Atom Nomenclature for T9N

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T9N

Atom Name (V3) Atom Name (V2)
C01 C01
N02 N02
C03 C03
N04 N04
C05 C05
C06 C06
C07 C07
C08 C08
N09 N09
C10 C10
N11 N11
C12 C12
C13 C13
C14 C14
O15 O15
C16 C16
C17 C17
C18 C18
N19 N19
C20 C20
C21 C21
C22 C22
N23 N23
S24 S24
H011 H011
H012 H012
H013 H013
H02 H02
H061 H061
H062 H062
H063 H063
H11 H11
H13 H13
H18 H18
H15 H15
H16 H16
H17 H17
H20 H20