PDB Chemical Component TBE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for TBE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| S1 |
O12 |
1.438 |
1.437 |
| S1 |
O13 |
1.436 |
1.436 |
| S1 |
C2 |
1.795 |
1.813 |
| C2 |
C3 |
1.572 |
1.562 |
| C2 |
C20 |
1.543 |
1.540 |
| C2 |
C14 |
1.561 |
1.558 |
| C3 |
N4 |
1.475 |
1.453 |
| C3 |
C9 |
1.520 |
1.522 |
| C3 |
H3 |
1.115 |
1.097 |
| N4 |
C5 |
1.339 |
1.325 |
| N4 |
HN4 |
1.020 |
1.016 |
| C5 |
C6 |
1.435 |
1.336 |
| C5 |
H5 |
1.102 |
1.085 |
| C20 |
H201 |
1.114 |
1.095 |
| C20 |
H202 |
1.114 |
1.095 |
| C20 |
H203 |
1.115 |
1.096 |
| C14 |
N15 |
1.471 |
1.463 |
| C14 |
H141 |
1.115 |
1.097 |
| C14 |
H142 |
1.115 |
1.097 |
| N15 |
N16 |
1.331 |
1.332 |
| N15 |
C19 |
1.329 |
1.348 |
| N16 |
N17 |
1.312 |
1.328 |
| N17 |
C18 |
1.341 |
1.367 |
| C18 |
C19 |
1.350 |
1.372 |
| C18 |
H18 |
1.102 |
1.079 |
| C19 |
H19 |
1.102 |
1.081 |
| C9 |
O10 |
1.249 |
1.358 |
| C9 |
O11 |
1.247 |
1.225 |
| O10 |
H10 |
0.950 |
0.981 |
| C6 |
C7 |
1.520 |
1.475 |
| C6 |
H6 |
1.103 |
1.083 |
| C7 |
O8 |
1.194 |
1.225 |
| C7 |
H7 |
1.103 |
1.103 |
| HS1 |
S1 |
1.300 |
1.334 |
Bond Angles for TBE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O12 |
S1 |
O13 |
119.2 |
123.4 |
| O12 |
S1 |
C2 |
107.6 |
106.6 |
| O13 |
S1 |
C2 |
111.9 |
106.6 |
| S1 |
C2 |
C3 |
111.5 |
107.4 |
| S1 |
C2 |
C20 |
108.6 |
106.5 |
| S1 |
C2 |
C14 |
107.3 |
109.7 |
| C3 |
C2 |
C20 |
110.1 |
109.9 |
| C3 |
C2 |
C14 |
110.2 |
111.4 |
| C2 |
C3 |
N4 |
111.5 |
111.2 |
| C2 |
C3 |
C9 |
112.4 |
113.8 |
| C2 |
C3 |
H3 |
106.2 |
110.1 |
| C20 |
C2 |
C14 |
109.0 |
111.8 |
| C2 |
C20 |
H201 |
108.6 |
111.7 |
| C2 |
C20 |
H202 |
112.5 |
111.8 |
| C2 |
C20 |
H203 |
112.5 |
111.0 |
| C2 |
C14 |
N15 |
112.1 |
116.7 |
| C2 |
C14 |
H141 |
111.2 |
110.4 |
| C2 |
C14 |
H142 |
111.2 |
110.7 |
| N4 |
C3 |
C9 |
110.1 |
107.0 |
| N4 |
C3 |
H3 |
108.8 |
106.4 |
| C3 |
N4 |
C5 |
114.8 |
122.3 |
| C3 |
N4 |
HN4 |
110.3 |
119.2 |
| C9 |
C3 |
H3 |
107.7 |
108.0 |
| C3 |
C9 |
O10 |
120.5 |
112.6 |
| C3 |
C9 |
O11 |
120.0 |
124.8 |
| C5 |
N4 |
HN4 |
110.3 |
118.5 |
