PDB Chemical Component T9N
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T9N
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C01 |
N02 |
1.439 |
1.464 |
N02 |
C03 |
1.402 |
1.381 |
C03 |
N04 |
1.374 |
1.301 |
C03 |
S24 |
1.671 |
1.709 |
N04 |
C05 |
1.383 |
1.312 |
C05 |
C06 |
1.511 |
1.507 |
C05 |
C07 |
1.415 |
1.354 |
C07 |
C08 |
1.505 |
1.470 |
C07 |
S24 |
1.663 |
1.761 |
C08 |
N09 |
1.341 |
1.333 |
C08 |
C21 |
1.452 |
1.417 |
N09 |
C10 |
1.361 |
1.323 |
C10 |
N11 |
1.453 |
1.382 |
C10 |
N19 |
1.381 |
1.328 |
N11 |
C12 |
1.470 |
1.397 |
C12 |
C13 |
1.402 |
1.388 |
C12 |
C18 |
1.408 |
1.389 |
C13 |
C14 |
1.395 |
1.386 |
C14 |
O15 |
1.395 |
1.359 |
C14 |
C16 |
1.441 |
1.389 |
C16 |
C17 |
1.381 |
1.381 |
C17 |
C18 |
1.431 |
1.382 |
N19 |
C20 |
1.359 |
1.322 |
C20 |
C21 |
1.403 |
1.399 |
C21 |
C22 |
1.524 |
1.432 |
C22 |
N23 |
1.145 |
1.136 |
C01 |
H011 |
1.100 |
1.090 |
C01 |
H012 |
1.100 |
1.091 |
C01 |
H013 |
1.100 |
1.090 |
N02 |
H02 |
1.000 |
0.970 |
C06 |
H061 |
1.100 |
1.090 |
C06 |
H062 |
1.100 |
1.090 |
C06 |
H063 |
1.100 |
1.090 |
N11 |
H11 |
1.000 |
0.971 |
C13 |
H13 |
1.080 |
1.080 |
C18 |
H18 |
1.080 |
1.080 |
O15 |
H15 |
0.950 |
0.967 |
C16 |
H16 |
1.080 |
1.080 |
C17 |
H17 |
1.080 |
1.080 |
C20 |
H20 |
1.080 |
1.079 |
Bond Angles for T9N
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C01 |
N02 |
C03 |
118.9 |
120.0 |
N02 |
C01 |
H011 |
109.5 |
109.5 |
N02 |
C01 |
H012 |
109.4 |
109.5 |
N02 |
C01 |
H013 |
109.5 |
109.5 |
C01 |
N02 |
H02 |
107.0 |
120.0 |
N02 |
C03 |
N04 |
129.4 |
124.9 |
N02 |
C03 |
S24 |
123.7 |
124.8 |
C03 |
N02 |
H02 |
107.1 |
120.0 |
N04 |
C03 |
S24 |
106.9 |
110.3 |
C03 |
N04 |
C05 |
113.2 |
117.2 |
C03 |
S24 |
C07 |
99.8 |
90.4 |
N04 |
C05 |
C06 |
121.0 |
122.9 |
N04 |
C05 |
C07 |
116.2 |
114.2 |
C06 |
C05 |
C07 |
122.8 |
122.9 |
C05 |
C06 |
H061 |
109.5 |
109.4 |
C05 |
C06 |
H062 |
109.5 |
109.5 |
C05 |
C06 |
H063 |
109.4 |
109.5 |
C05 |
C07 |
C08 |
128.9 |
126.0 |
C05 |
C07 |
S24 |
103.8 |
107.9 |
C08 |
C07 |
S24 |
127.2 |
126.1 |
C07 |
C08 |
N09 |
121.0 |
120.7 |
C07 |
C08 |
C21 |
118.6 |
120.6 |
N09 |
C08 |
C21 |
120.2 |
118.7 |
C08 |
N09 |
C10 |
118.2 |
120.7 |
C08 |
C21 |
C20 |
119.1 |
118.1 |
