PDB Chemical Component TCO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TCO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.506 1.464
N C1 1.383 1.347
N HN 1.031 0.971
CA C 1.567 1.507
CA CB 1.590 1.530
CA HA 1.110 1.090
C O 1.245 1.207
C HC 1.104 1.080
CG2 CD2 1.545 1.530
CG2 CB 1.533 1.529
CG2 HG21 1.115 1.090
CG2 HG22 1.114 1.090
CD2 CE 1.544 1.529
CD2 HD21 1.114 1.089
CD2 HD22 1.114 1.090
CE CD1 1.533 1.529
CE HE1 1.116 1.090
CE HE2 1.116 1.090
CD1 CG1 1.553 1.530
CD1 HD11 1.115 1.090
CD1 HD12 1.115 1.090
CG1 CB 1.568 1.529
CG1 HG11 1.115 1.089
CG1 HG12 1.115 1.090
CB HB 1.113 1.090
C1 O1 1.242 1.215
C1 O2 1.405 1.346
O2 C3 1.465 1.452
C4 C3 1.558 1.530
C4 H41 1.115 1.090
C4 H42 1.115 1.091
C4 H43 1.116 1.091
C3 C6 1.543 1.529
C3 C5 1.547 1.529
C6 H61 1.115 1.090
C6 H62 1.114 1.090
C6 H63 1.115 1.089
C5 H51 1.115 1.090
C5 H52 1.116 1.090
C5 H53 1.114 1.090

Bond Angles for TCO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N C1 127.3 120.1
CA N HN 119.0 119.9
N CA C 109.6 109.5
N CA CB 107.7 109.5
N CA HA 108.7 109.4
C1 N HN 109.9 120.0
N C1 O1 125.1 119.9
N C1 O2 112.6 120.1
C CA CB 110.4 109.5
C CA HA 108.6 109.5
CA C O 127.2 120.0
CA C HC 117.0 120.0
CB CA HA 111.9 109.4
CA CB CG2 113.3 109.5
CA CB CG1 118.0 109.5
CA CB HB 107.2 109.4
O C HC 115.7 120.1
CD2 CG2 CB 117.4 109.5
CD2 CG2 HG21 109.3 109.5
CD2 CG2 HG22 109.3 109.5
CG2 CD2 CE 111.9 109.5
CG2 CD2 HD21 111.3 109.5
CG2 CD2 HD22 111.3 109.5
CB CG2 HG21 109.3 109.5
CB CG2 HG22 109.3 109.5
CG2 CB CG1 113.6 109.5
CG2 CB HB 101.1 109.5
HG21 CG2 HG22 100.8 109.4
CE CD2 HD21 111.3 109.5
CE CD2 HD22 111.3 109.4
CD2 CE CD1 111.1 109.5
CD2 CE HE1 111.7 109.5
CD2 CE HE2 111.6 109.4
HD21 CD2 HD22 99.1 109.4
CD1 CE HE1 111.6 109.5
CD1 CE HE2 111.6 109.4
CE CD1 CG1 114.9 109.5
CE CD1 HD11 110.2 109.4
CE CD1 HD12 110.2 109.5
HE1 CE HE2 98.7 109.5
CG1 CD1 HD11 110.2 109.4
CG1 CD1 HD12 110.2 109.5
CD1 CG1 CB 116.7 109.5
CD1 CG1 HG11 109.5 109.5
CD1 CG1 HG12 109.6 109.5
HD11 CD1 HD12 100.0 109.5
CB CG1 HG11 109.6 109.5
CB CG1 HG12 109.6 109.5
CG1 CB HB 101.0 109.4
HG11 CG1 HG12 100.6 109.4
O1 C1 O2 122.3 120.0
C1 O2 C3 128.0 120.0
O2 C3 C4 104.9 109.5