| N4 |
C5 |
C6 |
122.3 |
127.2 |
| N4 |
C5 |
H5 |
115.2 |
111.3 |
| C6 |
C5 |
H5 |
122.5 |
121.4 |
| C5 |
C6 |
C7 |
122.6 |
119.1 |
| C5 |
C6 |
H6 |
115.7 |
122.5 |
| H201 |
C20 |
H202 |
112.6 |
107.7 |
| H201 |
C20 |
H203 |
112.5 |
108.0 |
| H202 |
C20 |
H203 |
98.0 |
106.3 |
| N15 |
C14 |
H141 |
111.2 |
106.0 |
| N15 |
C14 |
H142 |
111.3 |
106.2 |
| C14 |
N15 |
N16 |
118.3 |
119.9 |
| C14 |
N15 |
C19 |
130.3 |
126.9 |
| H141 |
C14 |
H142 |
99.0 |
106.2 |
| N16 |
N15 |
C19 |
111.4 |
113.2 |
| N15 |
N16 |
N17 |
106.1 |
106.4 |
| N15 |
C19 |
C18 |
105.0 |
102.8 |
| N15 |
C19 |
H19 |
126.9 |
124.0 |
| N16 |
N17 |
C18 |
109.3 |
107.9 |
| N17 |
C18 |
C19 |
108.2 |
109.6 |
| N17 |
C18 |
H18 |
125.6 |
122.0 |
| C19 |
C18 |
H18 |
126.2 |
128.4 |
| C18 |
C19 |
H19 |
128.1 |
133.2 |
| O10 |
C9 |
O11 |
119.6 |
122.7 |
| C9 |
O10 |
H10 |
120.5 |
115.5 |
| C7 |
C6 |
H6 |
121.7 |
118.4 |
| C6 |
C7 |
O8 |
120.3 |
121.9 |
| C6 |
C7 |
H7 |
131.7 |
116.3 |
| O8 |
C7 |
H7 |
108.0 |
121.8 |
Torsion Angles for TBE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O13 |
S1 |
O12 |
C2 |
231.3 |
236.3 |
| O12 |
S1 |
C2 |
C3 |
285.3 |
55.5 |
| O12 |
S1 |
C2 |
C20 |
46.8 |
173.2 |
| O12 |
S1 |
C2 |
C14 |
164.5 |
294.4 |
| O12 |
S1 |
O13 |
C2 |
126.8 |
123.7 |
| O13 |
S1 |
C2 |
C3 |
58.0 |
189.1 |
| O13 |
S1 |
C2 |
C20 |
179.6 |
306.8 |
| O13 |
S1 |
C2 |
C14 |
297.3 |
67.9 |
| O12 |
S1 |
C2 |
O13 |
227.2 |
226.4 |
| C3 |
C2 |
S1 |
C20 |
238.4 |
242.3 |
| C3 |
C2 |
S1 |
C14 |
120.7 |
121.2 |
| S1 |
C2 |
C3 |
N4 |
298.6 |
294.6 |
| S1 |
C2 |
C3 |
C9 |
62.7 |
55.5 |
| S1 |
C2 |
C3 |
H3 |
180.3 |
177.0 |
| C20 |
C2 |
S1 |
C14 |
242.3 |
238.8 |
| S1 |
C2 |
C20 |
H201 |
180.0 |
65.5 |
| S1 |
C2 |
C20 |
H202 |
305.2 |
186.2 |
| S1 |
C2 |
C20 |
H203 |
54.7 |
304.8 |
| S1 |
C2 |
C14 |
N15 |
183.0 |
180.9 |
| S1 |
C2 |
C14 |
H141 |
308.3 |
302.0 |
| S1 |
C2 |
C14 |
H142 |
57.7 |
59.3 |
| S1 |
C2 |
C3 |
C20 |
120.7 |
115.5 |
| S1 |
C2 |
C3 |
C14 |
241.0 |
239.9 |
| C20 |
C2 |
C3 |
C14 |
120.3 |
124.4 |
| C3 |
C2 |
C20 |
H201 |
302.3 |
181.5 |
| C3 |
C2 |
C20 |
H202 |
67.6 |
302.3 |
| C3 |
