Atom Nomenclature for T8S

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T8S

Atom Name (V3) Atom Name (V2)
N1 N1
C4 C1
C5 C2
C6 C3
C7 C4
C8 C5
C10 C6
N N2
C C7
O O1
C1 C8
C11 C9
C2 C10
C3 C11
C9 C12
O1 O2
H10 H1
H11 H2
H12 H3
H13 H4
H14 H5
H15 H6
H16 H7
H2 H8
H1 H9
H H10
H3 H11
H21 H12
H19 H13
H20 H14
H4 H15
H5 H16
H6 H17
H9 H18
H8 H19
H7 H20
H17 H21
H18 H22