O2 C3 C6 110.6 109.5
O2 C3 C5 110.3 109.5
C3 C4 H41 104.9 109.5
C3 C4 H42 113.9 109.5
C3 C4 H43 114.0 109.5
C4 C3 C6 105.8 109.5
C4 C3 C5 109.9 109.4
H41 C4 H42 113.9 109.4
H41 C4 H43 113.9 109.5
H42 C4 H43 96.5 109.5
C6 C3 C5 114.9 109.5
C3 C6 H61 110.5 109.5
C3 C6 H62 111.8 109.5
C3 C6 H63 111.8 109.5
C3 C5 H51 110.3 109.5
C3 C5 H52 111.9 109.4
C3 C5 H53 111.9 109.5
H61 C6 H62 111.9 109.4
H61 C6 H63 111.8 109.4
H62 C6 H63 98.6 109.5
H51 C5 H52 111.9 109.4
H51 C5 H53 112.0 109.5
H52 C5 H53 98.5 109.5

Torsion Angles for TCO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1 N CA HN 155.6 180.2
CA N C1 O1 15.8 359.8
CA N C1 O2 196.3 179.9
C CA N CB 120.1 120.1
C CA N HA 241.5 240.0
N CA C O 120.1 360.0
N CA C HC 301.7 180.0
CB CA N HA 121.4 119.9
N CA CB CG2 226.4 180.0
N CA CB CG1 90.1 300.1
N CA CB HB 337.1 60.0
CA N C1 HN 202.6 179.8
C1 N CA C 220.1 270.1
C1 N CA CB 100.0 150.0
C1 N CA HA 338.7 30.1
O1 C1 N O2 179.4 179.9
N C1 O2 C3 195.6 179.9
CA N HN C1 159.6 180.2
HN N CA C 64.5 89.9
HN N CA CB 304.4 329.9
HN N CA HA 183.0 209.9
HN N C1 O1 173.2 180.0
HN N C1 O2 353.8 0.1
C CA N C1 220.1 270.1
C CA N HN 64.5 89.9
N CA C CB 241.6 239.9
N CA C HA 118.6 119.9
CB CA C HA 237.0 240.0
C CA CB CG2 106.9 60.0
C CA CB CG1 330.5 180.0
C CA CB HB 217.5 299.9
O C CA HC 178.4 180.0
CB CA N C1 100.0 150.0
CB CA N HN 304.4 329.9
N CA CB C 119.6 120.1
N CA CB HA 240.7 240.1
C CA CB HA 121.1 120.0
CB CA C O 238.5 120.1
CB CA C HC 60.1 300.0
CD2 CG2 CB CA 201.4 180.0
CA CB CG2 HG21 76.2 300.0
CA CB CG2 HG22 326.7 60.0
CG2 CB CA CG1 136.3 240.0
CG2 CB CA HB 249.4 120.0
CD1 CG1 CB CA 176.6 180.0
CA CB CG1 HG11 51.3 300.0
CA CB CG1 HG12 301.8 59.9
CG1 CB CA HB 113.0 240.1
HA CA N C1 338.7 30.1
HA CA N HN 183.0 209.9
N CA HA C 240.9 240.0
N CA HA CB 118.8 120.0
C CA HA CB 237.9 240.0
HA CA C O 1.5 240.0
HA CA C HC 183.1 60.0
HA CA CB CG2 345.8 299.9
HA CA CB CG1 209.5 60.0
HA CA CB HB 96.4 179.9
O C CA CB 238.5 120.1
O C CA HA 1.5 240.0
CA C O HC 181.6 180.0
HC C CA CB 60.1 300.0
HC C CA HA 183.1 60.0
CA C HC O 178.6 180.0
CA CB CG2 CD2 201.4 180.0
CB CG2 CD2 HG21 234.8 120.0
CB CG2 CD2 HG22 125.2 240.0
CD2 CG2 CB CG1 339.7 60.0
CD2 CG2 CB HB 87.1 300.0
