Atom Nomenclature for T86

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T86

Atom Name (V3) Atom Name (V2)
CL1 CL1
CL2 CL2
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C12 C7
N13 N1
C14 C8
C15 C9
C16 C10
C17 C11
C18 C12
C19 C13
O23 O1
O24 O2
C25 C14
C26 C15
N27 N2
O28 O3
O29 O4
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12