PDB Chemical Component TB9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TB9

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C1A 1.399 1.390
N1 C2 1.445 1.350
N1 HN1 1.021 0.970
C1A C3A 1.387 1.399
C1A C10 1.379 1.388
C2 S2 1.771 1.712
C2 N3 1.477 1.328
N3 C3A 1.422 1.427
N3 C4 1.455 1.455
C3A C7A 1.436 1.363
C4 C5 1.534 1.502
C4 H41 1.114 1.089
C4 H42 1.116 1.090
C5 N6 1.479 1.427
C5 C11 1.504 1.531
C5 H5 1.115 1.090
N6 C7 1.458 1.450
N6 C12 1.472 1.469
C7 C7A 1.537 1.512
C7 H71 1.115 1.090
C7 H72 1.114 1.089
C7A C8 1.452 1.398
C8 C9 1.479 1.380
C8 H8 1.102 1.079
CL9 C9 1.758 1.737
C9 C10 1.434 1.382
C10 H10 1.104 1.080
C11 H111 1.115 1.090
C11 H112 1.115 1.088
C11 H113 1.116 1.090
C12 C13 1.456 1.507
C12 H121 1.114 1.090
C12 H122 1.115 1.090
C13 C14 1.340 1.309
C13 H13 1.103 1.079
C14 C15 1.557 1.506
C14 C16 1.551 1.507
C15 H151 1.115 1.089
C15 H152 1.116 1.090
C15 H153 1.115 1.090
C16 H161 1.115 1.090
C16 H162 1.114 1.090
C16 H163 1.115 1.091

Bond Angles for TB9

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1A N1 C2 108.7 108.0
C1A N1 HN1 112.5 126.1
N1 C1A C3A 107.5 107.6
N1 C1A C10 132.8 132.9
C2 N1 HN1 112.5 126.0
N1 C2 S2 124.1 125.9
N1 C2 N3 107.5 108.3
C3A C1A C10 119.7 119.4
C1A C3A N3 112.7 103.8
C1A C3A C7A 125.7 121.1
C1A C10 C9 119.8 119.0
C1A C10 H10 118.1 120.5
S2 C2 N3 128.4 125.9
C2 N3 C3A 103.7 108.3
C2 N3 C4 123.6 131.5
C3A N3 C4 131.4 119.9
N3 C3A C7A 121.6 134.9
N3 C4 C5 118.0 110.8
N3 C4 H41 109.1 109.2
N3 C4 H42 109.1 109.2
C3A C7A C7 124.6 126.6
C3A C7A C8 115.4 118.3
C5 C4 H41 109.2 109.2
C5 C4 H42 109.1 109.2
C4 C5 N6 120.8 113.6
C4 C5 C11 101.4 108.6
C4 C5 H5 106.4 108.7
H41 C4 H42 101.0 109.2
N6 C5 C11 105.2 108.7
N6 C5 H5 102.8 108.7
C5 N6 C7 118.7 112.6
C5 N6 C12 119.5 106.6
C11 C5 H5 121.6 108.6
C5 C11 H111 101.5 109.4
C5 C11 H112 115.3 109.5
C5 C11 H113 115.2 109.4
C7 N6 C12 121.0 106.7
N6 C7 C7A 119.9 112.4
N6 C7 H71 108.4 109.0
N6 C7 H72 108.4 108.9
N6 C12 C13 106.0 109.5
N6 C12 H121 113.5 109.5
N6 C12 H122 113.5 109.5
C7A C7 H71 108.5 108.9
C7A C7 H72 108.5 108.9
C7 C7A C8 119.6 115.1
H71 C7 H72 101.6 108.7
C7A C8 C9 118.7 120.8
C7A C8 H8 119.7 119.6
C9 C8 H8 121.6 119.6
C8 C9 CL9 121.1 119.8
C8 C9 C10 120.7 120.5
CL9 C9 C10 118.0 119.7
C9 C10 H10 122.0 120.5
H111 C11 H112 115.4 109.5
H111 C11 H113 115.2 109.5
H112 C11 H113 95.2 109.5
C13 C12 H121 113.5 109.4
C13 C12 H122 113.5 109.5
C12 C13 C14 129.8 120.0
C12 C13 H13 120.2 120.0
H121 C12 H122 97.0 109.4
C14 C13 H13 110.1 120.0
C13 C14 C15 107.6 120.1
C13 C14 C16 117.0 120.0
