PDB Chemical Component TC5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TC5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C5	C4	1.499	1.530
C4	C3	1.555	1.530
C3	N	1.429	1.469
N	P	1.861	1.683
P	O2	1.515	1.480
P	O3	1.781	1.610
P	OXT	1.658	1.610
O3	C1	1.458	1.429
C1	C2	1.568	1.530
C5	H51C	1.100	1.090
C5	H52C	1.100	1.089
C5	H53C	1.100	1.090
C4	H41C	1.100	1.090
C4	H42C	1.100	1.090
C3	H31C	1.100	1.090
C3	H32C	1.100	1.090
N	H	1.000	1.009
OXT	HXT	0.950	0.967
C1	H11C	1.100	1.091
C1	H12C	1.100	1.090
C2	H21C	1.100	1.090
C2	H22C	1.100	1.090
C2	H23C	1.100	1.090

Bond Angles for TC5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C5	C4	C3	106.4	109.5
C4	C5	H51C	109.5	109.5
C4	C5	H52C	109.5	109.5
C4	C5	H53C	109.5	109.5
C5	C4	H41C	110.5	109.5
C5	C4	H42C	111.2	109.5
C4	C3	N	101.5	109.5
C3	C4	H41C	110.5	109.5
C3	C4	H42C	111.2	109.5
C4	C3	H31C	112.2	109.5
C4	C3	H32C	113.9	109.5
C3	N	P	123.3	111.0
N	C3	H31C	112.2	109.5
N	C3	H32C	113.9	109.5
C3	N	H	105.1	111.0
N	P	O2	114.1	109.5
N	P	O3	111.2	109.5
N	P	OXT	103.3	109.5
P	N	H	105.1	111.0
O2	P	O3	109.9	109.5
O2	P	OXT	112.1	109.4
O3	P	OXT	105.9	109.5
P	O3	C1	122.2	123.0
P	OXT	HXT	109.5	114.0
O3	C1	C2	109.6	109.5
O3	C1	H11C	109.4	109.5
O3	C1	H12C	109.4	109.4
C2	C1	H11C	109.4	109.5
C2	C1	H12C	109.4	109.5
C1	C2	H21C	109.5	109.5
C1	C2	H22C	109.5	109.5
C1	C2	H23C	109.4	109.5
H51C	C5	H52C	109.5	109.5
H51C	C5	H53C	109.4	109.4
H52C	C5	H53C	109.5	109.5
H41C	C4	H42C	107.1	109.4
H31C	C3	H32C	103.5	109.4
H11C	C1	H12C	109.6	109.4
H21C	C2	H22C	109.5	109.5
H21C	C2	H23C	109.5	109.4
H22C	C2	H23C	109.5	109.5

Torsion Angles for TC5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C4	C3	N	227.7	180.0
C3	C4	C5	H41C	240.0	240.0
C3	C4	C5	H42C	121.2	120.0
C5	C4	C3	H31C	347.7	300.0
C5	C4	C3	H32C	104.9	60.0
H51C	C5	C4	H52C	240.0	240.0
H51C	C5	C4	H53C	120.0	120.0
H52C	C5	C4	H53C	240.0	240.0
H41C	C4	C5	H42C	241.2	240.0
C3	C4	C5	H51C	99.8	300.0
C3	C4	C5	H52C	219.8	60.0
C3	C4	C5	H53C	339.8	180.0
C5	C4	C3	H41C	120.0	120.0
C5	C4	C3	H42C	238.8	240.0
C4	C3	N	P	145.3	135.0
N	C3	C4	H31C	240.0	240.0
N	C3	C4	H32C	122.8	120.0
C4	C3	N	H	265.3	259.0
H41C	C4	C3	H42C	118.8	120.0
H31C	C3	C4	H32C	242.8	240.0
N	C3	C4	H41C	107.7	60.0
N	C3	C4	H42C	348.9	300.0
C4	C3	N	H31C	120.0	120.0
C4	C3	N	H32C	237.2	240.0
C3	N	P	O2	234.0	180.0
C3	N	P	O3	358.9	300.0
C3	N	P	OXT	112.1	60.0
P	N	C3	H	240.0	236.0
H31C	C3	N	H32C	117.2	120.0
P	N	C3	H31C	25.3	14.9
P	N	C3	H32C	268.1	255.0
C3	N	P	H	120.0	124.0
O2	P	N	O3	235.1	240.0
O2	P	N	OXT	121.9	120.0
O3	P	N	OXT	246.8	240.0
N	P	O3	C1	324.8	290.0
N	P	OXT	HXT	304.8	300.0
N	P	O2	O3	125.6	120.0
N	P	O2	OXT	243.0	240.0
O2	P	N	H	114.0	56.0
O3	P	O2	OXT	117.4	120.0
O2	P	O3	C1	92.0	50.0
O2	P	OXT	HXT	181.6	180.0
N	P	O3	O2	232.8	240.0
N	P	O3	OXT	111.5	120.0
O3	P	N	H	238.9	176.0
O2	P	O3	OXT	238.8	240.0