HG21 CG2 CD2 HG22 250.5 119.9
CE CD2 CG2 HD21 234.8 240.0
CE CD2 CG2 HD22 125.2 120.0
CG2 CD2 CE CD1 60.8 59.9
CG2 CD2 CE HE1 186.1 180.0
CG2 CD2 CE HE2 295.5 300.0
HD21 CD2 CG2 HD22 250.5 240.0
CG2 CB CA HA 345.8 299.9
CA CB CG2 CG1 221.7 120.0
CA CB CG2 HB 114.4 240.0
CD2 CG2 CB HG21 125.2 240.0
CD2 CG2 CB HG22 234.8 120.0
CB CG2 CD2 CE 331.0 300.0
CB CG2 CD2 HD21 96.2 60.0
CB CG2 CD2 HD22 205.8 180.0
HG21 CG2 CB HG22 109.5 240.0
CD1 CG1 CB CG2 40.4 300.0
CG2 CB CG1 HG11 275.1 60.0
CG2 CB CG1 HG12 165.7 180.0
CG1 CB CG2 HB 252.7 120.0
CD2 CG2 HG21 CB 230.2 120.0
CD2 CG2 HG21 HG22 115.1 240.0
HG21 CG2 CD2 CE 96.2 180.0
HG21 CG2 CD2 HD21 221.5 300.0
HG21 CG2 CD2 HD22 331.0 60.0
CB CG2 HG21 HG22 244.9 120.0
HG21 CG2 CB CG1 214.5 180.0
HG21 CG2 CB HB 321.8 60.0
CD2 CG2 HG22 CB 129.8 240.0
CD2 CG2 HG22 HG21 244.9 120.0
HG22 CG2 CD2 CE 205.7 60.0
HG22 CG2 CD2 HD21 331.0 180.0
HG22 CG2 CD2 HD22 80.5 300.0
CB CG2 HG22 HG21 115.1 240.0
HG22 CG2 CB CG1 105.0 300.0
HG22 CG2 CB HB 212.3 180.0
CE CD2 CG2 CB 331.0 300.0
CE CD2 CG2 HG21 96.2 180.0
CE CD2 CG2 HG22 205.7 60.0
CG2 CD2 CE HD21 125.3 120.0
CG2 CD2 CE HD22 234.7 240.0
HD21 CD2 CE HD22 109.5 119.9
CD1 CE CD2 HE1 234.7 239.9
CD1 CE CD2 HE2 125.3 119.9
CD2 CE CD1 CG1 319.2 300.0
CD2 CE CD1 HD11 84.5 60.0
CD2 CE CD1 HD12 193.9 180.0
HE1 CE CD2 HE2 250.6 240.0
HD21 CD2 CG2 CB 96.2 60.0
HD21 CD2 CG2 HG21 221.5 300.0
HD21 CD2 CG2 HG22 331.0 180.0
CG2 CD2 HD21 CE 234.4 240.0
CG2 CD2 HD21 HD22 117.2 120.0
CE CD2 HD21 HD22 242.8 240.1
HD21 CD2 CE CD1 295.5 299.9
HD21 CD2 CE HE1 60.8 60.0
HD21 CD2 CE HE2 170.2 180.0
HD22 CD2 CG2 CB 205.8 180.0
HD22 CD2 CG2 HG21 331.0 60.0
HD22 CD2 CG2 HG22 80.5 300.0
CG2 CD2 HD22 CE 125.6 120.0
CG2 CD2 HD22 HD21 242.8 240.0
CE CD2 HD22 HD21 117.2 119.9
HD22 CD2 CE CD1 186.0 180.0
HD22 CD2 CE HE1 311.3 300.1
HD22 CD2 CE HE2 60.7 60.1
CD1 CE CD2 HD21 295.5 299.9
CD1 CE CD2 HD22 186.0 180.0
CD2 CE CD1 HE1 125.3 120.1
CD2 CE CD1 HE2 234.7 240.1
HE1 CE CD1 HE2 109.4 120.0
CG1 CD1 CE HD11 234.7 240.0
CG1 CD1 CE HD12 125.3 120.0
CE CD1 CG1 CB 350.8 60.0
CE CD1 CG1 HG11 116.1 300.0
CE CD1 CG1 HG12 225.5 180.0
HD11 CD1 CE HD12 250.6 240.0
