PDB Chemical Component TBG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TBG
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.461 |
1.469 |
| N |
H |
1.000 |
1.008 |
| N |
H2 |
1.000 |
1.009 |
| CA |
CB |
1.550 |
1.530 |
| CA |
C |
1.535 |
1.507 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CG1 |
1.516 |
1.531 |
| CB |
CG2 |
1.526 |
1.531 |
| CB |
CG3 |
1.496 |
1.530 |
| CG1 |
HG11 |
1.100 |
1.090 |
| CG1 |
HG12 |
1.100 |
1.090 |
| CG1 |
HG13 |
1.100 |
1.090 |
| CG2 |
HG21 |
1.100 |
1.090 |
| CG2 |
HG22 |
1.100 |
1.089 |
| CG2 |
HG23 |
1.100 |
1.090 |
| CG3 |
HG31 |
1.100 |
1.091 |
| CG3 |
HG32 |
1.100 |
1.090 |
| CG3 |
HG33 |
1.100 |
1.090 |
| C |
O |
1.238 |
1.207 |
| C |
OXT |
1.330 |
1.343 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for TBG
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.1 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
CB |
111.5 |
109.4 |
| N |
CA |
C |
110.0 |
109.4 |
| N |
CA |
HA |
108.6 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| CB |
CA |
C |
112.0 |
109.5 |
| CB |
CA |
HA |
106.5 |
109.4 |
| CA |
CB |
CG1 |
109.9 |
109.5 |
| CA |
CB |
CG2 |
110.3 |
109.5 |
| CA |
CB |
CG3 |
109.6 |
109.5 |
| C |
CA |
HA |
108.0 |
109.5 |
| CA |
C |
O |
121.3 |
120.0 |
| CA |
C |
OXT |
115.5 |
120.0 |
| CG1 |
CB |
CG2 |
110.6 |
109.4 |
| CG1 |
CB |
CG3 |
108.4 |
109.5 |
| CB |
CG1 |
HG11 |
109.5 |
109.4 |
| CB |
CG1 |
HG12 |
109.4 |
109.5 |
| CB |
CG1 |
HG13 |
109.5 |
109.4 |
| CG2 |
CB |
CG3 |
108.0 |
109.4 |
| CB |
CG2 |
HG21 |
109.5 |
109.4 |
| CB |
CG2 |
HG22 |
109.4 |
109.5 |
| CB |
CG2 |
HG23 |
109.4 |
109.5 |
| CB |
CG3 |
HG31 |
109.5 |
109.4 |
| CB |
CG3 |
HG32 |
109.4 |
109.5 |
| CB |
CG3 |
HG33 |
109.5 |
109.5 |
| HG11 |
CG1 |
HG12 |
109.4 |
109.5 |
| HG11 |
CG1 |
HG13 |
109.5 |
109.5 |
| HG12 |
CG1 |
HG13 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG22 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG23 |
109.5 |
109.5 |
| HG22 |
CG2 |
HG23 |
109.5 |
109.5 |
| HG31 |
CG3 |
HG32 |
109.5 |
109.5 |
| HG31 |
CG3 |
HG33 |
109.5 |
109.5 |
| HG32 |
CG3 |
HG33 |
109.5 |
109.5 |
| O |
C |
OXT |
123.3 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
Torsion Angles for TBG
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CB |
CA |
N |
C |
235.1 |
240.0 |
| CB |
CA |
N |
HA |
117.0 |
120.0 |
| N |
CA |
CB |
CG1 |
54.7 |
60.0 |
| N |
CA |
CB |
CG2 |
176.9 |
180.0 |
| N |
CA |
CB |
CG3 |
295.6 |
300.0 |
| C |
CA |
N |
HA |
241.9 |
239.9 |
| N |
CA |
C |
O |
310.6 |
340.0 |
| N |
CA |
C |
OXT |
129.1 |
160.0 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
CB |
180.0 |
300.0 |
