PDB Chemical Component TAK

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for TAK

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.554	1.530
C1	N1	1.499	1.469
C2	C3	1.555	1.531
C3	C4	1.571	1.531
C4	C5	1.564	1.531
C5	N1	1.490	1.469
N1	C6	1.468	1.469
C6	C7	1.524	1.530
C7	O1	1.444	1.429
O1	C8	1.386	1.359
C8	C9	1.448	1.388
C8	C11	1.430	1.388
C9	C10	1.426	1.380
C10	C13	1.452	1.393
C11	C12	1.425	1.379
C12	C13	1.465	1.395
C13	C14	1.447	1.484
C14	C15	1.427	1.367
C14	C16	1.438	1.411
C15	N3	1.424	1.365
C16	N2	1.344	1.312
N2	C17	1.372	1.337
C17	N3	1.417	1.370
C17	C19	1.404	1.402
N3	N4	1.232	1.400
N4	C18	1.341	1.311
C18	C19	1.357	1.400
C19	C20	1.442	1.480
C20	C21	1.449	1.400
C20	C24	1.446	1.400
C21	C22	1.425	1.379
C22	N5	1.366	1.320
N5	C23	1.368	1.320
C23	C24	1.426	1.378
C1	H1	1.100	1.090
C1	H1A	1.100	1.090
C2	H2	1.100	1.091
C2	H2A	1.100	1.090
C3	H3	1.099	1.090
C3	H3A	1.100	1.090
C4	H4	1.100	1.089
C4	H4A	1.100	1.090
C5	H5	1.100	1.090
C5	H5A	1.100	1.090
C6	H6	1.100	1.090
C6	H6A	1.100	1.090
C7	H7	1.100	1.090
C7	H7A	1.100	1.090
C9	H9	1.080	1.080
C10	H10	1.079	1.080
C11	H11	1.080	1.081
C12	H12	1.080	1.080
C15	H15	1.080	1.080
C16	H16	1.080	1.080
C18	H18	1.080	1.080
C21	H21	1.080	1.080
C22	H22	1.080	1.079
C23	H23	1.080	1.080
C24	H24	1.080	1.080

Bond Angles for TAK

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	N1	114.1	109.5
C1	C2	C3	112.3	109.3
C2	C1	H1	107.9	109.5
C2	C1	H1A	106.9	109.5
C1	C2	H2	108.5	109.5
C1	C2	H2A	107.9	109.5
C1	N1	C5	115.2	111.2
C1	N1	C6	110.6	111.0
N1	C1	H1	108.0	109.5
N1	C1	H1A	106.9	109.4
C2	C3	C4	113.5	109.2
C3	C2	H2	108.6	109.5
C3	C2	H2A	107.9	109.5
C2	C3	H3	108.1	109.6
C2	C3	H3A	107.2	109.5
C3	C4	C5	114.5	109.3
C4	C3	H3	108.1	109.6
C4	C3	H3A	107.2	109.5
C3	C4	H4	107.8	109.5
C3	C4	H4A	106.7	109.5
C4	C5	N1	111.0	109.5
C5	C4	H4	107.8	109.5
C5	C4	H4A	106.7	109.5
C4	C5	H5	109.0	109.4
C4	C5	H5A	108.6	109.5
C5	N1	C6	109.0	111.0
N1	C5	H5	109.0	109.5
N1	C5	H5A	108.6	109.5
N1	C6	C7	109.4	109.5
N1	C6	H6	109.5	109.5
N1	C6	H6A	109.5	109.5
C6	C7	O1	111.1	109.5
C7	C6	H6	109.5	109.5
C7	C6	H6A	109.5	109.5
C6	C7	H7	108.9	109.4
C6	C7	H7A	108.6	109.5
C7	O1	C8	117.6	117.0
O1	C7	H7	108.9	109.5