C2 |
C20 |
H203 |
177.1 |
60.8 |
| C3 |
C2 |
C14 |
N15 |
61.4 |
62.2 |
| C3 |
C2 |
C14 |
H141 |
186.8 |
183.3 |
| C3 |
C2 |
C14 |
H142 |
296.1 |
300.6 |
| N4 |
C3 |
C2 |
C9 |
235.9 |
239.1 |
| N4 |
C3 |
C2 |
H3 |
118.3 |
117.6 |
| C2 |
C3 |
N4 |
C5 |
207.4 |
180.2 |
| C2 |
C3 |
N4 |
HN4 |
82.1 |
0.2 |
| C9 |
C3 |
C2 |
H3 |
242.4 |
238.5 |
| C2 |
C3 |
C9 |
O10 |
276.0 |
92.5 |
| C2 |
C3 |
C9 |
O11 |
95.8 |
272.6 |
| S1 |
C2 |
C20 |
C3 |
237.6 |
244.0 |
| S1 |
C2 |
C20 |
C14 |
116.6 |
119.8 |
| C3 |
C2 |
C20 |
C14 |
239.0 |
235.8 |
| C20 |
C2 |
C3 |
N4 |
177.9 |
179.1 |
| C20 |
C2 |
C3 |
C9 |
302.0 |
300.0 |
| C20 |
C2 |
C3 |
H3 |
59.6 |
61.5 |
| C20 |
C2 |
C14 |
N15 |
300.5 |
298.9 |
| C20 |
C2 |
C14 |
H141 |
65.8 |
60.0 |
| C20 |
C2 |
C14 |
H142 |
175.1 |
177.3 |
| H201 |
C20 |
C2 |
H202 |
234.7 |
239.2 |
| H201 |
C20 |
C2 |
H203 |
125.3 |
120.6 |
| H202 |
C20 |
C2 |
H203 |
250.5 |
241.4 |
| S1 |
C2 |
C14 |
C3 |
121.6 |
118.7 |
| S1 |
C2 |
C14 |
C20 |
242.5 |
242.1 |
| C3 |
C2 |
C14 |
C20 |
121.0 |
123.3 |
| C14 |
C2 |
C3 |
N4 |
57.6 |
54.7 |
| C14 |
C2 |
C3 |
C9 |
181.7 |
175.6 |
| C14 |
C2 |
C3 |
H3 |
299.3 |
297.1 |
| C14 |
C2 |
C20 |
H201 |
63.4 |
305.6 |
| C14 |
C2 |
C20 |
H202 |
188.6 |
66.4 |
| C14 |
C2 |
C20 |
H203 |
298.1 |
185.0 |
| N15 |
C14 |
C2 |
H141 |
234.7 |
238.9 |
| N15 |
C14 |
C2 |
H142 |
125.3 |
121.6 |
| C2 |
C14 |
N15 |
N16 |
90.2 |
269.7 |
| C2 |
C14 |
N15 |
C19 |
268.5 |
90.0 |
| H141 |
C14 |
C2 |
H142 |
250.6 |
242.7 |
| N4 |
C3 |
C2 |
C20 |
177.9 |
179.1 |
| N4 |
C3 |
C2 |
C14 |
57.6 |
54.7 |
| C2 |
C3 |
N4 |
C9 |
125.5 |
124.8 |
| C2 |
C3 |
N4 |
H3 |
243.3 |
240.1 |
| C9 |
C3 |
N4 |
H3 |
117.8 |
115.3 |
| N4 |
C3 |
C9 |
O10 |
40.9 |
215.7 |
| N4 |
C3 |
C9 |
O11 |
220.7 |
35.9 |
| C5 |
N4 |
C3 |
HN4 |
125.3 |
180.0 |
| C3 |
N4 |
C5 |
C6 |
183.2 |
180.0 |
| C3 |
N4 |
C5 |
H5 |
3.2 |
0.0 |
| C9 |
C3 |
C2 |
C20 |
302.0 |
300.0 |
| C9 |
C3 |
C2 |
C14 |
181.7 |
175.6 |
| C2 |
C3 |
C9 |
N4 |
235.1 |
236.8 |
| C2 |
C3 |
C9 |
H3 |
116.6 |
122.6 |
| N4 |
C3 |
C9 |
H3 |
241.5 |
245.8 |
| C9 |
C3 |
N4 |
C5 |
82.0 |
55.3 |
| C9 |
C3 |
N4 |
