	H18	317.8	303.0
C31	C21	O2	H19	239.0	239.8
N11	N7	C31	H18	339.6	334.5
N11	N7	C8	H22	179.3	180.2
C8	N7	C31	H18	157.3	154.8
C9	C8	N7	H22	180.0	180.0
N71	C71	C10	H23	180.0	180.0
N9	C10	C71	C22	180.6	180.0
C71	C10	C22	C27	15.4	180.0
N10	C9	C8	H22	180.9	180.0
N10	C9	C12	C17	205.9	180.3
C23	C22	C10	C27	181.8	180.3
C10	C22	C27	C26	179.6	179.8
C10	C22	C27	H30	359.7	0.1
N7	C8	C9	H22	180.0	180.0
C8	C9	C12	C17	29.1	0.3
C13	C12	C9	C17	182.6	179.7
C9	C12	C13	H8	359.2	0.2
C9	C12	C17	C16	181.3	179.7
C9	C12	C17	H26	1.3	359.8
C10	C22	C23	C27	178.3	179.7
C23	C22	C27	C26	357.9	359.5
C23	C22	C27	H30	177.9	179.8
C24	C23	C22	C27	1.8	0.3
C23	C24	C25	C26	359.9	0.0
C25	C24	C23	H28	180.0	180.0
C23	C24	C25	H29	179.9	180.0
C22	C27	C26	F28	182.5	180.3
C25	C24	C23	H27	179.3	180.0
C23	C24	C25	H28	180.0	180.0
C24	C25	C26	F28	178.7	179.9
C26	C25	C24	H29	180.0	180.1
C9	C12	C13	C17	177.3	180.3
C13	C12	C17	C16	358.6	360.0
C13	C12	C17	H26	178.6	180.0
C12	C13	C14	F18	180.1	180.0
C12	C13	C14	C15	358.5	360.0
C14	C13	C12	H8	180.0	180.1
C17	C12	C13	C14	1.8	0.0
C17	C12	C13	H8	181.8	179.9
C12	C17	C16	H25	180.8	180.0
C22	C27	C26	H30	180.0	180.3
C25	C26	C27	F28	179.0	180.2
C27	C26	C25	H29	179.8	179.8
C14	C13	C12	C17	1.8	0.0
C12	C13	C14	H8	180.0	179.9
C15	C14	C13	F18	178.4	180.0
C13	C14	C15	H24	180.9	180.0
C12	C17	C16	H26	180.0	180.1
C17	C16	C15	H24	179.5	179.9
C22	C27	C26	C25	1.4	0.5
C26	C25	C24	H28	179.9	180.0
C24	C25	C26	H29	180.0	179.9
C27	C26	C25	F28	181.0	179.8
F28	C26	C25	H29	358.7	0.0
C13	C14	F18	C15	178.5	180.0
F18	C14	C13	H8	0.0	0.0
F18	C14	C15	H24	359.4	0.1
C13	C14	C15	F18	181.4	180.0
C15	C14	C13	H8	178.5	180.1
C16	C15	C14	H24	180.0	180.0
C12	C17	C16	C15	0.7	0.0
C16	C15	C14	F18	179.4	180.0
C14	C15	C16	H24	180.0	180.0
C2	C1	H1	S1	237.8	240.0
H1	C1	C2	H2	170.7	177.7
H1	C1	S1	C11	69.8	55.0
H2	C2	C1	S1	53.9	57.7
H2	C2	C1	H1	170.7	177.7
C4	C3	H3	N71	243.3	239.8
H3	C3	C2	H2	187.8	182.9
H3	C3	N71	C71	164.0	155.2
C5	C4	H4	O4	238.4	239.8
H4	C4	C3	N71	295.9	296.8
H4	C4	C3	H3	50.7	57.0
H4	C4	O4	H16	59.4	300.1
C6	C5	H5	O5	119.9	120.1
H5	C5	C6	H6	166.3	65.0
H5	C5	C6	H7	47.4	184.9