O1	C7	H7A	108.6	109.5
O1	C8	C9	123.4	120.0
O1	C8	C11	115.8	119.9
C9	C8	C11	120.8	120.1
C8	C9	C10	119.4	120.1
C8	C9	H9	120.3	119.9
C8	C11	C12	119.3	120.1
C8	C11	H11	120.4	120.0
C9	C10	C13	121.5	120.0
C10	C9	H9	120.3	120.0
C9	C10	H10	119.2	120.0
C10	C13	C12	117.2	119.8
C10	C13	C14	121.6	120.1
C13	C10	H10	119.3	120.0
C11	C12	C13	121.7	119.9
C12	C11	H11	120.3	119.9
C11	C12	H12	119.1	120.1
C12	C13	C14	121.2	120.1
C13	C12	H12	119.1	120.0
C13	C14	C15	123.0	120.4
C13	C14	C16	122.4	120.4
C15	C14	C16	114.6	119.2
C14	C15	N3	121.9	119.0
C14	C15	H15	119.1	120.5
C14	C16	N2	123.1	120.1
C14	C16	H16	118.4	120.0
C15	N3	C17	119.1	119.8
C15	N3	N4	132.0	132.2
N3	C15	H15	119.1	120.5
C16	N2	C17	122.5	121.0
N2	C16	H16	118.5	120.0
N2	C17	N3	118.9	120.9
N2	C17	C19	134.8	132.4
N3	C17	C19	106.3	106.7
C17	N3	N4	108.9	108.0
C17	C19	C18	103.5	107.2
C17	C19	C20	127.3	126.4
N3	N4	C18	110.8	109.2
N4	C18	C19	110.5	108.9
N4	C18	H18	124.7	125.5
C18	C19	C20	129.2	126.4
C19	C18	H18	124.7	125.6
C19	C20	C21	119.9	120.9
C19	C20	C24	121.4	121.0
C21	C20	C24	118.7	118.2
C20	C21	C22	119.4	119.0
C20	C21	H21	120.3	120.5
C20	C24	C23	119.5	119.0
C20	C24	H24	120.2	120.5
C21	C22	N5	118.5	120.9
C22	C21	H21	120.3	120.5
C21	C22	H22	120.8	119.5
C22	N5	C23	125.6	122.1
N5	C22	H22	120.7	119.6
N5	C23	C24	118.3	120.9
N5	C23	H23	120.9	119.6
C24	C23	H23	120.8	119.6
C23	C24	H24	120.2	120.5
H1	C1	H1A	113.2	109.5
H2	C2	H2A	111.7	109.6
H3	C3	H3A	112.7	109.5
H4	C4	H4A	113.5	109.6
H5	C5	H5A	110.7	109.5
H6	C6	H6A	109.4	109.4
H7	C7	H7A	110.8	109.5

Torsion Angles for TAK

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	N1	C5	309.1	298.2
C2	C1	N1	C6	185.0	174.1
N1	C1	C2	H1	240.0	240.0
N1	C1	C2	H1A	118.0	120.0
C1	C2	C3	C4	46.2	302.3
C3	C2	C1	H2	240.0	240.1
C3	C2	C1	H2A	118.8	120.0
C1	C2	C3	H3	166.2	62.3
C1	C2	C3	H3A	288.0	182.4
H1	C1	C2	H1A	238.0	240.0
H2	C2	C1	H2A	238.8	239.8
N1	C1	C2	C3	358.1	59.2
C2	C1	N1	H1	120.0	120.0
C2	C1	N1	H1A	242.1	240.0
N1	C1	C2	H2	118.1	179.1
N1	C1	C2	H2A	239.3	299.2
C4	C5	N1	C1	55.4	61.7
C5	N1	C1	C6	124.1	124.1
C1	N1	C5	H5	295.4	301.8
C1	N1	C5	H5A	174.8	181.7
C1	N1	C6	C7	220.9	190.0
C1	N1	C6	H6	340.9	310.0
C1	N1	C6	H6A	100.8	70.0
