PDB Chemical Component TBO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TBO

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C1A 1.453 1.392
N1 C2 1.433 1.349
N1 HN1 1.020 0.970
C1A C3A 1.330 1.400
C1A C10 1.427 1.388
C2 S2 1.682 1.712
C2 N3 1.382 1.329
N3 C3A 1.385 1.426
N3 C4 1.423 1.455
C3A C7A 1.398 1.362
C4 C5 1.487 1.502
C4 H41 1.114 1.089
C4 H42 1.115 1.090
C5 N6 1.464 1.427
C5 C11 1.464 1.530
C5 H5 1.116 1.089
N6 C7 1.434 1.449
N6 C12 1.517 1.469
C7 C7A 1.491 1.512
C7 H71 1.115 1.089
C7 H72 1.115 1.090
C7A C8 1.423 1.399
C8 CL8 1.763 1.736
C8 C9 1.418 1.380
C9 C10 1.454 1.380
C9 H9 1.103 1.079
C10 H10 1.103 1.080
C11 H111 1.115 1.089
C11 H112 1.115 1.089
C11 H113 1.115 1.090
C12 C13 1.520 1.506
C12 H121 1.114 1.090
C12 H122 1.115 1.089
C13 C14 1.321 1.310
C13 H13 1.104 1.080
C14 C15 1.487 1.506
C14 C16 1.508 1.507
C15 H151 1.115 1.089
C15 H152 1.116 1.090
C15 H153 1.115 1.090
C16 H161 1.115 1.090
C16 H162 1.115 1.090
C16 H163 1.115 1.089

Bond Angles for TBO

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1A N1 C2 106.5 108.0
C1A N1 HN1 113.3 126.1
N1 C1A C3A 105.5 107.6
N1 C1A C10 135.6 133.0
C2 N1 HN1 113.3 126.0
N1 C2 S2 127.1 125.9
N1 C2 N3 107.8 108.3
C3A C1A C10 117.8 119.4
C1A C3A N3 113.4 103.9
C1A C3A C7A 126.2 121.1
C1A C10 C9 119.5 119.1
C1A C10 H10 119.3 120.4
S2 C2 N3 125.1 125.8
C2 N3 C3A 106.7 108.3
C2 N3 C4 120.5 131.5
C3A N3 C4 129.2 119.9
N3 C3A C7A 119.5 134.9
N3 C4 C5 110.2 110.9
N3 C4 H41 111.9 109.3
N3 C4 H42 111.9 109.2
C3A C7A C7 120.7 126.6
C3A C7A C8 118.1 118.2
C5 C4 H41 111.9 109.2
C5 C4 H42 111.9 109.2
C4 C5 N6 116.2 113.5
C4 C5 C11 100.6 108.6
C4 C5 H5 109.4 108.7
H41 C4 H42 98.5 109.1
N6 C5 C11 103.6 108.6
N6 C5 H5 106.6 108.6
C5 N6 C7 112.6 112.7
C5 N6 C12 123.7 106.7
C11 C5 H5 120.9 108.6
C5 C11 H111 100.6 109.5
C5 C11 H112 115.6 109.5
C5 C11 H113 115.6 109.5
C7 N6 C12 116.7 106.7
N6 C7 C7A 109.7 112.4
N6 C7 H71 112.1 109.0
N6 C7 H72 112.1 109.0
N6 C12 C13 109.5 109.5
N6 C12 H121 112.2 109.5
N6 C12 H122 112.2 109.5
C7A C7 H71 112.1 108.9
C7A C7 H72 112.1 108.8
C7 C7A C8 121.1 115.2
H71 C7 H72 98.4 108.7
C7A C8 CL8 120.5 119.6
C7A C8 C9 118.8 120.8
CL8 C8 C9 120.6 119.6
C8 C9 C10 119.7 120.4
C8 C9 H9 118.9 119.8
C10 C9 H9 121.3 119.8
C9 C10 H10 121.2 120.5
H111 C11 H112 115.7 109.5
H111 C11 H113 115.6 109.4
H112 C11 H113 94.9 109.5
C13 C12 H121 112.2 109.5
C13 C12 H122 112.2 109.5
C12 C13 C14 130.8 120.0
C12 C13 H13 123.3 120.0
H121 C12 H122 98.3 109.4
C14 C13 H13 105.9 119.9
C13 C14 C15 107.3 120.1
C13 C14 C16 121.5 120.0
