PDB Chemical Component T8J

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for T8J

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C	1.514	1.507
C1	O	1.225	1.213
N	C1	1.348	1.348
C2	N	1.464	1.469
C3	C2	1.509	1.534
N1	C3	1.460	1.469
N1	C4	1.463	1.470
C4	C5	1.519	1.534
C5	N	1.470	1.470
C6	N1	1.357	1.348
O1	C6	1.229	1.216
C6	C7	1.427	1.466
C7	C8	1.381	1.366
C9	C8	1.409	1.375
C10	C9	1.351	1.339
S	C10	1.697	1.706
C7	S	1.722	1.759
C4	H7	1.100	1.090
C4	H8	1.101	1.090
C5	H9	1.100	1.090
C5	H10	1.100	1.090
C8	H11	1.080	1.079
C10	H13	1.080	1.080
C	H	1.100	1.090
C	H2	1.100	1.090
C	H1	1.100	1.091
C2	H3	1.100	1.090
C2	H4	1.100	1.090
C3	H5	1.100	1.090
C3	H6	1.100	1.090
C9	H12	1.080	1.080

Bond Angles for T8J

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N	C1	C	119.3	120.0
C1	C	H	109.5	109.4
C1	C	H2	109.4	109.5
C1	C	H1	109.5	109.4
N	C1	O	120.9	120.0
C5	N	C1	126.8	120.6
N1	C3	C2	108.2	108.6
C3	C2	H3	109.2	109.6
C3	C2	H4	109.2	109.7
C4	N1	C3	111.3	118.8
C6	N1	C3	122.7	120.6
N1	C3	H5	109.8	109.6
N1	C3	H6	109.8	109.6
N1	C4	C5	110.4	108.6
N1	C4	H7	109.3	109.6
N1	C4	H8	109.2	109.6
C4	C5	N	112.6	108.6
C5	C4	H7	109.2	109.6
C5	C4	H8	109.2	109.6
C4	C5	H9	108.7	109.6
C4	C5	H10	108.7	109.6
N	C5	H9	108.7	109.6
N	C5	H10	108.7	109.6
C6	C7	C8	125.9	125.5
C6	C7	S	122.9	125.4
C8	C7	S	111.2	109.1
C7	C8	H11	124.5	123.4
C9	C8	H11	124.5	123.3
C9	C10	H13	123.9	124.5
C10	C9	H12	123.5	122.4
C7	S	C10	91.4	91.6
S	C10	H13	123.9	124.6
H7	C4	H8	109.5	109.8
H9	C5	H10	109.5	109.7
H	C	H2	109.5	109.5
H	C	H1	109.4	109.4
H2	C	H1	109.5	109.5
H3	C2	H4	109.5	109.6
H5	C3	H6	109.5	109.8