H1	C1	N1	H1A	122.1	119.9
C3	C2	C1	N1	358.1	59.2
C3	C2	C1	H1	118.1	179.2
C3	C2	C1	H1A	240.1	299.2
C1	C2	C3	H2	120.0	119.9
C1	C2	C3	H2A	241.2	240.0
C2	C3	C4	C5	318.5	57.7
C4	C3	C2	H3	240.0	240.0
C4	C3	C2	H3A	118.2	119.9
C2	C3	C4	H4	78.5	177.6
C2	C3	C4	H4A	200.7	297.8
H2	C2	C3	H2A	121.2	120.2
H3	C3	C2	H3A	238.2	239.9
C4	C3	C2	H2	286.2	182.4
C4	C3	C2	H2A	165.0	62.3
C2	C3	C4	H3	120.0	120.0
C2	C3	C4	H3A	241.8	240.1
C3	C4	C5	N1	352.0	300.8
C5	C4	C3	H4	240.0	240.1
C5	C4	C3	H4A	117.8	119.9
C3	C4	C5	H5	112.0	60.8
C3	C4	C5	H5A	232.6	180.8
H3	C3	C4	H3A	121.8	120.2
H4	C4	C3	H4A	237.8	239.8
C1	N1	C5	C4	55.4	61.7
C5	C4	C3	H3	198.5	297.7
C5	C4	C3	H3A	76.7	177.5
C3	C4	C5	H4	120.0	119.9
C3	C4	C5	H4A	242.2	240.1
C4	C5	N1	C6	180.3	185.8
N1	C5	C4	H5	240.0	240.0
N1	C5	C4	H5A	119.4	120.0
H4	C4	C5	H4A	122.2	120.1
H5	C5	C4	H5A	239.4	240.0
C1	N1	C5	C6	235.0	235.9
C5	N1	C1	H1	189.1	178.2
C5	N1	C1	H1A	67.0	58.2
N1	C5	C4	H4	232.0	180.9
N1	C5	C4	H4A	109.7	60.8
C4	C5	N1	H5	120.0	120.0
C4	C5	N1	H5A	240.6	240.0
C5	N1	C6	C7	93.3	65.8
C5	N1	C6	H6	213.3	185.8
C5	N1	C6	H6A	333.2	305.8
H5	C5	N1	H5A	120.6	120.0
C1	N1	C6	C5	127.6	124.2
C6	N1	C1	H1	65.0	54.1
C6	N1	C1	H1A	302.9	294.2
C6	N1	C5	H5	60.3	65.8
C6	N1	C5	H5A	299.7	305.8
N1	C6	C7	O1	178.7	65.0
C7	C6	N1	H6	240.0	240.0
C7	C6	N1	H6A	120.1	120.0
N1	C6	C7	H7	298.7	185.0
N1	C6	C7	H7A	59.4	305.0
H6	C6	N1	H6A	240.0	240.0
N1	C6	C7	H6	120.0	120.0
N1	C6	C7	H6A	240.0	240.0
C6	C7	O1	C8	238.5	180.0
O1	C7	C6	H7	240.0	240.0
O1	C7	C6	H7A	119.3	120.0
H6	C6	C7	H6A	120.0	120.0
H7	C7	C6	H7A	239.3	240.1
O1	C7	C6	H6	58.7	305.0
O1	C7	C6	H6A	298.7	185.1
C6	C7	O1	H7	120.0	120.0
C6	C7	O1	H7A	240.7	240.0
C7	O1	C8	C9	313.5	180.0
C7	O1	C8	C11	133.3	359.7
H7	C7	O1	H7A	120.7	120.0
C8	O1	C7	H7	118.6	60.0
C8	O1	C7	H7A	357.8	300.0
C9	C8	O1	C11	180.2	180.3
O1	C8	C9	C10	179.7	180.0
O1	C8	C9	H9	359.7	359.9
O1	C8	C11	C12	180.2	180.1
O1	C8	C11	H11	0.2	360.0
O1	C8	C9	C11	179.8	179.7
C9	C8	C11	C12	360.0	359.8
C9	C8	C11	H11	180.0	179.7
C8	C9	C10	C13	0.2	359.9
C10	C9	C8	H9	180.0	180.1
C8	C9	C10	H10	180.2	180.0
O1	C8	C11	C9	180.2	180.3
C11	C8	C9	C10	359.9	0.3
C11	C8	C9	H9	179.9	180.2
C8	C11	C12	C13	0.0	359.9
C12	C11	C8	H11	180.0	180.1