C15 C14 C16 131.1 120.0
C14 C15 H151 107.3 109.5
C14 C15 H152 113.0 109.5
C14 C15 H153 113.1 109.5
C14 C16 H161 121.5 109.5
C14 C16 H162 107.9 109.5
C14 C16 H163 107.9 109.5
H151 C15 H152 113.0 109.5
H151 C15 H153 113.0 109.4
H152 C15 H153 97.4 109.4
H161 C16 H162 108.0 109.4
H161 C16 H163 107.9 109.5
H162 C16 H163 102.0 109.5

Torsion Angles for TBO

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C1A HN1 125.2 180.0
C1A N1 C2 S2 179.0 196.1
C1A N1 C2 N3 359.8 16.1
C3A C1A N1 C10 193.0 179.1
N1 C1A C3A N3 0.1 352.8
N1 C1A C3A C7A 169.6 169.2
N1 C1A C10 C9 194.2 185.5
N1 C1A C10 H10 14.2 5.5
C1A N1 C2 HN1 234.7 180.0
C2 N1 C1A C3A 0.1 355.1
C2 N1 C1A C10 167.1 176.0
S2 C2 N1 N3 179.2 180.0
N1 C2 N3 C3A 0.3 339.1
N1 C2 N3 C4 160.6 152.6
C1A N1 HN1 C2 121.5 180.0
HN1 N1 C1A C3A 234.9 175.1
HN1 N1 C1A C10 41.9 356.0
HN1 N1 C2 S2 304.2 16.2
HN1 N1 C2 N3 125.0 196.1
C3A C1A N1 C2 0.1 355.1
C3A C1A N1 HN1 234.9 175.1
N1 C1A C3A C10 169.8 180.8
C3A C1A C10 C9 0.1 6.4
C3A C1A C10 H10 180.1 186.5
C2 N3 C3A C1A 359.8 17.2
C1A C3A N3 C4 201.7 202.8
N3 C3A C1A C7A 190.4 183.5
C1A C3A C7A C7 175.8 189.0
C1A C3A C7A C8 0.1 9.2
C10 C1A N1 C2 167.1 176.0
C10 C1A N1 HN1 41.9 356.0
N1 C1A C10 C3A 194.1 179.0
C10 C1A C3A N3 190.3 172.0
C10 C1A C3A C7A 359.9 348.5
C8 C9 C10 C1A 360.0 0.5
C1A C10 C9 H9 180.0 180.6
C9 C10 C1A H10 180.0 180.0
S2 C2 N1 HN1 304.2 16.2
N1 C2 S2 N3 180.9 180.0
S2 C2 N3 C3A 181.0 159.0
S2 C2 N3 C4 341.4 332.6
N3 C2 N1 HN1 125.0 196.1
N1 C2 N3 S2 179.2 180.0
C1A C3A N3 C2 359.8 17.2
C3A N3 C2 C4 199.6 186.4
C2 N3 C3A C7A 189.5 201.5
C2 N3 C4 C5 129.5 136.0
C2 N3 C4 H41 254.8 15.6
C2 N3 C4 H42 4.3 256.4
N3 C3A C1A C10 190.3 172.0
C1A C3A N3 C7A 170.3 175.8
C2 N3 C3A C4 158.1 174.4
C3A N3 C4 C5 285.0 309.0
C3A N3 C4 H41 50.3 188.6
C3A N3 C4 H42 159.7 69.3
N3 C3A C7A C7 344.8 4.2
N3 C3A C7A C8 169.1 184.4
C2 N3 C4 C3A 204.5 187.1
C4 N3 C3A C7A 31.4 27.0
C5 C4 N3 H41 234.7 120.4
C5 C4 N3 H42 125.2 239.7
N3 C4 C5 N6 48.4 80.3
N3 C4 C5 C11 159.4 201.3
N3 C4 C5 H5 287.6 319.3
H41 C4 N3 H42 250.5 119.3
C7A C3A C1A C10 359.9 348.5
C1A C3A C7A N3 191.0 184.8
C7A C3A N3 C4 31.4 27.0
N6 C7 C7A C3A 63.0 323.6
C3A C7A C7 H71 297.8 84.4
C3A C7A C7 H72 188.3 202.8
C7 C7A C3A C8 175.7 179.8
C3A C7A C8 CL8 183.0 177.9
C3A C7A C8 C9 0.0 357.9
N3 C4 C5 H41 125.3 239.6
N3 C4 C5 H42 234.8 120.3
H41 C4 C5 H42 109.5 240.7
N6 C5 C4 C11 249.0 239.0
N6 C5 C4 H5 120.7 121.0
C4 C5 N6 C7 30.2 266.8
C4 C5 N6 C12 179.8 150.0
C11 C5 C4 H5 231.7 242.0
C4 C5 C11 H111 180.0 51.6
C4 C5 C11 H112 305.3 171.6