| H |
N |
CA |
C |
304.9 |
60.0 |
| H |
N |
CA |
HA |
63.0 |
180.1 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
CB |
300.0 |
64.0 |
| H2 |
N |
CA |
C |
64.9 |
184.0 |
| H2 |
N |
CA |
HA |
183.0 |
304.0 |
| CB |
CA |
N |
H |
180.0 |
300.0 |
| CB |
CA |
N |
H2 |
300.0 |
64.0 |
| N |
CA |
CB |
C |
123.8 |
119.9 |
| N |
CA |
CB |
HA |
241.7 |
240.0 |
| C |
CA |
CB |
HA |
117.9 |
120.1 |
| CB |
CA |
C |
O |
75.2 |
100.0 |
| CB |
CA |
C |
OXT |
253.7 |
280.0 |
| CG1 |
CB |
CA |
CG2 |
237.8 |
240.0 |
| CG1 |
CB |
CA |
CG3 |
119.1 |
120.1 |
| CA |
CB |
CG1 |
HG11 |
180.0 |
59.9 |
| CA |
CB |
CG1 |
HG12 |
300.0 |
180.0 |
| CA |
CB |
CG1 |
HG13 |
60.0 |
300.0 |
| CG2 |
CB |
CA |
CG3 |
241.3 |
240.0 |
| CA |
CB |
CG2 |
HG21 |
180.0 |
60.0 |
| CA |
CB |
CG2 |
HG22 |
300.0 |
180.0 |
| CA |
CB |
CG2 |
HG23 |
60.0 |
300.0 |
| CA |
CB |
CG3 |
HG31 |
180.0 |
60.0 |
| CA |
CB |
CG3 |
HG32 |
300.0 |
180.0 |
| CA |
CB |
CG3 |
HG33 |
60.0 |
300.1 |
| C |
CA |
N |
H |
304.9 |
60.0 |
| C |
CA |
N |
H2 |
64.9 |
184.0 |
| N |
CA |
C |
CB |
235.4 |
240.1 |
| N |
CA |
C |
HA |
118.5 |
120.1 |
| CB |
CA |
C |
HA |
243.0 |
240.0 |
| C |
CA |
CB |
CG1 |
290.9 |
300.1 |
| C |
CA |
CB |
CG2 |
53.1 |
60.0 |
| C |
CA |
CB |
CG3 |
171.8 |
180.0 |
| O |
C |
CA |
OXT |
181.5 |
180.0 |
| CA |
C |
OXT |
HXT |
181.6 |
180.0 |
| HA |
CA |
N |
H |
63.0 |
180.1 |
| HA |
CA |
N |
H2 |
183.0 |
304.0 |
| N |
CA |
HA |
CB |
120.2 |
120.0 |
| N |
CA |
HA |
C |
240.6 |
240.0 |
| CB |
CA |
HA |
C |
120.5 |
120.0 |
| HA |
CA |
CB |
CG1 |
173.0 |
180.0 |
| HA |
CA |
CB |
CG2 |
295.2 |
300.0 |
| HA |
CA |
CB |
CG3 |
53.9 |
60.0 |
| HA |
CA |
C |
O |
192.1 |
220.0 |
| HA |
CA |
C |
OXT |
10.6 |
40.0 |
| CG1 |
CB |
CA |
C |
290.9 |
300.1 |
| CG1 |
CB |
CA |
HA |
173.0 |
180.0 |
| CA |
CB |
CG1 |
CG2 |
122.0 |
120.0 |
| CA |
CB |
CG1 |
CG3 |
240.2 |
239.9 |
| CG2 |
CB |
CG1 |
CG3 |
118.2 |
119.9 |
| CG1 |
CB |
CG2 |
HG21 |
301.8 |
180.0 |
| CG1 |
CB |
CG2 |
HG22 |
61.8 |
300.0 |
| CG1 |
CB |
CG2 |
HG23 |
181.8 |
60.0 |
| CG1 |
CB |
CG3 |
HG31 |
60.0 |
299.9 |
| CG1 |
CB |
CG3 |
HG32 |
180.0 |
59.9 |
| CG1 |
CB |
CG3 |
HG33 |
300.0 |
180.0 |
| HG11 |
CG1 |
CB |
HG12 |
240.0 |
240.0 |
| HG11 |
CG1 |
CB |
HG13 |
120.0 |
119.9 |
| HG12 |
CG1 |
CB |
HG13 |
240.0 |
240.0 |
| CG2 |
CB |
CA |
C |
53.1 |
60.0 |
| CG2 |
CB |
CA |
HA |
295.2 |
300.0 |
| CA |
CB |
CG2 |
CG1 |
238.2 |
240.0 |
| CA |
CB |
CG2 |
CG3 |
119.7 |
120.0 |
| CG1 |
CB |
CG2 |
CG3 |
241.5 |
240.1 |
| CG2 |
CB |
CG1 |
HG11 |
58.0 |
299.9 |
| CG2 |
CB |
CG1 |
HG12 |
178.0 |
60.0 |
| CG2 |
CB |
CG1 |
HG13 |
298.0 |
180.0 |
| CG2 |
CB |
CG3 |
HG31 |