C8	C11	C12	H12	180.0	180.0
C10	C9	C8	C11	359.9	0.3
C8	C9	C10	H9	180.0	179.9
C9	C10	C13	C12	359.8	359.8
C9	C10	C13	C14	180.5	180.0
C13	C10	C9	H10	180.0	180.0
C13	C10	C9	H9	180.2	180.1
C9	C10	C13	H10	180.0	180.0
C11	C12	C13	C10	0.1	0.3
C12	C13	C10	C14	179.3	179.8
C10	C13	C12	H12	180.1	180.2
C10	C13	C14	C15	174.7	115.0
C10	C13	C14	C16	355.3	294.8
C8	C11	C12	H11	180.0	179.9
C10	C13	C12	C11	0.1	0.3
C11	C12	C13	C14	179.4	180.1
C13	C12	C11	H12	180.0	179.9
C10	C13	C12	C14	180.7	180.2
C12	C13	C10	H10	179.8	179.7
C13	C12	C11	H11	180.0	180.0
C11	C12	C13	H12	180.0	180.1
C12	C13	C14	C15	355.4	295.2
C12	C13	C14	C16	176.0	115.0
C10	C13	C14	C12	179.3	179.8
C14	C13	C10	H10	0.5	360.0
C14	C13	C12	H12	359.4	360.0
C15	C14	C13	C16	179.4	180.2
C13	C14	C15	N3	180.8	180.0
C13	C14	C15	H15	0.8	0.1
C13	C14	C16	N2	179.2	180.0
C13	C14	C16	H16	359.2	0.0
C13	C14	C15	C16	180.6	179.8
C15	C14	C16	N2	359.7	359.8
C15	C14	C16	H16	179.7	179.8
C14	C15	N3	C17	0.0	0.0
C14	C15	N3	N4	179.8	180.0
N3	C15	C14	H15	180.0	179.9
C13	C14	C16	C15	179.4	180.2
C16	C14	C15	N3	0.2	0.2
C16	C14	C15	H15	180.2	180.3
C14	C16	N2	C17	0.1	0.0
N2	C16	C14	H16	180.0	180.0
N3	C15	C14	C16	0.2	0.2
C14	C15	N3	H15	180.0	180.1
N2	C17	N3	C15	359.8	359.7
C15	N3	C17	C19	179.6	179.9
C17	N3	C15	N4	180.2	180.0
C15	N3	N4	C18	180.3	180.1
C14	C16	N2	H16	180.0	180.0
C16	N2	C17	N3	0.2	0.2
C16	N2	C17	C19	180.5	180.0
C15	N3	C17	N2	359.8	359.7
C17	N2	C16	H16	180.1	180.0
N3	C17	N2	C19	179.7	180.2
N2	C17	N3	N4	179.9	179.8
N2	C17	C19	C18	180.0	180.3
N2	C17	C19	C20	0.2	359.9
C15	N3	C17	N4	179.8	180.0
C17	N3	C15	H15	180.0	179.9
N2	C17	N3	C19	180.2	179.8
N3	C17	C19	C18	0.3	0.1
N3	C17	C19	C20	180.5	179.7
C17	N3	N4	C18	0.1	0.0
N2	C17	C19	N3	179.7	180.2
C19	C17	N3	N4	359.7	359.9
N4	C18	C19	C17	359.8	359.9
C18	C19	C17	C20	179.8	180.4
C17	C19	C18	H18	179.8	179.9
C17	C19	C20	C21	179.9	130.0
C17	C19	C20	C24	0.4	309.8
C15	N3	N4	C17	180.2	180.0
N4	N3	C15	H15	359.8	359.9
N4	N3	C17	C19	359.7	359.9
N3	N4	C18	C19	0.1	0.0
N3	N4	C18	H18	180.0	180.1
C17	C19	C18	N4	359.8	359.9
N4	C18	C19	C20	179.5	180.3
C19	C18	N4	H18	180.0	180.0
C17	C19	C18	C20	180.2	179.6
N4	C18	C19	H18	180.0	180.0
C18	C19	C20	C21	0.2	309.6