C15 C14 C16 135.3 119.9
C14 C15 H151 107.7 109.6
C14 C15 H152 112.9 109.5
C14 C15 H153 112.9 109.5
C14 C16 H161 117.0 109.5
C14 C16 H162 109.5 109.6
C14 C16 H163 109.5 109.4
H151 C15 H152 112.9 109.5
H151 C15 H153 112.9 109.4
H152 C15 H153 97.5 109.4
H161 C16 H162 109.5 109.4
H161 C16 H163 109.5 109.5
H162 C16 H163 100.7 109.4

Torsion Angles for TB9

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C1A HN1 125.2 180.1
C1A N1 C2 S2 179.0 196.1
C1A N1 C2 N3 359.9 16.1
C3A C1A N1 C10 181.3 179.1
N1 C1A C3A N3 359.9 352.7
N1 C1A C3A C7A 178.9 169.2
N1 C1A C10 C9 181.4 185.4
N1 C1A C10 H10 1.4 5.4
C1A N1 C2 HN1 234.7 179.9
C2 N1 C1A C3A 0.1 355.2
C2 N1 C1A C10 178.8 176.1
S2 C2 N1 N3 179.1 180.1
N1 C2 N3 C3A 0.0 339.1
N1 C2 N3 C4 168.3 152.6
C1A N1 HN1 C2 123.1 180.1
HN1 N1 C1A C3A 234.9 175.1
HN1 N1 C1A C10 53.6 356.0
HN1 N1 C2 S2 304.3 16.2
HN1 N1 C2 N3 125.2 196.1
C3A C1A N1 C2 0.1 355.2
C3A C1A N1 HN1 234.9 175.1
N1 C1A C3A C10 178.9 180.7
C3A C1A C10 C9 360.0 6.4
C3A C1A C10 H10 180.0 186.4
C2 N3 C3A C1A 0.0 17.3
C1A C3A N3 C4 193.1 202.8
N3 C3A C1A C7A 181.0 183.5
C1A C3A C7A C7 172.8 189.0
C1A C3A C7A C8 0.1 9.2
C10 C1A N1 C2 178.8 176.1
C10 C1A N1 HN1 53.6 356.0
N1 C1A C10 C3A 181.4 179.0
C10 C1A C3A N3 181.0 172.0
C10 C1A C3A C7A 360.0 348.5
C8 C9 C10 C1A 360.0 0.6
CL9 C9 C10 C1A 185.0 180.5
C9 C10 C1A H10 180.0 180.0
S2 C2 N1 HN1 304.3 16.2
N1 C2 S2 N3 181.1 179.9
S2 C2 N3 C3A 181.0 159.0
S2 C2 N3 C4 349.3 332.6
N3 C2 N1 HN1 125.2 196.1
N1 C2 N3 S2 179.1 180.1
C1A C3A N3 C2 0.0 17.3
C3A N3 C2 C4 191.7 186.5
C2 N3 C3A C7A 181.0 201.5
C2 N3 C4 C5 141.4 136.1
C2 N3 C4 H41 266.7 15.7
C2 N3 C4 H42 16.1 256.4
N3 C3A C1A C10 181.0 172.0
C1A C3A N3 C7A 179.0 175.7
C2 N3 C3A C4 167.0 174.4
C3A N3 C4 C5 306.1 309.0
C3A N3 C4 H41 71.4 188.7
C3A N3 C4 H42 180.9 69.3
N3 C3A C7A C7 351.7 4.2
N3 C3A C7A C8 179.0 184.4
C2 N3 C4 C3A 195.2 187.1
C4 N3 C3A C7A 14.0 27.1
C5 C4 N3 H41 234.7 120.3
C5 C4 N3 H42 125.3 239.7
N3 C4 C5 N6 48.9 80.3
N3 C4 C5 C11 164.5 201.3
N3 C4 C5 H5 292.6 319.3
H41 C4 N3 H42 250.6 119.3
C7A C3A C1A C10 360.0 348.5
C1A C3A C7A N3 181.1 184.8
C7A C3A N3 C4 14.0 27.1
N6 C7 C7A C3A 52.9 323.5
C3A C7A C7 H71 287.7 84.4
C3A C7A C7 H72 178.1 202.8
C7 C7A C3A C8 172.6 179.8
C3A C7A C8 C9 359.8 358.0
C3A C7A C8 H8 179.8 177.9
N3 C4 C5 H41 125.3 239.7
N3 C4 C5 H42 234.8 120.3
H41 C4 C5 H42 109.5 240.6
N6 C5 C4 C11 244.4 239.0
N6 C5 C4 H5 116.3 121.0
C4 C5 N6 C7 11.5 266.7
C4 C5 N6 C12 201.8 150.0
C11 C5 C4 H5 231.9 242.0
C4 C5 C11 H111 180.0 51.6
C4 C5 C11 H112 305.3 171.6
C4 C5 C11 H113 54.7 291.6
