PDB Chemical Component TCP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TCP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CP O5' 1.410 1.429
CP HP1 1.090 1.089
CP HP2 1.091 1.090
CP HP3 1.114 1.090
O5' C5' 1.410 1.428
C5' C4' 1.526 1.529
C5' H5' 1.090 1.090
C5' H5'' 1.089 1.090
C4' O4' 1.410 1.442
C4' C3' 1.526 1.549
C4' H4' 1.089 1.090
O4' C1' 1.410 1.437
C3' O3' 1.410 1.429
C3' C2' 1.526 1.550
C3' H3' 1.090 1.091
O3' HO3' 0.950 0.967
C2' C1' 1.525 1.541
C2' H2' 1.090 1.091
C2' H2'' 1.091 1.090
C1' N1 1.475 1.464
C1' H1' 1.090 1.090
N1 C2 1.383 1.344
N1 C6 1.365 1.368
C2 O2 1.228 1.216
C2 N3 1.388 1.346
N3 C4 1.388 1.348
N3 HN3 1.010 0.970
C4 O4 1.229 1.217
C4 C5 1.444 1.415
C5 C5M 1.510 1.508
C5 C6 1.350 1.350
C5M H71 1.090 1.090
C5M H72 1.090 1.089
C5M H73 1.090 1.090
C6 H6 1.081 1.080

Bond Angles for TCP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O5' CP HP1 109.8 109.5
O5' CP HP2 108.6 109.5
O5' CP HP3 110.0 109.4
CP O5' C5' 115.7 106.8
HP1 CP HP2 108.0 109.5
HP1 CP HP3 3.3 109.5
HP2 CP HP3 105.0 109.4
O5' C5' C4' 111.4 109.5
O5' C5' H5' 109.8 109.5
O5' C5' H5'' 110.9 109.4
C4' C5' H5' 110.6 109.4
C4' C5' H5'' 106.0 109.5
C5' C4' O4' 109.3 110.7
C5' C4' C3' 112.6 110.7
C5' C4' H4' 110.1 110.5
H5' C5' H5'' 108.1 109.5
O4' C4' C3' 106.7 103.6
O4' C4' H4' 108.0 110.6
C4' O4' C1' 107.8 107.0
C3' C4' H4' 109.9 110.6
C4' C3' O3' 109.7 111.2
C4' C3' C2' 102.6 102.1
C4' C3' H3' 109.7 110.7
O4' C1' C2' 104.9 107.3
O4' C1' N1 110.8 109.9
O4' C1' H1' 106.3 109.8
O3' C3' C2' 114.9 110.9
O3' C3' H3' 110.5 110.8
C3' O3' HO3' 109.6 106.9
C2' C3' H3' 109.1 110.9
C3' C2' C1' 106.0 104.2
C3' C2' H2' 108.9 110.3
C3' C2' H2'' 113.4 110.7
C1' C2' H2' 112.0 110.5
C1' C2' H2'' 107.6 110.5
C2' C1' N1 112.5 110.0
C2' C1' H1' 109.3 109.9
H2' C2' H2'' 109.1 110.5
N1 C1' H1' 112.5 109.9
C1' N1 C2 119.4 119.7
C1' N1 C6 119.8 119.7
C2 N1 C6 120.8 120.6
N1 C2 O2 123.3 119.5
N1 C2 N3 116.5 120.9
N1 C6 C5 122.3 119.7
N1 C6 H6 118.6 120.2
O2 C2 N3 120.1 119.5
C2 N3 C4 125.2 120.3
C2 N3 HN3 117.5 119.8
C4 N3 HN3 117.3 119.9
N3 C4 O4 120.6 120.4
N3 C4 C5 114.6 119.4