Torsion Angles for T8J

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N	C1	C	O	179.4	180.0
C5	N	C1	C	13.5	354.0
H	C	C1	H2	240.0	239.9
H	C	C1	H1	120.0	119.9
H2	C	C1	H1	240.0	240.0
N	C1	O	C	180.6	180.0
O	C1	C	H	0.0	246.7
O	C1	C	H2	120.0	6.8
O	C1	C	H1	240.0	126.8
C5	N	C1	O	192.9	174.1
N	C1	C	H	179.4	66.7
N	C1	C	H2	299.4	186.8
N	C1	C	H1	59.4	306.8
C4	C5	N	C1	221.9	235.3
C1	N	C5	H9	101.5	115.5
C1	N	C5	H10	342.4	355.0
N1	C3	C2	N	59.2	49.4
C2	N	C5	H9	286.7	295.5
C2	N	C5	H10	167.6	175.0
C4	N1	C3	C2	296.6	304.8
C6	N1	C3	C2	124.3	124.5
N1	C3	C2	H5	240.2	119.8
N1	C3	C2	H6	119.8	240.3
H3	C2	C3	H4	119.6	120.4
N1	C3	C2	H3	299.0	289.7
N1	C3	C2	H4	179.4	169.3
C3	N1	C4	C5	58.3	55.2
C3	N1	C4	H7	178.5	175.0
C3	N1	C4	H8	298.2	295.5
H5	C3	N1	H6	120.4	239.5
C6	N1	C4	C3	172.0	180.3
C4	N1	C3	H5	176.8	64.5
C4	N1	C3	H6	56.4	185.1
N1	C4	C5	N	311.1	310.6
C5	C4	N1	H7	239.8	240.2
C5	C4	N1	H8	120.1	119.7
N1	C4	C5	H9	71.6	70.4
N1	C4	C5	H10	190.6	190.8
H7	C4	N1	H8	240.3	239.5
C5	C4	N1	C3	58.3	55.2
N1	C4	C5	H7	120.2	119.7
N1	C4	C5	H8	239.9	240.3
N	C5	C4	H9	239.5	240.2
N	C5	C4	H10	120.5	119.8
H7	C4	C5	H8	119.7	120.5
H9	C5	C4	H10	241.0	239.5
N	C5	C4	H7	190.9	190.8
N	C5	C4	H8	71.2	70.3
C4	C5	N	H9	120.5	119.7
C4	C5	N	H10	239.5	240.2
H9	C5	N	H10	119.1	120.5
C4	N1	C6	C3	188.9	179.7
C6	N1	C3	H5	4.5	244.2
C6	N1	C3	H6	244.1	4.8
C6	N1	C4	H7	350.5	355.3
C6	N1	C4	H8	110.2	115.8
O1	C6	C7	S	44.1	221.1
C7	C6	N1	C3	33.0	353.3
C8	C7	C6	S	179.0	180.3
C6	C7	C8	H11	10.6	359.9
C6	C7	S	C10	174.4	180.0
C6	C7	C8	S	180.9	179.7
C9	C8	C7	H11	180.0	180.0
C8	C7	S	C10	355.2	359.7
C9	C8	C7	S	9.7	0.2
C7	C8	C9	H11	180.0	180.0
C10	C9	C8	H11	168.8	180.0
C7	S	C10	C9	358.4	0.3
S	C10	C9	H13	180.0	179.9
C9	C10	S	H13	180.0	180.1
S	C10	C9	H12	187.6	180.0
C6	C7	S	C8	179.2	180.3
S	C7	C8	H11	189.7	180.2
C7	S	C10	H13	178.3	180.1
H7	C4	N1	C3	178.5	175.0
N1	C4	H7	C5	239.1	240.8
N1	C4	H7	H8	119.6	120.4
H7	C4	C5	N	190.9	190.8
C5	C4	H7	H8	240.5	239.6
H7	C4	C5	H9	311.4	310.6
H7	C4	C5	H10	70.4	71.1
H8	C4	N1	C3	298.2	295.5
N1	C4	H8	C5	120.9	119.1
N1	C4	H8	H7	240.4	239.6
H8	C4	C5	N	71.2	70.3
C5	C4	H8	H7	119.5	120.5
H8	C4	C5	H9	191.7	190.1
H8	C4	C5	H10	310.8	310.6
H9	C5	N	C1	101.5	115.5
C4	C5	H9	N	237.1	240.8
H9	C5	C4	H7	311.4	310.6
H9	C5	C4	H8	191.7	190.1
C4	C5	H9	H10	118.5	120.4
N	C5	H9	H10	241.4	239.6
H10	C5	N	C1	342.4	355.0
C4	C5	H10	N	122.9	119.2
H10	C5	C4	H7	70.4	71.1
H10	C5	C4	H8	310.8	310.6
C4	C5	H10	H9	241.5	239.6
N	C5	H10	H9	118.6	120.4
H11	C8	C7	S	189.7	180.2
H13	C10	C9	H12	7.6	0.2
C1	C	H	H2	120.0	120.0
C1	C	H	H1	240.0	240.1
H2	C	H	H1	120.0	120.0
C1	C	H2	H	240.0	240.0
C1	C	H2	H1	120.0	120.0
H	C	H2	H1	240.0	240.0
C1	C	H1	H	120.0	119.9
C1	C	H1	H2	240.0	240.0
H	C	H1	H2	120.0	120.1
C3	C2	H3	H4	240.5	239.5
C3	C2	H4	H3	119.5	120.4
N1	C3	H5	C2	118.8	240.8
H5	C3	C2	H3	58.8	169.9
H5	C3	C2	H4	299.2	49.5
N1	C3	H5	H6	239.4	120.4
N1	C3	H6	C2	241.1	119.1
H6	C3	C2	H3	179.2	49.4
H6	C3	C2	H4	59.6	289.0
N1	C3	H6	H5	120.6	239.5
H12	C9	C8	H11	348.8	359.7
H12	C9	C10	H13	7.6	0.2