C08 |
C21 |
C22 |
119.3 |
120.9 |
N09 |
C10 |
N11 |
117.5 |
119.0 |
N09 |
C10 |
N19 |
124.0 |
122.1 |
N11 |
C10 |
N19 |
118.4 |
118.9 |
C10 |
N11 |
C12 |
121.9 |
120.0 |
C10 |
N11 |
H11 |
119.1 |
120.0 |
C10 |
N19 |
C20 |
119.5 |
121.2 |
N11 |
C12 |
C13 |
117.9 |
120.1 |
N11 |
C12 |
C18 |
122.1 |
120.0 |
C12 |
N11 |
H11 |
119.0 |
120.0 |
C13 |
C12 |
C18 |
119.9 |
119.9 |
C12 |
C13 |
C14 |
119.5 |
119.9 |
C12 |
C13 |
H13 |
120.3 |
120.1 |
C12 |
C18 |
C17 |
120.7 |
120.0 |
C12 |
C18 |
H18 |
119.7 |
120.0 |
C13 |
C14 |
O15 |
118.1 |
120.0 |
C13 |
C14 |
C16 |
121.1 |
119.9 |
C14 |
C13 |
H13 |
120.2 |
120.0 |
O15 |
C14 |
C16 |
120.8 |
120.0 |
C14 |
O15 |
H15 |
109.5 |
114.0 |
C14 |
C16 |
C17 |
119.2 |
120.1 |
C14 |
C16 |
H16 |
120.4 |
119.9 |
C16 |
C17 |
C18 |
119.5 |
120.2 |
C17 |
C16 |
H16 |
120.4 |
120.0 |
C16 |
C17 |
H17 |
120.2 |
119.9 |
C17 |
C18 |
H18 |
119.7 |
120.0 |
C18 |
C17 |
H17 |
120.2 |
119.9 |
N19 |
C20 |
C21 |
118.9 |
119.1 |
N19 |
C20 |
H20 |
120.6 |
120.4 |
C20 |
C21 |
C22 |
121.5 |
120.9 |
C21 |
C20 |
H20 |
120.6 |
120.5 |
C21 |
C22 |
N23 |
177.1 |
180.0 |
H011 |
C01 |
H012 |
109.5 |
109.4 |
H011 |
C01 |
H013 |
109.5 |
109.4 |
H012 |
C01 |
H013 |
109.5 |
109.5 |
H061 |
C06 |
H062 |
109.5 |
109.5 |
H061 |
C06 |
H063 |
109.5 |
109.5 |
H062 |
C06 |
H063 |
109.5 |
109.5 |
Torsion Angles for T9N
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C01 |
N02 |
C03 |
N04 |
120.3 |
0.1 |
C01 |
N02 |
C03 |
S24 |
300.7 |
179.7 |
C03 |
N02 |
C01 |
H02 |
238.7 |
179.9 |
H011 |
C01 |
N02 |
H012 |
240.0 |
240.0 |
H011 |
C01 |
N02 |
H013 |
120.0 |
120.0 |
H012 |
C01 |
N02 |
H013 |
240.0 |
240.0 |
C03 |
N02 |
C01 |
H011 |
180.0 |
180.0 |
C03 |
N02 |
C01 |
H012 |
300.0 |
299.9 |
C03 |
N02 |
C01 |
H013 |
60.0 |
60.0 |
C01 |
N02 |
C03 |
H02 |
121.3 |
180.1 |
N04 |
C03 |
N02 |
S24 |
179.6 |
180.3 |
N02 |
C03 |
N04 |
C05 |
179.6 |
180.0 |
N02 |
C03 |
S24 |
C07 |
181.3 |
179.9 |
N02 |
C03 |
N04 |
S24 |
180.4 |
179.7 |
N04 |
C03 |
N02 |
H02 |
359.0 |
180.0 |
N04 |
C03 |
S24 |
C07 |
1.7 |
359.7 |
C03 |
N04 |
C05 |
C06 |
179.5 |
180.0 |
C03 |
N04 |
C05 |
C07 |
359.4 |
0.0 |
N02 |
C03 |
S24 |
N04 |
179.7 |
180.3 |
S24 |
C03 |
N02 |
H02 |
179.4 |
359.7 |
S24 |
C03 |
