Atom Nomenclature for TA1

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for TA1

Atom Name (V3) Atom Name (V2)
O01 O01
C01 C01
C02 C02
O02 O02
C03 C03
O03 O03
C04 C04
C05 C05
C06 C06
C07 C07
C08 C08
C09 C09
C10 C10
C11 C11
O04 O04
C12 C12
O05 O05
C13 C13
C14 C14
O06 O06
C15 C15
C16 C16
C17 C17
O07 O07
C18 C18
C19 C19
C20 C20
O08 O08
C21 C21
O09 O09
C22 C22
O10 O10
C23 C23
C24 C24
C25 C25
C26 C26
O11 O11
C27 C27
O12 O12
C28 C28
O13 O13
C29 C29
N01 N01
C30 C30
O14 O14
C31 C31
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
C37 C37
C38 C38
C39 C39
C40 C40
C41 C41
C42 C42
C43 C43
C44 C44
C45 C45
C46 C46
C47 C47
H011 1H01
H021 1H02
H051 1H05
H061 1H06
HC71 1HC7
H081 1H08
H091 1H09
H101 1H10
H131 1H13
H132 2H13
H133 3H13
H141 1H14
H142 2H14
H151 1H15
H161 1H16
H162 2H16
H171 1H17
H071 1H07
H191 1H19
H192 2H19
H193 3H19
H211 1H21
H231 1H23
H232 2H23
H233 3H23
H261 1H26
H281 1H28
HO11 1HO1
H291 1H29
HN01 1HN0
H321 1H32
H331 1H33
H341 1H34
H351 1H35
H361 1H36
H381 1H38
H391 1H39
H401 1H40
H411 1H41
H421 1H42
H431 1H43
H432 2H43
H441 1H44
H442 2H44
H443 3H44
H461 1H46
H462 2H46
H463 3H46
H471 1H47
H472 2H47
H473 3H47