O4 C4 C5 124.9 120.3
C4 C5 C5M 119.3 120.4
C4 C5 C6 120.3 119.1
C5M C5 C6 120.3 120.4
C5 C5M H71 111.7 109.4
C5 C5M H72 108.9 109.5
C5 C5M H73 110.5 109.5
C5 C6 H6 119.1 120.1
H71 C5M H72 108.6 109.5
H71 C5M H73 108.3 109.5
H72 C5M H73 108.7 109.5

Torsion Angles for TCP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HP1 CP O5' HP2 242.1 239.9
HP1 CP O5' HP3 356.5 120.1
HP2 CP O5' HP3 114.3 240.1
CP O5' C5' C4' 158.6 180.1
CP O5' C5' H5' 281.4 300.1
CP O5' C5' H5'' 40.8 60.1
O5' CP HP1 HP2 118.3 120.1
O5' CP HP1 HP3 94.1 240.0
HP1 CP O5' C5' 51.2 59.9
HP2 CP HP1 HP3 335.8 120.0
O5' CP HP2 HP1 241.0 239.9
O5' CP HP2 HP3 242.4 119.9
HP2 CP O5' C5' 169.1 180.0
HP1 CP HP2 HP3 1.4 239.9
O5' CP HP3 HP1 272.9 120.0
O5' CP HP3 HP2 116.7 240.1
HP3 CP O5' C5' 54.7 299.9
HP1 CP HP3 HP2 203.8 120.0
C5' O5' CP HP1 51.2 59.9
C5' O5' CP HP2 169.1 180.0
C5' O5' CP HP3 54.7 299.9
C4' C5' O5' H5' 237.1 240.0
C4' C5' O5' H5'' 117.7 120.0
O5' C5' C4' O4' 316.8 63.6
O5' C5' C4' C3' 75.2 177.9
O5' C5' C4' H4' 198.3 300.7
H5' C5' O5' H5'' 240.6 240.0
O5' C5' C4' H5' 122.4 120.0
O5' C5' C4' H5'' 239.3 240.0
H5' C5' C4' H5'' 116.9 120.0
O4' C4' C5' C3' 241.6 245.7
O4' C4' C5' H4' 118.5 122.9
C5' C4' O4' C1' 157.3 158.6
C3' C4' C5' H4' 236.9 237.2
C5' C4' C3' O3' 96.3 86.3
C5' C4' C3' C2' 218.8 204.6
C5' C4' C3' H3' 334.7 322.6
O5' C5' H5' C4' 236.7 240.0
O5' C5' H5' H5'' 121.1 120.0
C4' C5' H5' H5'' 244.4 240.0
H5' C5' C4' O4' 194.4 303.6
H5' C5' C4' C3' 312.8 57.9
H5' C5' C4' H4' 75.9 180.6
O5' C5' H5'' C4' 121.0 120.0
O5' C5' H5'' H5' 239.6 240.0
C4' C5' H5'' H5' 118.6 120.0
H5'' C5' C4' O4' 77.5 183.6
H5'' C5' C4' C3' 195.9 297.9
H5'' C5' C4' H4' 319.0 60.6
O4' C4' C5' H5' 194.4 303.6
O4' C4' C5' H5'' 77.5 183.6
C5' C4' O4' C3' 122.0 118.6
C5' C4' O4' H4' 240.2 237.2
C3' C4' O4' H4' 118.2 118.5
O4' C4' C3' O3' 216.2 204.9
O4' C4' C3' C2' 338.7 323.3
O4' C4' C3' H3' 94.6 81.3
C4' O4' C1' C2' 326.3 333.5
C4' O4' C1' N1 204.6 213.9
C4' O4' C1' H1' 82.1 92.9
C3' C4' C5' H5' 312.8 57.9
C3' C4' C5' H5'' 195.9 297.9
C5' C4' C3' O4' 240.1 241.3
C5' C4' C3' H4' 123.2 122.8