C18	C19	C20	C24	180.7	129.3
C17	C19	C20	C18	179.7	180.4
C20	C19	C18	H18	359.6	0.3
C21	C20	C19	C24	179.5	180.2
C19	C20	C21	C22	180.4	180.0
C19	C20	C21	H21	0.4	0.1
C19	C20	C24	C23	179.5	179.7
C19	C20	C24	H24	359.5	360.0
C19	C20	C21	C24	180.5	179.8
C21	C20	C24	C23	360.0	359.5
C21	C20	C24	H24	180.0	179.8
C20	C21	C22	N5	0.1	0.1
C22	C21	C20	H21	180.0	179.9
C20	C21	C22	H22	180.1	180.0
C19	C20	C24	C21	179.5	180.2
C24	C20	C21	C22	360.0	0.2
C24	C20	C21	H21	180.0	180.3
N5	C23	C24	C20	0.1	0.5
C20	C24	C23	H23	180.1	180.3
C23	C24	C20	H24	180.0	179.7
C22	C21	C20	C24	360.0	0.2
C20	C21	C22	H21	180.0	180.1
C21	C22	N5	C23	359.9	359.9
N5	C22	C21	H22	180.0	180.1
N5	C22	C21	H21	180.1	180.0
C21	C22	N5	H22	180.0	179.9
C22	N5	C23	C24	360.0	359.8
C22	N5	C23	H23	180.0	180.0
C20	C24	C23	N5	0.1	0.5
C23	N5	C22	H22	179.9	180.0
C24	C23	N5	H23	180.0	179.8
N5	C23	C24	H24	180.0	180.3
C20	C24	C23	H24	180.0	180.3
N5	C23	C24	H23	180.0	180.2
C2	C1	H1	N1	236.2	240.0
H1	C1	C2	C3	118.1	179.2
C2	C1	H1	H1A	118.1	120.1
H1	C1	C2	H2	238.1	299.1
H1	C1	C2	H2A	359.3	59.2
H1	C1	N1	C5	189.1	178.2
H1	C1	N1	C6	65.0	54.1
N1	C1	H1	H1A	241.9	240.1
C2	C1	H1A	N1	122.6	120.0
H1A	C1	C2	C3	240.1	299.2
C2	C1	H1A	H1	241.3	240.0
H1A	C1	C2	H2	0.1	59.1
H1A	C1	C2	H2A	121.3	179.3
H1A	C1	N1	C5	67.0	58.2
H1A	C1	N1	C6	302.9	294.2
N1	C1	H1A	H1	118.8	119.9
H2	C2	C1	N1	118.1	179.1
C1	C2	H2	C3	237.7	240.3
H2	C2	C1	H1	238.1	299.1
H2	C2	C1	H1A	0.1	59.1
C1	C2	H2	H2A	118.8	120.1
H2	C2	C3	C4	286.2	182.4
C3	C2	H2	H2A	241.1	239.9
H2	C2	C3	H3	46.2	302.4
H2	C2	C3	H3A	168.0	62.5
H2A	C2	C1	N1	239.3	299.2
C1	C2	H2A	C3	121.5	119.8
H2A	C2	C1	H1	359.3	59.2
H2A	C2	C1	H1A	121.3	179.3
C1	C2	H2A	H2	240.8	239.9
H2A	C2	C3	C4	165.0	62.3
C3	C2	H2A	H2	119.2	120.1
H2A	C2	C3	H3	285.0	182.2
H2A	C2	C3	H3A	46.8	302.4
C2	C3	H3	C4	236.7	240.2
H3	C3	C2	H2	46.2	302.4
H3	C3	C2	H2A	285.0	182.2
C2	C3	H3	H3A	118.4	120.1
H3	C3	C4	C5	198.5	297.7
C4	C3	H3	H3A	241.7	239.9
H3	C3	C4	H4	318.5	57.6
H3	C3	C4	H4A	80.7	177.8
C2	C3	H3A	C4	122.2	119.7
H3A	C3	C2	H2	168.0	62.5
H3A	C3	C2	H2A	46.8	302.4
C2	C3	H3A	H3	241.1	239.9
H3A	C3	C4	C5	76.7	177.5
C4	C3	H3A	H3	118.9	120.2
H3A	C3	C4	H4	196.7	297.5
H3A	C3	C4	H4A	318.9	57.6
