Atom Nomenclature for T8A

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T8A

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C15 C3
C17 C4
C20 C5
C02 C6
C03 C7
C06 C8
C07 C9
C08 C10
C09 C11
C11 C12
C12 C13
C14 C14
C16 C15
C18 C16
C19 C17
N05 N1
O01 O1
H101 H1
H131 H2
H151 H3
H171 H4
H201 H5
H202 H6
H031 H7
H1 H8
H032 H9
H061 H10
H062 H11
H081 H12
H091 H13
H111 H14
H161 H15
H181 H16
H191 H17