HE1 CE CD2 HD21 60.8 60.0
HE1 CE CD2 HD22 311.3 300.1
CD2 CE HE1 CD1 235.0 240.0
CD2 CE HE1 HE2 117.5 120.0
CD1 CE HE1 HE2 242.5 240.0
HE1 CE CD1 CG1 193.9 180.0
HE1 CE CD1 HD11 319.2 299.9
HE1 CE CD1 HD12 68.6 59.9
HE2 CE CD2 HD21 170.2 180.0
HE2 CE CD2 HD22 60.7 60.1
CD2 CE HE2 CD1 125.0 119.9
CD2 CE HE2 HE1 242.5 240.0
CD1 CE HE2 HE1 117.5 120.0
HE2 CE CD1 CG1 84.5 60.0
HE2 CE CD1 HD11 209.8 179.9
HE2 CE CD1 HD12 319.2 299.9
CA CB CG1 CD1 176.6 180.0
CG2 CB CG1 CD1 40.4 300.0
CG1 CD1 CE HE1 193.9 180.0
CG1 CD1 CE HE2 84.5 60.0
CE CD1 CG1 HD11 125.3 120.0
CE CD1 CG1 HD12 234.7 240.0
HD11 CD1 CG1 HD12 109.4 120.0
CB CG1 CD1 HG11 234.7 120.0
CB CG1 CD1 HG12 125.3 240.0
CD1 CG1 CB HB 293.0 60.0
HG11 CG1 CD1 HG12 250.6 120.0
HD11 CD1 CE HE1 319.2 299.9
HD11 CD1 CE HE2 209.8 179.9
CE CD1 HD11 CG1 232.1 240.0
CE CD1 HD11 HD12 116.0 120.0
CG1 CD1 HD11 HD12 243.9 240.0
HD11 CD1 CG1 CB 225.5 300.0
HD11 CD1 CG1 HG11 350.8 180.0
HD11 CD1 CG1 HG12 100.2 60.0
HD12 CD1 CE HE1 68.6 59.9
HD12 CD1 CE HE2 319.2 299.9
CE CD1 HD12 CG1 127.9 120.1
CE CD1 HD12 HD11 244.0 240.0
CG1 CD1 HD12 HD11 116.0 120.0
HD12 CD1 CG1 CB 116.1 180.0
HD12 CD1 CG1 HG11 241.4 60.0
HD12 CD1 CG1 HG12 350.8 300.0
CG1 CB CA HA 209.5 60.0
CA CB CG1 CG2 136.2 239.9
CA CB CG1 HB 243.5 119.9
CG1 CB CG2 HG21 214.5 180.0
CG1 CB CG2 HG22 105.0 300.0
CG2 CB CG1 HB 107.4 240.0
CB CG1 CD1 HD11 225.5 300.0
CB CG1 CD1 HD12 116.1 180.0
CD1 CG1 CB HG11 125.3 240.0
CD1 CG1 CB HG12 234.7 120.0
HG11 CG1 CB HG12 109.5 240.0
HG11 CG1 CD1 HD11 350.8 180.0
HG11 CG1 CD1 HD12 241.4 60.0
CD1 CG1 HG11 CB 230.7 120.0
CD1 CG1 HG11 HG12 115.3 240.0
CB CG1 HG11 HG12 244.6 120.0
HG11 CG1 CB HB 167.8 180.1
HG12 CG1 CD1 HD11 100.2 60.0
HG12 CG1 CD1 HD12 350.8 300.0
CD1 CG1 HG12 CB 129.3 240.0
CD1 CG1 HG12 HG11 244.7 120.0
CB CG1 HG12 HG11 115.4 240.0
HG12 CG1 CB HB 58.3 300.0
HB CB CA HA 96.4 179.9
CA CB HB CG2 241.2 120.0
CA CB HB CG1 124.2 240.1
HB CB CG2 HG21 321.8 60.0
HB CB CG2 HG22 212.3 180.0
CG2 CB HB CG1 243.0 120.0
HB CB CG1 HG11 167.8 180.1
HB CB CG1 HG12 58.3 300.0
O1 C1 N HN 173.2 180.0
N C1 O1 O2 180.6 180.1
O1 C1 O2 C3 16.2 360.0
O2 C1 N HN 353.8 0.1
N C1 O2 O1 179.4 179.9
C1 O2 C3 C4 176.8 180.0