N04 |
C05 |
359.2 |
0.2 |
C05 |
C07 |
S24 |
C03 |
358.1 |
0.3 |
C08 |
C07 |
S24 |
C03 |
177.0 |
180.0 |
C05 |
N04 |
C03 |
S24 |
359.2 |
0.2 |
C06 |
C05 |
N04 |
C07 |
180.1 |
179.9 |
N04 |
C05 |
C06 |
H061 |
0.0 |
90.0 |
N04 |
C05 |
C06 |
H062 |
120.0 |
210.0 |
N04 |
C05 |
C06 |
H063 |
240.0 |
330.0 |
N04 |
C05 |
C07 |
C08 |
182.8 |
180.0 |
N04 |
C05 |
C07 |
S24 |
1.7 |
359.7 |
N04 |
C05 |
C06 |
C07 |
179.9 |
180.1 |
C06 |
C05 |
C07 |
C08 |
2.7 |
0.1 |
C06 |
C05 |
C07 |
S24 |
181.6 |
179.8 |
H061 |
C06 |
C05 |
H062 |
240.0 |
240.0 |
H061 |
C06 |
C05 |
H063 |
120.0 |
120.0 |
H062 |
C06 |
C05 |
H063 |
240.0 |
240.0 |
C03 |
S24 |
C07 |
C05 |
358.1 |
0.3 |
N04 |
C05 |
C07 |
C06 |
180.1 |
179.9 |
C07 |
C05 |
C06 |
H061 |
180.1 |
269.9 |
C07 |
C05 |
C06 |
H062 |
300.1 |
29.9 |
C07 |
C05 |
C06 |
H063 |
60.1 |
149.9 |
C08 |
C07 |
C05 |
S24 |
181.1 |
180.3 |
C05 |
C07 |
C08 |
N09 |
211.0 |
360.0 |
C05 |
C07 |
C08 |
C21 |
35.0 |
179.7 |
C03 |
S24 |
C07 |
C08 |
177.0 |
180.0 |
C05 |
C07 |
C08 |
S24 |
178.7 |
179.6 |
N09 |
C08 |
C07 |
C21 |
176.0 |
180.3 |
C07 |
C08 |
N09 |
C10 |
181.2 |
180.0 |
C07 |
C08 |
C21 |
C20 |
179.3 |
179.8 |
C07 |
C08 |
C21 |
C22 |
1.3 |
0.0 |
C05 |
C07 |
S24 |
C08 |
181.1 |
180.3 |
S24 |
C07 |
C08 |
N09 |
32.3 |
180.4 |
S24 |
C07 |
C08 |
C21 |
216.3 |
0.0 |
N09 |
C08 |
C07 |
S24 |
32.3 |
180.4 |
C07 |
C08 |
N09 |
C21 |
184.0 |
179.7 |
N09 |
C08 |
C21 |
C20 |
3.2 |
359.5 |
N09 |
C08 |
C21 |
C22 |
185.2 |
179.7 |
C08 |
N09 |
C10 |
N11 |
182.5 |
180.0 |
C08 |
N09 |
C10 |
N19 |
0.9 |
360.0 |
C21 |
C08 |
C07 |
S24 |
216.3 |
0.0 |
C07 |
C08 |
C21 |
N09 |
176.1 |
180.3 |
C21 |
C08 |
N09 |
C10 |
357.1 |
0.3 |
N19 |
C20 |
C21 |
C08 |
358.5 |
0.5 |
C20 |
C21 |
C08 |
C22 |
178.0 |
179.7 |
C08 |
C21 |
C20 |
H20 |
178.5 |
180.2 |
C08 |
C21 |
C22 |
N23 |
271.3 |
317.9 |
C10 |
N09 |
C08 |
C21 |
357.1 |
0.3 |
N11 |
C10 |
N09 |
N19 |
181.5 |
180.0 |
N09 |
C10 |
N11 |
C12 |
334.1 |
174.5 |
N09 |
C10 |
N11 |
H11 |
154.1 |
354.5 |
N09 |
C10 |
N19 |
C20 |
0.8 |
0.0 |
N09 |
C10 |
N11 |
N19 |
178.6 |
180.0 |
N11 |
C10 |
N19 |
C20 |
179.2 |
180.0 |
C10 |
N11 |
C12 |
C13 |
209.6 |
146.2 |
C10 |
N11 |
C12 |
C18 |
30.3 |
326.0 |
C12 |
N11 |
C10 |
H11 |
180.0 |
180.0 |