HN4 |
316.7 |
235.3 |
| O10 |
C9 |
C3 |
O11 |
180.2 |
179.8 |
| C3 |
C9 |
O10 |
H10 |
179.9 |
180.1 |
| H3 |
C3 |
C2 |
C20 |
59.6 |
61.5 |
| H3 |
C3 |
C2 |
C14 |
299.3 |
297.1 |
| C2 |
C3 |
H3 |
N4 |
120.1 |
120.6 |
| C2 |
C3 |
H3 |
C9 |
239.3 |
235.2 |
| N4 |
C3 |
H3 |
C9 |
119.3 |
114.6 |
| H3 |
C3 |
N4 |
C5 |
324.2 |
300.0 |
| H3 |
C3 |
N4 |
HN4 |
198.8 |
120.0 |
| H3 |
C3 |
C9 |
O10 |
159.4 |
329.9 |
| H3 |
C3 |
C9 |
O11 |
339.2 |
150.0 |
| C5 |
N4 |
C3 |
C9 |
82.0 |
55.3 |
| C5 |
N4 |
C3 |
H3 |
324.2 |
300.0 |
| C3 |
N4 |
C5 |
HN4 |
234.7 |
180.0 |
| C6 |
C5 |
N4 |
H5 |
180.0 |
180.0 |
| N4 |
C5 |
C6 |
C7 |
359.8 |
360.0 |
| N4 |
C5 |
C6 |
H6 |
179.9 |
180.0 |
| HN4 |
N4 |
C3 |
C9 |
316.7 |
235.3 |
| HN4 |
N4 |
C3 |
H3 |
198.8 |
120.0 |
| C3 |
N4 |
HN4 |
C5 |
127.9 |
180.0 |
| HN4 |
N4 |
C5 |
C6 |
308.5 |
0.0 |
| HN4 |
N4 |
C5 |
H5 |
128.5 |
180.0 |
| C6 |
C5 |
N4 |
HN4 |
308.5 |
0.0 |
| N4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| C7 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
O8 |
25.4 |
180.0 |
| C5 |
C6 |
C7 |
H7 |
205.4 |
360.0 |
| H5 |
C5 |
N4 |
HN4 |
128.5 |
180.0 |
| N4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
C7 |
179.8 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
359.9 |
360.0 |
| H201 |
C20 |
C2 |
C14 |
63.4 |
305.6 |
| C2 |
C20 |
H201 |
H202 |
125.2 |
123.1 |
| C2 |
C20 |
H201 |
H203 |
234.8 |
237.6 |
| H202 |
C20 |
H201 |
H203 |
109.6 |
114.5 |
| H202 |
C20 |
C2 |
C14 |
188.6 |
66.4 |
| C2 |
C20 |
H202 |
H201 |
236.9 |
236.9 |
| C2 |
C20 |
H202 |
H203 |
118.4 |
121.3 |
| H201 |
C20 |
H202 |
H203 |
241.5 |
244.4 |
| H203 |
C20 |
C2 |
C14 |
298.1 |
185.0 |
| C2 |
C20 |
H203 |
H201 |
123.1 |
122.8 |
| C2 |
C20 |
H203 |
H202 |
241.6 |
238.2 |
| H201 |
C20 |
H203 |
H202 |
118.5 |
115.4 |
| C2 |
C14 |
N15 |
H141 |
125.3 |
123.4 |
| C2 |
C14 |
N15 |
H142 |
234.7 |
236.1 |
| H141 |
C14 |
N15 |
H142 |
109.4 |
112.7 |
| N16 |
N15 |
C14 |
C19 |
181.8 |
179.7 |
| C14 |
N15 |
N16 |
N17 |
178.6 |
180.2 |
| C14 |
N15 |
C19 |
C18 |
181.7 |
179.9 |
| C14 |
N15 |
C19 |
H19 |
1.7 |
359.9 |
| C2 |
C14 |
H141 |