300.1 |
180.0 |
| CG2 |
CB |
CG3 |
HG32 |
60.1 |
300.0 |
| CG2 |
CB |
CG3 |
HG33 |
180.1 |
60.1 |
| HG21 |
CG2 |
CB |
HG22 |
240.0 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
120.0 |
120.0 |
| HG22 |
CG2 |
CB |
HG23 |
240.0 |
240.0 |
| CG3 |
CB |
CA |
C |
171.8 |
180.0 |
| CG3 |
CB |
CA |
HA |
53.9 |
60.0 |
| CA |
CB |
CG3 |
CG1 |
120.0 |
120.1 |
| CA |
CB |
CG3 |
CG2 |
239.9 |
240.0 |
| CG1 |
CB |
CG3 |
CG2 |
119.9 |
119.9 |
| CG3 |
CB |
CG1 |
HG11 |
299.8 |
180.0 |
| CG3 |
CB |
CG1 |
HG12 |
59.8 |
300.1 |
| CG3 |
CB |
CG1 |
HG13 |
179.8 |
60.1 |
| CG3 |
CB |
CG2 |
HG21 |
60.3 |
299.9 |
| CG3 |
CB |
CG2 |
HG22 |
180.3 |
60.0 |
| CG3 |
CB |
CG2 |
HG23 |
300.3 |
180.0 |
| HG31 |
CG3 |
CB |
HG32 |
240.0 |
240.0 |
| HG31 |
CG3 |
CB |
HG33 |
120.0 |
119.9 |
| HG32 |
CG3 |
CB |
HG33 |
240.0 |
239.9 |
| HG11 |
CG1 |
CB |
CG2 |
58.0 |
299.9 |
| HG11 |
CG1 |
CB |
CG3 |
299.8 |
180.0 |
| CB |
CG1 |
HG11 |
HG12 |
120.0 |
120.0 |
| CB |
CG1 |
HG11 |
HG13 |
240.0 |
240.1 |
| HG12 |
CG1 |
HG11 |
HG13 |
120.0 |
120.1 |
| HG12 |
CG1 |
CB |
CG2 |
178.0 |
60.0 |
| HG12 |
CG1 |
CB |
CG3 |
59.8 |
300.1 |
| CB |
CG1 |
HG12 |
HG11 |
240.0 |
240.0 |
| CB |
CG1 |
HG12 |
HG13 |
120.0 |
120.0 |
| HG11 |
CG1 |
HG12 |
HG13 |
240.0 |
239.9 |
| HG13 |
CG1 |
CB |
CG2 |
298.0 |
180.0 |
| HG13 |
CG1 |
CB |
CG3 |
179.8 |
60.1 |
| CB |
CG1 |
HG13 |
HG11 |
120.0 |
119.9 |
| CB |
CG1 |
HG13 |
HG12 |
240.0 |
240.0 |
| HG11 |
CG1 |
HG13 |
HG12 |
120.0 |
120.1 |
| HG21 |
CG2 |
CB |
CG3 |
60.3 |
299.9 |
| CB |
CG2 |
HG21 |
HG22 |
120.0 |
120.1 |
| CB |
CG2 |
HG21 |
HG23 |
240.0 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
120.0 |
120.0 |
| HG22 |
CG2 |
CB |
CG3 |
180.3 |
60.0 |
| CB |
CG2 |
HG22 |
HG21 |
240.0 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
120.0 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
240.0 |
240.0 |
| HG23 |
CG2 |
CB |
CG3 |
300.3 |
180.0 |
| CB |
CG2 |
HG23 |
HG21 |
120.0 |
119.9 |
| CB |
CG2 |
HG23 |
HG22 |
240.0 |
239.9 |
| HG21 |
CG2 |
HG23 |
HG22 |
120.0 |
120.0 |
| CB |
CG3 |
HG31 |
HG32 |
120.0 |
120.0 |
| CB |
CG3 |
HG31 |
HG33 |
240.0 |
240.0 |
| HG32 |
CG3 |
HG31 |
HG33 |
120.0 |
120.1 |
| CB |
CG3 |
HG32 |
HG31 |
240.0 |
240.1 |
| CB |
CG3 |
HG32 |
HG33 |
120.0 |
120.0 |
| HG31 |
CG3 |
HG32 |
HG33 |
240.0 |
240.0 |
| CB |
CG3 |
HG33 |
HG31 |
120.0 |
119.9 |
| CB |
CG3 |
HG33 |
HG32 |
240.0 |
239.9 |
| HG31 |
CG3 |
HG33 |
HG32 |
120.0 |
120.0 |
| O |
C |
CA |
HA |
192.1 |
220.0 |
| CA |
C |
O |
OXT |
178.4 |
180.0 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| OXT |
C |
CA |
HA |
10.6 |
40.0 |
| CA |
C |
OXT |
O |
181.5 |
180.0 |