N09 |
C10 |
N19 |
N11 |
181.5 |
180.0 |
N19 |
C10 |
N11 |
C12 |
155.5 |
354.5 |
N19 |
C10 |
N11 |
H11 |
335.5 |
174.5 |
C10 |
N19 |
C20 |
C21 |
359.6 |
359.7 |
C10 |
N19 |
C20 |
H20 |
179.6 |
180.0 |
C12 |
N11 |
C10 |
N19 |
155.5 |
354.5 |
C10 |
N11 |
C12 |
H11 |
180.0 |
180.0 |
C13 |
C12 |
N11 |
C18 |
179.3 |
180.2 |
N11 |
C12 |
C13 |
C14 |
179.4 |
180.0 |
N11 |
C12 |
C13 |
H13 |
359.4 |
0.0 |
N11 |
C12 |
C18 |
C17 |
180.0 |
179.8 |
N11 |
C12 |
C18 |
H18 |
360.0 |
359.9 |
N11 |
C12 |
C13 |
C18 |
180.6 |
179.8 |
C13 |
C12 |
N11 |
H11 |
29.6 |
326.2 |
C13 |
C12 |
C18 |
C17 |
0.7 |
359.6 |
C13 |
C12 |
C18 |
H18 |
180.7 |
179.7 |
C12 |
C13 |
C14 |
O15 |
181.3 |
180.0 |
C12 |
C13 |
C14 |
C16 |
1.2 |
0.0 |
C14 |
C13 |
C12 |
H13 |
180.0 |
179.9 |
N11 |
C12 |
C18 |
C13 |
179.3 |
180.2 |
C18 |
C12 |
N11 |
H11 |
210.3 |
146.0 |
C18 |
C12 |
C13 |
C14 |
358.8 |
0.2 |
C18 |
C12 |
C13 |
H13 |
178.8 |
180.3 |
C16 |
C17 |
C18 |
C12 |
360.0 |
0.5 |
C17 |
C18 |
C12 |
H18 |
180.0 |
179.8 |
C12 |
C18 |
C17 |
H17 |
179.9 |
180.2 |
C14 |
C13 |
C12 |
C18 |
358.8 |
0.2 |
C12 |
C13 |
C14 |
H13 |
180.0 |
180.1 |
O15 |
C14 |
C13 |
C16 |
180.1 |
180.0 |
C13 |
C14 |
O15 |
H15 |
180.0 |
90.0 |
C13 |
C14 |
C16 |
C17 |
359.4 |
360.0 |
C13 |
C14 |
C16 |
H16 |
179.5 |
179.9 |
C13 |
C14 |
O15 |
C16 |
179.9 |
180.0 |
O15 |
C14 |
C13 |
H13 |
1.2 |
360.0 |
O15 |
C14 |
C16 |
C17 |
179.4 |
180.0 |
O15 |
C14 |
C16 |
H16 |
359.4 |
359.9 |
C13 |
C14 |
C16 |
O15 |
180.1 |
180.0 |
C16 |
C14 |
C13 |
H13 |
181.2 |
180.0 |
C16 |
C14 |
O15 |
H15 |
0.1 |
270.0 |
C14 |
C16 |
C17 |
C18 |
360.0 |
359.8 |
C17 |
C16 |
C14 |
H16 |
180.0 |
180.0 |
C14 |
C16 |
C17 |
H17 |
180.0 |
180.0 |
C12 |
C18 |
C17 |
C16 |
360.0 |
0.5 |
C14 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
C16 |
C17 |
C18 |
H18 |
180.0 |
180.3 |
C18 |
C17 |
C16 |
H17 |
180.0 |
179.8 |
C12 |
C18 |
C17 |
H18 |
180.0 |
180.2 |
C18 |
C17 |
C16 |
H16 |
180.0 |
179.8 |
C16 |
C17 |
C18 |
H17 |
180.0 |
180.2 |
C08 |
C21 |
C20 |
N19 |
358.5 |
0.5 |
N19 |
C20 |
C21 |
C22 |
176.4 |
180.3 |
C21 |
C20 |
N19 |
H20 |
180.0 |
179.7 |
C08 |
C21 |
C20 |
C22 |
182.1 |
180.3 |
N19 |
C20 |
C21 |
H20 |
180.0 |
180.3 |
C20 |
C21 |
C22 |
N23 |
93.4 |
138.1 |