N3 C4 H41 C5 229.7 121.3
N3 C4 H41 H42 114.8 240.7
C5 C4 H41 H42 245.1 119.4
H41 C4 C5 N6 283.6 200.6
H41 C4 C5 C11 39.2 321.6
H41 C4 C5 H5 167.4 79.6
N3 C4 H42 C5 130.3 238.7
N3 C4 H42 H41 245.2 119.3
C5 C4 H42 H41 114.9 240.6
H42 C4 C5 N6 174.2 320.0
H42 C4 C5 C11 289.7 81.0
H42 C4 C5 H5 57.9 199.0
N6 C5 C4 H41 283.6 200.6
N6 C5 C4 H42 174.2 320.0
C4 C5 N6 C11 113.7 121.0
C4 C5 N6 H5 241.9 239.0
C11 C5 N6 H5 128.2 118.0
N6 C5 C11 H111 306.5 175.5
N6 C5 C11 H112 71.9 295.6
N6 C5 C11 H113 181.3 55.6
C7 N6 C5 C12 169.7 116.7
C5 N6 C7 C7A 293.7 68.3
C5 N6 C7 H71 59.0 307.5
C5 N6 C7 H72 168.5 189.0
C5 N6 C12 C13 95.8 175.4
C5 N6 C12 H121 221.1 295.3
C5 N6 C12 H122 330.6 55.3
C11 C5 C4 H41 39.2 321.6
C11 C5 C4 H42 289.7 81.0
C4 C5 C11 N6 233.4 236.0
C4 C5 C11 H5 117.6 118.0
N6 C5 C11 H5 244.2 242.0
C11 C5 N6 C7 257.8 145.7
C11 C5 N6 C12 88.1 29.0
H111 C11 C5 H112 234.6 239.9
H111 C11 C5 H113 125.2 119.9
H112 C11 C5 H113 250.6 240.0
H5 C5 C4 H41 167.4 79.6
H5 C5 C4 H42 57.9 199.0
C4 C5 H5 N6 127.8 124.0
C4 C5 H5 C11 244.9 242.0
N6 C5 H5 C11 117.1 118.0
H5 C5 N6 C7 129.6 27.7
H5 C5 N6 C12 319.9 271.0
H5 C5 C11 H111 62.4 293.6
H5 C5 C11 H112 187.7 53.6
H5 C5 C11 H113 297.2 173.6
C3A C7A C7 N6 52.9 323.5
C7 N6 C5 C11 257.8 145.7
C7 N6 C5 H5 129.6 27.7
C5 N6 C7 C12 190.5 243.4
C7 N6 C12 C13 286.4 54.8
C7 N6 C12 H121 51.6 174.8
C7 N6 C12 H122 161.2 294.7
C7A C7 N6 H71 234.8 120.8
C7A C7 N6 H72 125.2 239.3
N6 C7 C7A C8 225.3 143.3
H71 C7 N6 H72 250.5 118.5
C12 N6 C5 C11 88.1 29.0
C12 N6 C5 H5 319.9 271.0
C5 N6 C12 C7 169.4 120.6
C12 N6 C7 C7A 103.2 184.9
C12 N6 C7 H71 228.5 64.1
C12 N6 C7 H72 338.0 305.6
C13 C12 N6 H121 234.7 240.0
C13 C12 N6 H122 125.2 120.1
N6 C12 C13 C14 160.2 231.8
N6 C12 C13 H13 340.2 51.7
H121 C12 N6 H122 250.5 240.1
C3A C7A C7 C8 187.7 180.2
C7A C7 N6 C12 103.2 184.9
N6 C7 C7A H71 125.2 239.1
N6 C7 C7A H72 234.8 120.7
H71 C7 C7A H72 109.5 241.6
C7 C7A C8 C9 186.8 178.1
C7 C7A C8 H8 6.8 358.1
H71 C7 N6 C12 228.5 64.1
N6 C7 H71 C7A 228.3 122.9
N6 C7 H71 H72 114.1 241.4
C7A C7 H71 H72 245.9 118.5
H71 C7 C7A C8 100.0 264.2
H72 C7 N6 C12 338.0 305.6
N6 C7 H72 C7A 131.7 237.2
N6 C7 H72 H71 245.9 118.7
C7A C7 H72 H71 114.2 241.5
H72 C7 C7A C8 350.5 22.6
C3A C7A C8 C7 173.0 179.8
C8 C7A C7 H71 100.0 264.2
C8 C7A C7 H72 350.5 22.6
C9 C8 C7A H8 180.0 180.0
C7A C8 C9 CL9 175.0 177.2
C7A C8 C9 C10 0.2 357.1
C1A C10 C9 C8 360.0 0.6
C7A C8 C9 H8 180.0 180.0
CL9 C9 C8 C10 174.8 180.1
C8 C9 C10 H10 179.9 180.6
C7A C8 H8 C9 180.0 180.0
H8 C8 C9 CL9 355.0 357.3
H8 C8 C9 C10 180.1 177.2
