Atom Nomenclature for TA8

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for TA8

Atom Name (V3) Atom Name (V2)
O42 O42
O41 O41
C4 C4
C41 C41
C32 C32
C3 C3
O31 O31
O32 O32
C22 C22
C2 C2
O21 O21
O22 O22
C10 C10
C11 C11
C12 C12
C1 C1
O12 O12
O11 O11
C21 C21
C31 C31
H42 H42
H411 H411
H412 H412
H321 H321
H322 H322
H31 H31
H32 H32
H221 H221
H222 H222
H21 H21
H22 H22
H101 H101
H102 H102
H103 H103
H11 H11
H121 H121
H122 H122
H12 H12