O4' C4' C3' H4' 243.1 241.4
C3' C4' O4' C1' 35.3 39.9
O3' C3' C4' C2' 237.5 241.7
O3' C3' C4' H3' 121.6 123.6
C4' C3' O3' HO3' 179.9 174.3
C2' C3' C4' H3' 244.1 242.0
C4' C3' C2' C1' 1.3 20.6
C4' C3' C2' H2' 121.9 262.0
C4' C3' C2' H2'' 243.5 139.4
H4' C4' C5' H5' 75.9 180.6
H4' C4' C5' H5'' 319.0 60.6
C5' C4' H4' O4' 119.3 122.9
C5' C4' H4' C3' 235.4 237.1
O4' C4' H4' C3' 116.1 114.2
H4' C4' O4' C1' 277.1 281.4
H4' C4' C3' O3' 333.1 323.5
H4' C4' C3' C2' 95.6 81.8
H4' C4' C3' H3' 211.5 199.9
C1' O4' C4' C3' 35.3 39.9
C1' O4' C4' H4' 277.1 281.4
C3' C2' C1' O4' 19.0 2.2
O4' C1' C2' H2' 260.4 120.7
O4' C1' C2' H2'' 140.6 243.3
C2' C1' O4' N1 121.7 119.6
C2' C1' O4' H1' 244.2 240.6
N1 C1' O4' H1' 122.6 121.0
O4' C1' N1 C2 222.0 58.3
O4' C1' N1 C6 44.5 238.5
O3' C3' C4' H4' 333.1 323.5
C4' C3' O3' C2' 114.9 112.9
C4' C3' O3' H3' 238.9 236.4
C2' C3' O3' H3' 124.0 123.5
O3' C3' C2' C1' 120.2 139.2
O3' C3' C2' H2' 240.8 20.6
O3' C3' C2' H2'' 2.4 257.9
C2' C3' C4' H4' 95.6 81.8
C4' C3' C2' O3' 241.1 241.4
C4' C3' C2' H3' 116.3 117.9
O4' C1' C2' C3' 19.0 2.2
O3' C3' C2' H3' 235.2 236.5
C2' C3' O3' HO3' 65.1 61.4
C1' C2' C3' H2' 239.4 118.6
C1' C2' C3' H2'' 117.8 241.2
C3' C2' C1' N1 139.5 121.7
C3' C2' C1' H1' 265.3 242.8
H2' C2' C3' H2'' 238.4 122.6
H3' C3' C4' H4' 211.5 199.9
C4' C3' H3' O3' 121.0 123.9
C4' C3' H3' C2' 248.3 247.5
O3' C3' H3' C2' 127.3 123.6
H3' C3' O3' HO3' 301.0 297.9
H3' C3' C2' C1' 245.0 262.7
H3' C3' C2' H2' 5.6 144.0
H3' C3' C2' H2'' 127.2 21.4
HO3' O3' C3' C2' 65.1 61.4
HO3' O3' C3' H3' 301.0 297.9
O4' C1' C2' N1 239.4 240.5
O4' C1' C2' H1' 113.7 119.4
C1' C2' C3' H3' 245.0 262.7
C3' C2' C1' H2' 118.6 241.5
C3' C2' C1' H2'' 238.4 118.9
H2' C2' C1' H2'' 119.8 237.4
N1 C1' C2' H1' 234.2 238.9
C2' C1' N1 C2 104.9 300.5
C2' C1' N1 C6 287.4 120.6
H2' C2' C3' H3' 5.6 144.0
C3' C2' H2' C1' 243.1 114.7
C3' C2' H2' H2'' 124.2 237.3
C1' C2' H2' H2'' 241.1 122.6
H2' C2' C1' N1 20.9 240.2
H2' C2' C1' H1' 146.7 1.3
H2'' C2' C3' H3' 127.2 21.4
C3' C2' H2'' C1' 116.8 245.1
C3' C2' H2'' H2' 238.5 122.5
C1' C2' H2'' H2' 121.6 237.4
H2'' C2' C1' N1 261.1 2.8