C3	C4	H4	C5	235.9	240.2
H4	C4	C3	H3	318.5	57.6
H4	C4	C3	H3A	196.7	297.5
C3	C4	H4	H4A	117.9	120.1
H4	C4	C5	N1	232.0	180.9
C5	C4	H4	H4A	242.0	239.9
H4	C4	C5	H5	352.0	300.9
H4	C4	C5	H5A	112.6	60.9
C3	C4	H4A	C5	122.8	119.8
H4A	C4	C3	H3	80.7	177.8
H4A	C4	C3	H3A	318.9	57.6
C3	C4	H4A	H4	241.4	239.9
H4A	C4	C5	N1	109.7	60.8
C5	C4	H4A	H4	118.6	120.1
H4A	C4	C5	H5	229.7	180.7
H4A	C4	C5	H5A	350.4	300.7
C4	C5	H5	N1	238.7	240.0
H5	C5	C4	H4	352.0	300.9
H5	C5	C4	H4A	229.7	180.7
C4	C5	H5	H5A	119.4	120.0
H5	C5	N1	C6	60.3	65.8
N1	C5	H5	H5A	240.6	240.0
C4	C5	H5A	N1	120.9	120.0
H5A	C5	C4	H4	112.6	60.9
H5A	C5	C4	H4A	350.4	300.7
C4	C5	H5A	H5	240.4	240.0
H5A	C5	N1	C6	299.7	305.8
N1	C5	H5A	H5	119.6	120.0
N1	C6	H6	C7	240.1	240.0
N1	C6	H6	H6A	120.0	120.0
H6	C6	C7	O1	58.7	305.0
C7	C6	H6	H6A	239.9	240.0
H6	C6	C7	H7	178.7	65.0
H6	C6	C7	H7A	299.4	185.0
N1	C6	H6A	C7	120.0	120.0
N1	C6	H6A	H6	240.0	240.0
H6A	C6	C7	O1	298.7	185.1
C7	C6	H6A	H6	120.1	120.0
H6A	C6	C7	H7	58.7	305.1
H6A	C6	C7	H7A	179.4	65.0
C6	C7	H7	O1	238.7	240.0
H7	C7	C6	H6	178.7	65.0
H7	C7	C6	H6A	58.7	305.1
C6	C7	H7	H7A	119.3	119.9
H7	C7	O1	C8	118.6	60.0
O1	C7	H7	H7A	240.7	240.0
C6	C7	H7A	O1	120.9	120.0
H7A	C7	C6	H6	299.4	185.0
H7A	C7	C6	H6A	179.4	65.0
C6	C7	H7A	H7	240.4	240.1
H7A	C7	O1	C8	357.8	300.0
O1	C7	H7A	H7	119.6	120.0
H9	C9	C8	C11	179.9	180.2
C8	C9	H9	C10	180.0	180.1
H9	C9	C10	C13	180.2	180.1
H9	C9	C10	H10	0.2	0.1
C9	C10	H10	C13	180.0	180.0
H10	C10	C9	H9	0.2	0.1
H10	C10	C13	C12	179.8	179.7
H10	C10	C13	C14	0.5	360.0
C8	C11	H11	C12	180.0	180.1
H11	C11	C12	C13	180.0	180.0
H11	C11	C12	H12	0.1	0.1
C11	C12	H12	C13	180.0	179.9
H12	C12	C11	H11	0.1	0.1
H12	C12	C13	C14	359.4	360.0
H15	C15	C14	C16	180.2	180.3
C14	C15	H15	N3	180.0	179.9
H15	C15	N3	C17	180.0	179.9
H15	C15	N3	N4	359.8	359.9
C14	C16	H16	N2	180.0	180.0
H16	C16	N2	C17	180.1	180.0
N4	C18	H18	C19	180.0	180.0
H18	C18	C19	C20	359.6	0.3
H21	C21	C20	C24	180.0	180.3
C20	C21	H21	C22	180.0	179.9
H21	C21	C22	N5	180.1	180.0
H21	C21	C22	H22	0.1	359.9
C21	C22	H22	N5	180.0	180.1
H22	C22	C21	H21	0.1	359.9
H22	C22	N5	C23	179.9	180.0
N5	C23	H23	C24	180.0	179.8
H23	C23	C24	H24	0.0	0.0
C20	C24	H24	C23	180.0	179.7
H24	C24	C23	H23	0.0	0.0