PDB Chemical Component T8D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for T8D

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C	1.516	1.507
C1	O	1.226	1.212
N	C1	1.347	1.348
C2	N	1.461	1.470
C3	C2	1.504	1.534
N1	C3	1.473	1.470
N1	C4	1.472	1.470
C4	C5	1.505	1.534
C5	N	1.465	1.470
S	N1	1.630	1.656
S	O1	1.430	1.421
S	O2	1.429	1.421
C6	S	1.735	1.762
C7	C6	1.375	1.333
C8	C7	1.418	1.385
C9	C8	1.390	1.335
CL	C9	1.713	1.736
C9	S1	1.716	1.760
S1	C6	1.713	1.758
C4	H8	1.100	1.089
C4	H7	1.100	1.090
C5	H10	1.100	1.091
C5	H9	1.100	1.090
C7	H11	1.080	1.080
C8	H12	1.080	1.080
C	H	1.100	1.089
C	H1	1.100	1.090
C	H2	1.100	1.091
C2	H4	1.100	1.089
C2	H3	1.100	1.090
C3	H6	1.100	1.090
C3	H5	1.100	1.090

Bond Angles for T8D

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N	C1	C	118.0	119.9
C1	C	H	109.5	109.5
C1	C	H1	109.5	109.5
C1	C	H2	109.5	109.4
N	C1	O	121.2	120.0
C5	N	C1	124.7	120.5
N1	C3	C2	108.7	108.6
C3	C2	H4	109.5	109.6
C3	C2	H3	109.4	109.8
C4	N1	C3	112.8	118.8
N1	C3	H6	109.7	109.6
N1	C3	H5	109.7	109.6
N1	C4	C5	108.4	108.6
N1	C4	H8	109.7	109.6
N1	C4	H7	109.7	109.5
C4	C5	N	109.7	108.7
C5	C4	H8	109.7	109.6
C5	C4	H7	109.7	109.6
C4	C5	H10	109.4	109.6
C4	C5	H9	109.4	109.6
N	C5	H10	109.4	109.6
N	C5	H9	109.4	109.6
C6	S	O1	107.1	106.4
C6	S	O2	108.0	106.4
C7	C6	S	125.9	125.2
C8	C7	H11	124.4	122.5
C9	C8	H12	124.4	122.5
H8	C4	H7	109.5	109.8
H10	C5	H9	109.4	109.7
H	C	H1	109.4	109.5
H	C	H2	109.5	109.5
H1	C	H2	109.4	109.4
H4	C2	H3	109.5	109.6
H6	C3	H5	109.5	109.7