C1 O2 C3 C6 63.1 60.1
C1 O2 C3 C5 295.0 300.0
O2 C3 C4 H41 180.0 180.0
O2 C3 C4 H42 305.3 300.0
O2 C3 C4 H43 54.7 60.0
C4 C3 O2 C6 113.7 120.0
C4 C3 O2 C5 241.8 240.0
C6 C3 O2 C5 128.1 120.1
O2 C3 C6 H61 180.0 60.0
O2 C3 C6 H62 305.3 179.9
O2 C3 C6 H63 54.8 300.0
O2 C3 C5 H51 180.1 300.1
O2 C3 C5 H52 305.2 60.0
O2 C3 C5 H53 54.7 180.0
O2 C3 C4 C6 243.1 240.0
O2 C3 C4 C5 118.5 120.0
H41 C4 C3 H42 234.7 240.0
H41 C4 C3 H43 125.2 120.0
H42 C4 C3 H43 250.6 240.0
C6 C3 C4 C5 235.5 240.0
C4 C3 C6 H61 66.9 300.0
C4 C3 C6 H62 192.2 60.0
C4 C3 C6 H63 301.7 180.0
C4 C3 C5 H51 295.2 60.0
C4 C3 C5 H52 60.4 180.0
C4 C3 C5 H53 169.8 300.0
C3 C4 H41 H42 125.3 120.0
C3 C4 H41 H43 234.7 240.0
H41 C4 C3 C6 296.9 300.0
H41 C4 C3 C5 61.5 60.0
H42 C4 H41 H43 109.4 120.0
C3 C4 H42 H41 239.6 240.0
C3 C4 H42 H43 119.8 120.0
H42 C4 C3 C6 62.2 60.0
H42 C4 C3 C5 186.8 180.0
H41 C4 H42 H43 240.2 240.0
C3 C4 H43 H41 120.4 120.1
C3 C4 H43 H42 240.2 240.0
H43 C4 C3 C6 171.7 180.0
H43 C4 C3 C5 296.2 300.0
H41 C4 H43 H42 119.8 119.9
O2 C3 C6 C4 113.1 120.0
O2 C3 C6 C5 234.4 239.9
C6 C3 C4 H41 296.9 300.0
C6 C3 C4 H42 62.2 60.0
C6 C3 C4 H43 171.7 180.0
C4 C3 C6 C5 121.4 120.0
C6 C3 C5 H51 54.4 180.0
C6 C3 C5 H52 179.5 300.0
C6 C3 C5 H53 289.0 60.0
H61 C6 C3 H62 234.7 240.0
H61 C6 C3 H63 125.2 120.0
H62 C6 C3 H63 250.5 240.0
O2 C3 C5 C4 244.9 240.0
O2 C3 C5 C6 125.7 120.0
C5 C3 C4 H41 61.5 60.0
C5 C3 C4 H42 186.8 180.0
C5 C3 C4 H43 296.2 300.0
C4 C3 C5 C6 240.8 240.0
C5 C3 C6 H61 305.5 180.0
C5 C3 C6 H62 70.8 300.0
C5 C3 C6 H63 180.3 60.0
H51 C5 C3 H52 234.8 240.1
H51 C5 C3 H53 125.4 120.1
H52 C5 C3 H53 250.6 240.0
H61 C6 C3 C5 305.5 180.0
C3 C6 H61 H62 125.3 120.0
C3 C6 H61 H63 234.8 240.0
H62 C6 H61 H63 109.5 120.0
H62 C6 C3 C5 70.8 300.0
C3 C6 H62 H61 235.4 240.0
C3 C6 H62 H63 117.7 120.0
H61 C6 H62 H63 242.3 240.1
H63 C6 C3 C5 180.3 60.0
C3 C6 H63 H61 124.5 120.1
C3 C6 H63 H62 242.3 240.0
H61 C6 H63 H62 117.8 119.9
C3 C5 H51 H52 125.2 119.9
C3 C5 H51 H53 234.7 239.9
H52 C5 H51 H53 109.5 120.0
C3 C5 H52 H51 235.7 240.0
C3 C5 H52 H53 117.8 120.0
H51 C5 H52 H53 242.1 240.0
C3 C5 H53 H51 124.4 120.1
C3 C5 H53 H52 242.2 240.1
H51 C5 H53 H52 117.8 120.0