PDB Chemical Component TCP

Ideal Model

Chemical Description

Name 5'-METHYLTHYMIDINE
Formula C11 H16 N2 O5
Formal charge 0
Molecular weight 256.255 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 34
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms HO3'
Bond count 35
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-methylthymidine
Systematic name (OpenEye OEToolkits) 1-[(2R,4S,5R)-4-hydroxy-5-(methoxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) COC[C@H]1O[C@H](C[C@@H]1O)N2C=C(C)C(=O)NC2=O
SMILES (CACTVS) COC[CH]1O[CH](C[CH]1O)N2C=C(C)C(=O)NC2=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COC)O
InChI descriptor InChI=1S/C11H16N2O5/c1-6-4-13(11(16)12-10(6)15)9-3-7(14)8(18-9)5-17-2/h4,7-9,14H,3,5H2,1-2H3,(H,12,15,16)/t7-,8+,9+/m0/s1
InChIKey descriptor KTCKNHCDUKONFQ-DJLDLDEBSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1AC3
Processing site RCSB