N15 |
234.2 |
232.7 |
| C2 |
C14 |
H141 |
H142 |
117.1 |
120.0 |
| N15 |
C14 |
H141 |
H142 |
242.9 |
247.3 |
| H141 |
C14 |
N15 |
N16 |
324.9 |
146.4 |
| H141 |
C14 |
N15 |
C19 |
143.2 |
326.6 |
| C2 |
C14 |
H142 |
N15 |
125.8 |
127.6 |
| C2 |
C14 |
H142 |
H141 |
242.9 |
240.2 |
| N15 |
C14 |
H142 |
H141 |
117.1 |
112.5 |
| H142 |
C14 |
N15 |
N16 |
215.6 |
33.7 |
| H142 |
C14 |
N15 |
C19 |
33.8 |
214.0 |
| N16 |
N15 |
C14 |
H141 |
324.9 |
146.4 |
| N16 |
N15 |
C14 |
H142 |
215.6 |
33.7 |
| C14 |
N15 |
N16 |
C19 |
178.5 |
180.3 |
| N16 |
N15 |
C19 |
C18 |
360.0 |
0.1 |
| N16 |
N15 |
C19 |
H19 |
180.0 |
180.1 |
| N15 |
N16 |
N17 |
C18 |
360.0 |
360.0 |
| C19 |
N15 |
C14 |
H141 |
143.2 |
326.6 |
| C19 |
N15 |
C14 |
H142 |
33.8 |
214.0 |
| C14 |
N15 |
C19 |
N16 |
181.7 |
179.7 |
| C19 |
N15 |
N16 |
N17 |
0.0 |
359.9 |
| N17 |
C18 |
C19 |
N15 |
360.0 |
359.9 |
| N15 |
C19 |
C18 |
H18 |
180.0 |
180.1 |
| C18 |
C19 |
N15 |
H19 |
180.0 |
180.0 |
| N17 |
N16 |
N15 |
C19 |
0.0 |
359.9 |
| N16 |
N17 |
C18 |
C19 |
0.0 |
0.1 |
| N16 |
N17 |
C18 |
H18 |
180.0 |
179.9 |
| N15 |
C19 |
C18 |
N17 |
360.0 |
359.9 |
| C19 |
C18 |
N17 |
H18 |
180.0 |
180.2 |
| N17 |
C18 |
C19 |
H19 |
180.0 |
179.9 |
| N15 |
C19 |
C18 |
H19 |
180.0 |
180.0 |
| N17 |
C18 |
C19 |
H18 |
180.0 |
179.8 |
| N17 |
C18 |
H18 |
C19 |
180.0 |
180.2 |
| H18 |
C18 |
C19 |
H19 |
360.0 |
0.1 |
| N15 |
C19 |
H19 |
C18 |
180.0 |
180.0 |
| H19 |
C19 |
C18 |
H18 |
360.0 |
0.1 |
| O10 |
C9 |
C3 |
H3 |
159.4 |
329.9 |
| C3 |
C9 |
O10 |
O11 |
179.8 |
180.1 |
| O11 |
C9 |
C3 |
H3 |
339.2 |
150.0 |
| C3 |
C9 |
O11 |
O10 |
180.2 |
179.8 |
| O11 |
C9 |
O10 |
H10 |
0.2 |
360.0 |
| H10 |
O10 |
C9 |
O11 |
0.2 |
360.0 |
| C7 |
C6 |
C5 |
H5 |
179.8 |
180.0 |
| C5 |
C6 |
C7 |
H6 |
180.0 |
180.0 |
| O8 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
359.9 |
360.0 |
| C5 |
C6 |
H6 |
C7 |
180.0 |
180.0 |
| H6 |
C6 |
C7 |
O8 |
205.4 |
0.0 |
| H6 |
C6 |
C7 |
H7 |
25.4 |
180.0 |
| O8 |
C7 |
C6 |
H6 |
205.4 |
0.0 |
| C6 |
C7 |
O8 |
H7 |
180.0 |
180.0 |
| H7 |
C7 |
C6 |
H6 |
25.4 |
180.0 |
| C6 |
C7 |
H7 |
O8 |
180.0 |
180.0 |