C4 C5 C11 H113 54.8 291.6
N3 C4 H41 C5 235.7 121.4
N3 C4 H41 H42 117.8 240.7
C5 C4 H41 H42 242.1 119.3
H41 C4 C5 N6 283.1 200.7
H41 C4 C5 C11 34.1 321.7
H41 C4 C5 H5 162.4 79.7
N3 C4 H42 C5 124.3 238.7
N3 C4 H42 H41 242.2 119.4
C5 C4 H42 H41 117.9 240.7
H42 C4 C5 N6 173.6 320.0
H42 C4 C5 C11 284.6 81.0
H42 C4 C5 H5 52.8 199.0
N6 C5 C4 H41 283.1 200.7
N6 C5 C4 H42 173.6 320.0
C4 C5 N6 C11 109.3 121.0
C4 C5 N6 H5 237.8 239.0
C11 C5 N6 H5 128.6 118.0
N6 C5 C11 H111 300.4 175.5
N6 C5 C11 H112 65.7 295.6
N6 C5 C11 H113 175.2 55.6
C7 N6 C5 C12 210.4 116.8
C5 N6 C7 C7A 269.1 68.2
C5 N6 C7 H71 34.3 307.4
C5 N6 C7 H72 143.8 188.9
C5 N6 C12 C13 112.0 175.4
C5 N6 C12 H121 237.2 295.5
C5 N6 C12 H122 346.7 55.4
C11 C5 C4 H41 34.1 321.7
C11 C5 C4 H42 284.6 81.0
C4 C5 C11 N6 239.5 236.0
C4 C5 C11 H5 120.3 118.0
N6 C5 C11 H5 240.8 242.0
C11 C5 N6 C7 281.0 145.8
C11 C5 N6 C12 70.6 29.0
H111 C11 C5 H112 234.7 239.9
H111 C11 C5 H113 125.2 120.0
H112 C11 C5 H113 250.5 240.0
H5 C5 C4 H41 162.4 79.7
H5 C5 C4 H42 52.8 199.0
C4 C5 H5 N6 126.4 124.0
C4 C5 H5 C11 244.1 242.0
N6 C5 H5 C11 117.7 118.0
H5 C5 N6 C7 152.4 27.8
H5 C5 N6 C12 302.0 271.0
H5 C5 C11 H111 59.7 293.5
H5 C5 C11 H112 184.9 53.6
H5 C5 C11 H113 294.5 173.6
C3A C7A C7 N6 63.0 323.6
C7 N6 C5 C11 281.0 145.8
C7 N6 C5 H5 152.4 27.8
C5 N6 C7 C12 151.9 243.3
C7 N6 C12 C13 260.4 54.8
C7 N6 C12 H121 25.7 174.8
C7 N6 C12 H122 135.2 294.8
C7A C7 N6 H71 234.8 120.8
C7A C7 N6 H72 125.2 239.3
N6 C7 C7A C8 238.6 143.4
H71 C7 N6 H72 250.5 118.5
C12 N6 C5 C11 70.6 29.0
C12 N6 C5 H5 302.0 271.0
C5 N6 C12 C7 211.5 120.6
C12 N6 C7 C7A 117.2 184.9
C12 N6 C7 H71 242.4 64.2
C12 N6 C7 H72 352.0 305.7
C13 C12 N6 H121 234.7 240.0
C13 C12 N6 H122 125.2 120.0
N6 C12 C13 C14 153.8 231.8
N6 C12 C13 H13 333.8 51.8
H121 C12 N6 H122 250.5 240.1
C3A C7A C7 C8 184.4 180.2
C7A C7 N6 C12 117.2 184.9
N6 C7 C7A H71 125.2 239.2
N6 C7 C7A H72 234.8 120.8
H71 C7 C7A H72 109.5 241.6
C7 C7A C8 CL8 7.3 358.1
C7 C7A C8 C9 184.3 178.1
H71 C7 N6 C12 242.4 64.2
N6 C7 H71 C7A 236.1 122.9
N6 C7 H71 H72 118.1 241.4
C7A C7 H71 H72 241.9 118.4
H71 C7 C7A C8 113.4 264.3
H72 C7 N6 C12 352.0 305.7
N6 C7 H72 C7A 123.9 237.1
N6 C7 H72 H71 241.9 118.6
C7A C7 H72 H71 118.1 241.5
H72 C7 C7A C8 3.8 22.6
C3A C7A C8 C7 175.7 179.8
C8 C7A C7 H71 113.4 264.3
C8 C7A C7 H72 3.8 22.6
CL8 C8 C7A C9 183.0 180.0
C7A C8 C9 C10 360.0 357.2
C7A C8 C9 H9 180.0 177.2
C7A C8 CL8 C9 177.0 180.0
CL8 C8 C9 C10 177.0 177.2
CL8 C8 C9 H9 357.0 357.2
C1A C10 C9 C8 360.0 0.5
C7A C8 C9 CL8 183.0 180.0