O3	P	OXT	HXT	61.8	60.0
P	O3	C1	C2	177.5	180.0
P	O3	C1	H11C	297.5	300.0
P	O3	C1	H12C	57.5	60.0
N	P	OXT	O2	123.3	120.0
N	P	OXT	O3	243.0	240.0
OXT	P	N	H	352.1	296.0
O2	P	OXT	O3	119.8	120.0
OXT	P	O3	C1	213.2	170.0
C1	O3	P	OXT	213.2	170.0
C2	C1	O3	H11C	240.0	239.9
C2	C1	O3	H12C	119.9	120.0
O3	C1	C2	H21C	269.9	180.0
O3	C1	C2	H22C	29.9	300.0
O3	C1	C2	H23C	149.9	60.0
H11C	C1	O3	H12C	239.9	240.1
O3	C1	C2	H11C	120.0	120.0
O3	C1	C2	H12C	240.1	240.0
H11C	C1	C2	H12C	120.1	120.0
H21C	C2	C1	H22C	240.0	240.0
H21C	C2	C1	H23C	120.0	119.9
H22C	C2	C1	H23C	240.0	239.9
H51C	C5	C4	C3	99.8	300.0
C4	C5	H51C	H52C	120.0	120.0
C4	C5	H51C	H53C	240.0	240.0
H51C	C5	C4	H41C	219.8	60.0
H51C	C5	C4	H42C	338.6	180.0
H52C	C5	H51C	H53C	120.0	120.0
H52C	C5	C4	C3	219.8	60.0
C4	C5	H52C	H51C	239.9	240.0
C4	C5	H52C	H53C	120.0	120.0
H52C	C5	C4	H41C	339.8	180.0
H52C	C5	C4	H42C	98.6	300.0
H51C	C5	H52C	H53C	240.1	240.0
H53C	C5	C4	C3	339.8	180.0
C4	C5	H53C	H51C	120.0	120.0
C4	C5	H53C	H52C	240.0	240.0
H53C	C5	C4	H41C	99.8	300.0
H53C	C5	C4	H42C	218.6	60.0
H51C	C5	H53C	H52C	120.0	120.0
C5	C4	H41C	C3	242.5	240.0
H41C	C4	C5	H51C	219.8	60.0
H41C	C4	C5	H52C	339.8	180.0
H41C	C4	C5	H53C	99.8	300.0
C5	C4	H41C	H42C	121.2	120.0
H41C	C4	C3	N	107.7	60.0
C3	C4	H41C	H42C	238.7	240.0
H41C	C4	C3	H31C	227.7	180.0
H41C	C4	C3	H32C	344.9	300.0
C5	C4	H42C	C3	118.3	120.0
H42C	C4	C5	H51C	338.6	180.0
H42C	C4	C5	H52C	98.6	300.0
H42C	C4	C5	H53C	218.6	60.0
C5	C4	H42C	H41C	239.2	240.0
H42C	C4	C3	N	348.9	300.0
C3	C4	H42C	H41C	120.8	120.0
H42C	C4	C3	H31C	108.9	60.0
H42C	C4	C3	H32C	226.1	180.0
C4	C3	H31C	N	246.4	240.0
H31C	C3	C4	H41C	227.7	180.0
H31C	C3	C4	H42C	108.9	60.0
C4	C3	H31C	H32C	123.2	120.0
H31C	C3	N	P	25.3	14.9
N	C3	H31C	H32C	236.8	240.0
H31C	C3	N	H	145.4	138.9
C4	C3	H32C	N	115.8	120.0
H32C	C3	C4	H41C	344.9	300.0
H32C	C3	C4	H42C	226.1	180.0
C4	C3	H32C	H31C	237.9	240.0
H32C	C3	N	P	268.1	255.0
N	C3	H32C	H31C	122.1	120.0
H32C	C3	N	H	28.2	19.0
C3	N	H	P	228.6	236.0
H	N	C3	H31C	145.4	138.9
H	N	C3	H32C	28.2	19.0
H	N	P	O2	114.0	56.0
H	N	P	O3	238.9	176.0
H	N	P	OXT	352.1	296.0
O3	C1	H11C	C2	239.9	240.0
O3	C1	H11C	H12C	120.0	119.9
C2	C1	H11C	H12C	240.0	240.0
H11C	C1	C2	H21C	149.9	59.9
H11C	C1	C2	H22C	270.0	180.0
H11C	C1	C2	H23C	29.9	300.0
O3	C1	H12C	C2	120.0	120.0
O3	C1	H12C	H11C	240.0	240.1
C2	C1	H12C	H11C	120.0	120.1
H12C	C1	C2	H21C	29.8	299.9
H12C	C1	C2	H22C	149.9	59.9
H12C	C1	C2	H23C	269.9	180.0
H21C	C2	C1	H11C	149.9	59.9
H21C	C2	C1	H12C	29.8	299.9
C1	C2	H21C	H22C	120.0	120.0
C1	C2	H21C	H23C	240.0	240.0
H22C	C2	H21C	H23C	120.0	120.0
H22C	C2	C1	H11C	270.0	180.0
H22C	C2	C1	H12C	149.9	59.9
C1	C2	H22C	H21C	239.9	240.0
C1	C2	H22C	H23C	120.0	120.0
H21C	C2	H22C	H23C	240.0	240.1
H23C	C2	C1	H11C	29.9	300.0
H23C	C2	C1	H12C	269.9	180.0
C1	C2	H23C	H21C	120.0	120.0
C1	C2	H23C	H22C	240.0	239.9
H21C	C2	H23C	H22C	120.0	120.0