Atom Nomenclature for T8P

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T8P

Atom Name (V3) Atom Name (V2)
N1 N1
C4 C1
C5 C2
C6 C3
C7 C4
C8 C5
C10 C6
N N2
C C7
O O1
C1 C8
C11 C9
C12 C10
C2 C11
C3 C12
C9 C13
O1 O2
H5 H1
H6 H2
H7 H3
H8 H4
H9 H5
H10 H6
H13 H7
H14 H8
H2 H9
H1 H10
H H11
H17 H12
H15 H13
H16 H14
H3 H15
H4 H16
H11 H17
H12 H18