H5	C5	C4	O4	187.8	182.3
H5	C5	C4	H4	309.3	302.5
O6	C6	H6	H7	118.2	240.0
H6	C6	C5	O5	285.5	185.0
H6	C6	C5	H5	166.3	65.0
C5	C6	H6	H7	241.8	120.0
O6	C6	H7	H6	241.8	120.0
H7	C6	C5	O5	166.7	305.0
H7	C6	C5	H5	47.4	184.9
C5	C6	H7	H6	118.2	240.0
H8	C13	C12	C17	181.8	179.9
C12	C13	H8	C14	180.0	180.1
H8	C13	C14	F18	0.0	0.0
H8	C13	C14	C15	178.5	180.1
O51	C11	H9	C21	236.4	240.0
S1	C11	H9	C21	123.8	120.1
H9	C11	C21	C31	279.2	297.6
H9	C11	C21	O2	34.6	57.5
H9	C11	C21	H19	154.3	177.7
C61	C51	H10	C41	238.3	240.0
H10	C51	C41	O41	188.4	182.3
H10	C51	C41	C31	71.1	62.4
H10	C51	C41	H15	310.0	302.4
O61	C61	H11	H12	120.9	240.0
H11	C61	C51	C41	93.1	305.0
H11	C61	C51	H10	212.4	64.9
O61	C61	H12	H11	239.1	120.0
H12	C61	C51	C41	332.6	65.0
H12	C61	C51	H10	91.9	185.0
H13	O6	C6	H6	300.6	60.0
H13	O6	C6	H7	59.5	300.1
H14	O61	C61	H11	299.7	60.0
H14	O61	C61	H12	60.3	300.0
C51	C41	H15	O41	238.4	239.8
C51	C41	H15	C31	121.5	119.7
H15	C41	C51	H10	310.0	302.4
O41	C41	H15	C31	243.1	239.9
H15	C41	O41	H17	58.9	299.8
H15	C41	C31	C21	161.3	176.9
H15	C41	C31	N7	306.9	296.8
H15	C41	C31	H18	53.3	57.0
H16	O4	C4	H4	59.4	300.1
H17	O41	C41	C31	299.9	179.6
H17	O41	C41	H15	58.9	299.8
C41	C31	H18	C21	122.8	119.6
C41	C31	H18	N7	242.7	239.8
H18	C31	C41	H15	53.3	57.0
C21	C31	H18	N7	119.9	120.2
H18	C31	C21	O2	317.8	303.0
H18	C31	C21	H19	196.1	182.8
H18	C31	N7	C8	157.3	154.8
C11	C21	H19	C31	126.4	119.7
C11	C21	H19	O2	245.2	239.9
H19	C21	C11	H9	154.3	177.7
H19	C21	C31	N7	303.2	303.1
C31	C21	H19	O2	118.8	120.1
H19	C21	C31	H18	196.1	182.8
H19	C21	O2	H20	60.9	299.9
H20	O2	C21	H19	60.9	299.9
H21	O21	C2	H2	63.1	300.0
N7	C8	H22	C9	180.1	180.0
N71	C71	H23	C10	180.0	180.0
H23	C71	C10	C22	359.9	0.0
H24	C15	C14	F18	359.4	0.1
H25	C16	C15	H24	359.5	0.0
C12	C17	H26	C16	180.0	179.9
H26	C17	C16	H25	0.8	359.9
H27	C23	C22	C27	181.8	180.2
H27	C23	C24	C25	179.3	180.0
H27	C23	C24	H28	359.3	0.0
C23	C24	H28	C25	180.0	180.0
H28	C24	C23	H27	359.3	0.0
H28	C24	C25	C26	179.9	180.0
H28	C24	C25	H29	359.9	359.9
C24	C25	H29	C26	180.0	180.1
H29	C25	C24	H28	359.9	359.9
H29	C25	C26	F28	358.7	0.0
C22	C27	H30	C26	180.0	179.7
H30	C27	C26	F28	2.4	0.0