H2'' C2' C1' H1' 26.9 123.9
O4' C1' N1 C2' 117.1 117.9
O4' C1' N1 H1' 241.1 239.0
N1 C1' C2' H2' 20.9 240.2
N1 C1' C2' H2'' 261.1 2.8
C2' C1' N1 H1' 124.0 121.2
C2 N1 C1' C6 177.5 179.8
C1' N1 C2 O2 356.0 0.2
C1' N1 C2 N3 176.6 179.7
C1' N1 C6 C5 182.8 180.1
C1' N1 C6 H6 2.7 360.0
O4' C1' H1' C2' 247.2 242.2
O4' C1' H1' N1 121.5 121.0
H1' C1' C2' H2' 146.7 1.3
H1' C1' C2' H2'' 26.9 123.9
C2' C1' H1' N1 234.3 238.8
H1' C1' N1 C2 340.9 179.3
H1' C1' N1 C6 163.3 359.5
C2 N1 C1' H1' 340.9 179.3
C1' N1 C2 C6 182.5 180.2
C2 N1 C6 C5 5.2 0.3
C2 N1 C6 H6 185.2 180.1
O2 C2 N1 N3 179.4 180.4
N1 C2 N3 C4 1.6 0.4
N1 C2 N3 HN3 179.2 180.2
C6 N1 C1' H1' 163.3 359.5
C1' N1 C6 C2 177.5 179.8
C6 N1 C2 O2 173.5 180.0
C6 N1 C2 N3 354.1 359.6
C4 C5 C6 N1 359.9 359.9
C5M C5 C6 N1 183.6 180.0
C5 C6 N1 H6 180.0 180.1
O2 C2 N1 C6 173.5 180.0
N1 C2 O2 N3 180.6 179.6
O2 C2 N3 C4 182.2 180.0
O2 C2 N3 HN3 359.8 359.8
N3 C2 N1 C6 354.1 359.6
N1 C2 N3 O2 179.4 180.4
C4 N3 C2 HN3 182.4 180.2
C2 N3 C4 O4 182.6 179.8
C2 N3 C4 C5 3.1 359.7
C2 N3 C4 HN3 177.6 179.8
O4 C4 N3 C5 179.5 180.1
N3 C4 C5 C5M 172.5 180.0
N3 C4 C5 C6 356.2 0.1
C2 N3 HN3 C4 182.2 180.2
HN3 N3 C4 O4 5.0 360.0
HN3 N3 C4 C5 185.5 179.9
O4 C4 N3 HN3 5.0 360.0
N3 C4 O4 C5 180.5 179.9
O4 C4 C5 C5M 353.1 359.9
O4 C4 C5 C6 176.7 180.1
N1 C6 C5 C4 359.9 359.9
C5 C4 N3 HN3 185.5 179.9
N3 C4 C5 O4 179.5 180.1
C5M C5 C4 C6 176.4 179.8
C4 C5 C5M H71 164.2 0.1
C4 C5 C5M H72 284.2 120.1
C4 C5 C5M H73 43.6 240.1
C4 C5 C6 H6 179.9 180.0
N1 C6 C5 C5M 183.6 180.0
C4 C5 C5M C6 183.6 180.2
C5M C5 C6 H6 3.6 0.2
H71 C5M C5 H72 240.0 240.0
H71 C5M C5 H73 120.7 120.0
H72 C5M C5 H73 240.7 240.0
N1 C6 C5 H6 180.0 179.9
C4 C5 C6 C5M 176.3 179.8
C6 C5 C5M H71 340.6 179.9
C6 C5 C5M H72 100.6 299.9
C6 C5 C5M H73 219.9 59.9
H71 C5M C5 C6 340.6 179.9
C5 C5M H71 H72 120.2 120.0
C5 C5M H71 H73 238.1 240.0
H72 C5M H71 H73 117.9 120.0
H72 C5M C5 C6 100.6 299.9
C5 C5M H72 H71 238.1 240.1
C5 C5M H72 H73 120.5 120.0
H71 C5M H72 H73 242.3 239.9
H73 C5M C5 C6 219.9 59.9
C5 C5M H73 H71 122.7 120.0
C5 C5M H73 H72 240.5 240.0
H71 C5M H73 H72 117.8 120.1
N1 C6 H6 C5 180.0 180.1