C10 C9 C8 H9 180.0 180.1
C8 C9 C10 H10 180.0 180.5
C1A C10 C9 H10 180.0 180.0
C8 C9 C10 H9 180.0 179.9
C8 C9 H9 C10 180.0 180.1
H9 C9 C10 H10 0.0 0.5
C1A C10 H10 C9 180.0 180.0
H10 C10 C9 H9 0.0 0.5
H111 C11 C5 H5 59.7 293.5
C5 C11 H111 H112 125.3 120.0
C5 C11 H111 H113 234.8 240.0
H112 C11 H111 H113 109.5 120.0
H112 C11 C5 H5 184.9 53.6
C5 C11 H112 H111 242.9 239.9
C5 C11 H112 H113 121.4 120.0
H111 C11 H112 H113 238.5 240.0
H113 C11 C5 H5 294.5 173.6
C5 C11 H113 H111 117.0 120.0
C5 C11 H113 H112 238.6 240.0
H111 C11 H113 H112 121.5 120.0
N6 C12 C13 H121 125.3 120.0
N6 C12 C13 H122 234.8 240.0
H121 C12 C13 H122 109.5 119.9
C14 C13 C12 H13 180.0 180.0
C12 C13 C14 C15 176.9 172.6
C12 C13 C14 C16 359.0 352.6
N6 C12 H121 C13 236.2 240.0
N6 C12 H121 H122 118.1 120.0
C13 C12 H121 H122 241.9 240.0
H121 C12 C13 C14 28.5 111.8
H121 C12 C13 H13 208.5 291.8
N6 C12 H122 C13 123.8 120.1
N6 C12 H122 H121 241.9 240.0
C13 C12 H122 H121 118.1 120.0
H122 C12 C13 C14 279.0 351.8
H122 C12 C13 H13 99.0 171.8
C14 C13 C12 H121 28.5 111.8
C14 C13 C12 H122 279.0 351.8
C12 C13 C14 H13 180.0 180.0
C15 C14 C13 C16 178.0 179.9
C13 C14 C15 H151 180.0 180.0
C13 C14 C15 H152 305.3 300.0
C13 C14 C15 H153 54.7 60.0
C13 C14 C16 H161 180.0 5.3
C13 C14 C16 H162 305.3 125.2
C13 C14 C16 H163 54.8 245.2
H13 C13 C12 H121 208.5 291.8
H13 C13 C12 H122 99.0 171.8
C12 C13 H13 C14 180.0 180.0
H13 C13 C14 C15 356.9 352.6
H13 C13 C14 C16 179.0 172.6
C15 C14 C13 H13 356.9 352.6
C13 C14 C15 C16 182.3 180.1
C15 C14 C16 H161 2.6 185.3
C15 C14 C16 H162 127.8 305.3
C15 C14 C16 H163 237.4 65.3
H151 C15 C14 H152 234.8 240.0
H151 C15 C14 H153 125.3 120.0
H152 C15 C14 H153 250.6 240.0
C16 C14 C13 H13 179.0 172.6
C13 C14 C16 C15 177.4 179.9
C16 C14 C15 H151 357.7 359.9
C16 C14 C15 H152 123.0 120.0
C16 C14 C15 H153 232.4 240.0
H161 C16 C14 H162 234.7 240.1
H161 C16 C14 H163 125.2 120.0
H162 C16 C14 H163 250.5 240.0
H151 C15 C14 C16 357.7 359.9
C14 C15 H151 H152 125.3 120.1
C14 C15 H151 H153 234.7 240.0
H152 C15 H151 H153 109.4 119.9
H152 C15 C14 C16 123.0 120.0
C14 C15 H152 H151 237.9 239.9
C14 C15 H152 H153 119.0 120.0
H151 C15 H152 H153 241.1 240.1
H153 C15 C14 C16 232.4 240.0
C14 C15 H153 H151 122.2 120.1
C14 C15 H153 H152 241.1 240.0
H151 C15 H153 H152 118.9 119.9
C14 C16 H161 H162 125.2 120.0
C14 C16 H161 H163 234.8 239.9
H162 C16 H161 H163 109.6 120.0
C14 C16 H162 H161 227.0 240.0
C14 C16 H162 H163 113.5 120.1
H161 C16 H162 H163 246.5 240.0
C14 C16 H163 H161 132.9 120.0
C14 C16 H163 H162 246.5 240.0
H161 C16 H163 H162 113.6 119.9