Torsion Angles for T8D

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N	C1	C	O	182.9	180.0
C5	N	C1	C	3.0	174.9
H	C	C1	H1	240.0	239.9
H	C	C1	H2	120.0	120.0
H1	C	C1	H2	240.0	240.1
N	C1	O	C	177.1	180.0
O	C1	C	H	0.0	185.3
O	C1	C	H1	120.0	305.4
O	C1	C	H2	240.0	65.3
C5	N	C1	O	185.9	354.8
N	C1	C	H	182.9	5.3
N	C1	C	H1	302.9	125.4
N	C1	C	H2	62.8	245.3
C4	C5	N	C1	117.7	235.2
C1	N	C5	H10	357.7	115.5
C1	N	C5	H9	237.8	355.0
N1	C3	C2	N	303.2	49.4
C2	N	C5	H10	180.5	295.5
C2	N	C5	H9	60.6	175.0
C4	N1	C3	C2	58.4	304.8
N1	C3	C2	H6	240.1	119.7
N1	C3	C2	H5	119.9	240.2
H4	C2	C3	H3	120.0	120.5
N1	C3	C2	H4	183.2	289.7
N1	C3	C2	H3	63.2	169.2
C3	N1	C4	C5	301.7	55.2
C3	N1	C4	H8	61.5	175.0
C3	N1	C4	H7	181.9	295.5
H6	C3	N1	H5	120.2	239.5
C4	N1	C3	H6	298.5	64.6
C4	N1	C3	H5	178.2	185.1
N1	C4	C5	N	56.9	310.6
C5	C4	N1	H8	240.2	240.2
C5	C4	N1	H7	119.8	119.7
N1	C4	C5	H10	177.0	70.4
N1	C4	C5	H9	296.9	190.8
H8	C4	N1	H7	239.7	239.5
C5	C4	N1	C3	301.7	55.2
N1	C4	C5	H8	119.8	119.8
N1	C4	C5	H7	240.2	240.3
N	C5	C4	H10	239.9	240.3
N	C5	C4	H9	120.0	119.8
H8	C4	C5	H7	120.3	120.5
H10	C5	C4	H9	240.1	239.6
N	C5	C4	H8	297.1	190.9
N	C5	C4	H7	176.7	70.3
C4	C5	N	H10	120.1	119.7
C4	C5	N	H9	240.0	240.2
H10	C5	N	H9	119.9	120.5
S	N1	C3	H6	80.8	244.8
S	N1	C3	H5	320.6	5.3
S	N1	C4	H8	279.1	354.7
S	N1	C4	H7	39.4	115.2
C6	S	O1	O2	236.4	237.0
C7	C6	S	O1	162.7	336.5
C6	S	O2	O1	123.2	123.0
C7	C6	S	O2	31.8	203.6
C8	C7	C6	S	167.4	180.0
C9	C8	C7	H11	190.8	180.0
CL	C9	C8	H12	354.0	0.0
S1	C9	C8	H12	174.1	180.3
H8	C4	N1	C3	61.5	175.0
N1	C4	H8	C5	241.0	240.8
N1	C4	H8	H7	120.5	120.4
H8	C4	C5	N	297.1	190.9
C5	C4	H8	H7	239.5	239.6
H8	C4	C5	H10	57.1	310.6
H8	C4	C5	H9	177.0	71.0
H7	C4	N1	C3	181.9	295.5
N1	C4	H7	C5	119.0	119.1
N1	C4	H7	H8	239.5	239.6
H7	C4	C5	N	176.7	70.3
C5	C4	H7	H8	120.5	120.5
H7	C4	C5	H10	296.8	190.0
H7	C4	C5	H9	56.7	310.5
H10	C5	N	C1	357.7	115.5
C4	C5	H10	N	239.8	240.8
H10	C5	C4	H8	57.1	310.6
H10	C5	C4	H7	296.8	190.0
C4	C5	H10	H9	119.9	120.4
N	C5	H10	H9	240.1	239.6
H9	C5	N	C1	237.8	355.0
C4	C5	H9	N	120.2	119.2
H9	C5	C4	H8	177.0	71.0
H9	C5	C4	H7	56.7	310.5
C4	C5	H9	H10	240.1	239.6
N	C5	H9	H10	119.9	120.4
H11	C7	C6	S	347.4	359.9
H12	C8	C7	H11	10.8	0.1
C1	C	H	H1	120.0	120.1
C1	C	H	H2	240.0	240.0
H1	C	H	H2	119.9	120.0
C1	C	H1	H	240.0	239.9
C1	C	H1	H2	120.0	119.9
H	C	H1	H2	240.0	240.0
C1	C	H2	H	120.1	120.0
C1	C	H2	H1	240.0	240.1
H	C	H2	H1	119.9	120.0
C3	C2	H4	H3	240.0	239.4
C3	C2	H3	H4	120.0	120.5
N1	C3	H6	C2	119.3	240.8
H6	C3	C2	H4	303.1	169.9
H6	C3	C2	H3	183.1	49.5
N1	C3	H6	H5	239.6	120.4
N1	C3	H5	C2	240.7	119.2
H5	C3	C2	H4	63.3	49.5
H5	C3	C2	H3	303.3	289.0
N1	C3	H5	H6	120.4	239.6