C1A C10 C9 CL9 185.0 180.5
CL9 C9 C8 H8 355.0 357.3
C8 C9 CL9 C10 185.1 179.9
CL9 C9 C10 H10 5.0 0.5
C1A C10 C9 H10 180.0 180.0
C10 C9 C8 H8 180.1 177.2
C8 C9 C10 CL9 175.0 180.1
C1A C10 H10 C9 180.0 180.0
H111 C11 C5 H5 62.4 293.6
C5 C11 H111 H112 125.3 120.1
C5 C11 H111 H113 234.8 240.1
H112 C11 H111 H113 109.5 120.0
H112 C11 C5 H5 187.7 53.6
C5 C11 H112 H111 242.2 240.0
C5 C11 H112 H113 121.1 119.9
H111 C11 H112 H113 238.9 239.9
H113 C11 C5 H5 297.2 173.6
C5 C11 H113 H111 117.7 119.9
C5 C11 H113 H112 238.9 240.0
H111 C11 H113 H112 121.2 120.1
N6 C12 C13 H121 125.3 120.0
N6 C12 C13 H122 234.8 239.9
H121 C12 C13 H122 109.5 119.9
C14 C13 C12 H13 180.0 180.1
C12 C13 C14 C15 177.0 172.6
C12 C13 C14 C16 359.1 352.6
N6 C12 H121 C13 238.8 240.0
N6 C12 H121 H122 119.4 120.0
C13 C12 H121 H122 240.6 240.0
H121 C12 C13 C14 34.9 111.8
H121 C12 C13 H13 214.9 291.7
N6 C12 H122 C13 121.1 120.1
N6 C12 H122 H121 240.5 240.0
C13 C12 H122 H121 119.4 119.9
H122 C12 C13 C14 285.5 351.9
H122 C12 C13 H13 105.5 171.8
C14 C13 C12 H121 34.9 111.8
C14 C13 C12 H122 285.5 351.9
C12 C13 C14 H13 180.0 179.9
C15 C14 C13 C16 178.0 179.9
C13 C14 C15 H151 180.0 180.0
C13 C14 C15 H152 305.3 300.1
C13 C14 C15 H153 54.7 60.0
C13 C14 C16 H161 180.0 5.2
C13 C14 C16 H162 305.3 125.3
C13 C14 C16 H163 54.7 245.2
H13 C13 C12 H121 214.9 291.7
H13 C13 C12 H122 105.5 171.8
C12 C13 H13 C14 180.0 180.1
H13 C13 C14 C15 357.0 352.6
H13 C13 C14 C16 179.1 172.7
C15 C14 C13 H13 357.0 352.6
C13 C14 C15 C16 182.6 180.1
C15 C14 C16 H161 2.8 185.3
C15 C14 C16 H162 128.0 305.3
C15 C14 C16 H163 237.5 65.3
H151 C15 C14 H152 234.7 239.9
H151 C15 C14 H153 125.3 119.9
H152 C15 C14 H153 250.6 240.1
C16 C14 C13 H13 179.1 172.7
C13 C14 C16 C15 177.2 179.9
C16 C14 C15 H151 357.4 359.9
C16 C14 C15 H152 122.7 120.0
C16 C14 C15 H153 232.1 240.0
H161 C16 C14 H162 234.7 240.0
H161 C16 C14 H163 125.2 120.0
H162 C16 C14 H163 250.5 240.0
H151 C15 C14 C16 357.4 359.9
C14 C15 H151 H152 125.3 120.1
C14 C15 H151 H153 234.7 240.0
H152 C15 H151 H153 109.4 119.9
H152 C15 C14 C16 122.7 120.0
C14 C15 H152 H151 237.6 239.9
C14 C15 H152 H153 118.8 120.0
H151 C15 H152 H153 241.2 240.1
H153 C15 C14 C16 232.1 240.0
C14 C15 H153 H151 122.4 120.0
C14 C15 H153 H152 241.2 240.0
H151 C15 H153 H152 118.8 120.0
C14 C16 H161 H162 125.3 120.1
C14 C16 H161 H163 234.8 240.0
H162 C16 H161 H163 109.5 119.9
C14 C16 H162 H161 230.5 240.0
C14 C16 H162 H163 115.2 120.0
H161 C16 H162 H163 244.7 240.0
C14 C16 H163 H161 129.4 120.0
C14 C16 H163 H162 244.7 239.9
H161 C16 H163 H162 115.3 119.9