C08 |
C21 |
C22 |
C20 |
177.9 |
179.7 |
C22 |
C21 |
C20 |
H20 |
356.4 |
360.0 |
H011 |
C01 |
N02 |
C03 |
180.0 |
180.0 |
N02 |
C01 |
H011 |
H012 |
120.0 |
120.0 |
N02 |
C01 |
H011 |
H013 |
240.0 |
239.9 |
H011 |
C01 |
N02 |
H02 |
301.3 |
0.1 |
H012 |
C01 |
H011 |
H013 |
120.0 |
119.9 |
H012 |
C01 |
N02 |
C03 |
300.0 |
299.9 |
N02 |
C01 |
H012 |
H011 |
240.0 |
240.0 |
N02 |
C01 |
H012 |
H013 |
120.0 |
120.1 |
H012 |
C01 |
N02 |
H02 |
61.3 |
120.0 |
H011 |
C01 |
H012 |
H013 |
240.0 |
240.1 |
H013 |
C01 |
N02 |
C03 |
60.0 |
60.0 |
N02 |
C01 |
H013 |
H011 |
120.0 |
120.0 |
N02 |
C01 |
H013 |
H012 |
240.0 |
239.9 |
H013 |
C01 |
N02 |
H02 |
181.3 |
240.1 |
H011 |
C01 |
H013 |
H012 |
120.0 |
119.9 |
C01 |
N02 |
H02 |
C03 |
231.5 |
179.9 |
H02 |
N02 |
C01 |
H011 |
301.3 |
0.1 |
H02 |
N02 |
C01 |
H012 |
61.3 |
120.0 |
H02 |
N02 |
C01 |
H013 |
181.3 |
240.1 |
H02 |
N02 |
C03 |
N04 |
359.0 |
180.0 |
H02 |
N02 |
C03 |
S24 |
179.4 |
359.7 |
H061 |
C06 |
C05 |
C07 |
180.1 |
269.9 |
C05 |
C06 |
H061 |
H062 |
120.0 |
119.9 |
C05 |
C06 |
H061 |
H063 |
240.0 |
240.0 |
H062 |
C06 |
H061 |
H063 |
120.0 |
120.1 |
H062 |
C06 |
C05 |
C07 |
300.1 |
29.9 |
C05 |
C06 |
H062 |
H061 |
240.0 |
240.1 |
C05 |
C06 |
H062 |
H063 |
120.0 |
120.0 |
H061 |
C06 |
H062 |
H063 |
240.0 |
240.0 |
H063 |
C06 |
C05 |
C07 |
60.1 |
149.9 |
C05 |
C06 |
H063 |
H061 |
120.0 |
120.0 |
C05 |
C06 |
H063 |
H062 |
240.0 |
240.0 |
H061 |
C06 |
H063 |
H062 |
120.0 |
120.0 |
H11 |
N11 |
C10 |
N19 |
335.5 |
174.5 |
C10 |
N11 |
H11 |
C12 |
180.0 |
180.0 |
H11 |
N11 |
C12 |
C13 |
29.6 |
326.2 |
H11 |
N11 |
C12 |
C18 |
210.3 |
146.0 |
H13 |
C13 |
C12 |
C18 |
178.8 |
180.3 |
C12 |
C13 |
H13 |
C14 |
180.0 |
179.9 |
H13 |
C13 |
C14 |
O15 |
1.2 |
360.0 |
H13 |
C13 |
C14 |
C16 |
181.2 |
180.0 |
C12 |
C18 |
H18 |
C17 |
180.0 |
179.8 |
H18 |
C18 |
C17 |
H17 |
360.0 |
0.1 |
H15 |
O15 |
C14 |
C16 |
0.1 |
270.0 |
C14 |
C16 |
H16 |
C17 |
180.0 |
180.0 |
H16 |
C16 |
C17 |
C18 |
180.0 |
179.8 |
H16 |
C16 |
C17 |
H17 |
360.0 |
0.0 |
C16 |
C17 |
H17 |
C18 |
180.0 |
179.8 |
H17 |
C17 |
C16 |
H16 |
360.0 |
0.0 |
H17 |
C17 |
C18 |
H18 |
360.0 |
0.1 |
N19 |
C20 |
H20 |
C21 |
180.0 |
179.7 |
H20 |
C20 |
C21 |
C22 |
356.4 |
360.0 |