PDB Chemical Component T81
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T81
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C |
1.519 |
1.507 |
| C1 |
O |
1.226 |
1.212 |
| N |
C1 |
1.352 |
1.347 |
| C2 |
N |
1.461 |
1.472 |
| C3 |
C2 |
1.513 |
1.532 |
| N1 |
C3 |
1.468 |
1.469 |
| C4 |
N1 |
1.478 |
1.469 |
| C5 |
C4 |
1.500 |
1.507 |
| C6 |
C5 |
1.395 |
1.334 |
| C7 |
C6 |
1.414 |
1.384 |
| C8 |
C7 |
1.407 |
1.335 |
| BR |
C8 |
1.873 |
1.891 |
| C8 |
S |
1.712 |
1.759 |
| S |
C5 |
1.735 |
1.758 |
| N1 |
C9 |
1.468 |
1.469 |
| C9 |
C10 |
1.510 |
1.532 |
| C10 |
N |
1.461 |
1.471 |
| C4 |
H8 |
1.100 |
1.090 |
| C4 |
H7 |
1.100 |
1.090 |
| C6 |
H9 |
1.080 |
1.080 |
| C7 |
H10 |
1.080 |
1.081 |
| C10 |
H14 |
1.100 |
1.090 |
| C10 |
H13 |
1.100 |
1.089 |
| C |
H |
1.100 |
1.090 |
| C |
H2 |
1.101 |
1.090 |
| C |
H1 |
1.100 |
1.090 |
| C2 |
H4 |
1.100 |
1.090 |
| C2 |
H3 |
1.100 |
1.090 |
| C3 |
H6 |
1.100 |
1.091 |
| C3 |
H5 |
1.100 |
1.091 |
| C9 |
H12 |
1.100 |
1.090 |
| C9 |
H11 |
1.100 |
1.090 |
Bond Angles for T81
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
C1 |
C |
119.3 |
120.0 |
| C1 |
C |
H |
109.5 |
109.5 |
| C1 |
C |
H2 |
109.5 |
109.5 |
| C1 |
C |
H1 |
109.5 |
109.4 |
| N |
C1 |
O |
121.0 |
120.0 |
| C10 |
N |
C1 |
122.4 |
120.9 |
| N1 |
C3 |
C2 |
111.5 |
109.4 |
| C3 |
C2 |
H4 |
109.4 |
109.6 |
| C3 |
C2 |
H3 |
109.4 |
109.8 |
| C4 |
N1 |
C3 |
110.7 |
111.0 |
| C3 |
N1 |
C9 |
109.0 |
111.2 |
| N1 |
C3 |
H6 |
109.0 |
109.5 |
| N1 |
C3 |
H5 |
109.0 |
109.5 |
| C4 |
N1 |
C9 |
111.7 |
111.0 |
| C5 |
C4 |
H8 |
108.4 |
109.5 |
| C5 |
C4 |
H7 |
108.3 |
109.5 |
| C7 |
C6 |
H9 |
123.5 |
122.5 |
| C8 |
C7 |
H10 |
124.6 |
122.5 |
| N1 |
C9 |
C10 |
111.3 |
109.3 |
| N1 |
C9 |
H12 |
109.0 |
109.5 |
| N1 |
C9 |
H11 |
109.0 |
109.4 |
| C9 |
C10 |
H14 |
109.5 |
109.6 |
| C9 |
C10 |
H13 |
109.5 |
109.8 |
| N |
C10 |
H14 |
109.5 |
109.6 |
| N |
C10 |
H13 |
109.5 |
109.6 |
| H8 |
C4 |
H7 |
109.5 |
109.5 |
| H14 |
C10 |
H13 |
109.5 |
109.7 |
| H |
C |
H2 |
109.5 |
109.5 |
| H |
C |
H1 |
109.4 |
109.5 |
| H2 |
C |
H1 |
109.5 |
109.5 |
| H4 |
C2 |
H3 |
109.5 |
109.6 |
| H6 |
C3 |
H5 |
109.5 |
109.5 |
| H12 |
C9 |
H11 |
109.5 |
109.5 |
Torsion Angles for T81
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
C1 |
C |
O |
177.8 |
180.0 |
| C10 |
N |
C1 |
C |
190.6 |
180.0 |
| H |
C |
C1 |
H2 |
240.0 |
240.0 |
| H |
C |
C1 |
H1 |
120.0 |
120.0 |
| H2 |
C |
C1 |
H1 |
240.0 |
240.0 |
| N |
C1 |
O |
C |
182.2 |
180.0 |
| O |
C1 |
C |
H |
360.0 |
240.0 |
| O |
C1 |
C |
H2 |
120.0 |
0.0 |
| O |
C1 |
C |
H1 |
240.0 |
120.0 |
| C10 |
N |
C1 |
O |
8.4 |
0.0 |
| N |
C1 |
C |
H |
177.8 |
60.0 |
| N |
C1 |
C |
H2 |
297.8 |
180.0 |
| N |
C1 |
C |
H1 |
57.8 |
300.0 |
| C1 |
N |
C10 |
H14 |
357.6 |
248.5 |
| C1 |
N |
C10 |
H13 |
237.6 |
8.9 |
| N1 |
C3 |
C2 |
N |
302.4 |
306.1 |
| C2 |
N |
C10 |
H14 |
181.2 |
68.5 |
| C2 |
N |
C10 |
H13 |
61.2 |
188.9 |
| C4 |
N1 |
C3 |
C2 |
180.1 |
187.3 |
| C2 |
C3 |
N1 |
C9 |
56.8 |
63.1 |
| N1 |
C3 |
C2 |
H6 |
239.7 |
119.9 |
| N1 |
C3 |
C2 |
H5 |
120.3 |
240.0 |
| H4 |
C2 |
C3 |
H3 |
119.9 |
120.5 |
| N1 |
C3 |
C2 |
H4 |
182.4 |
186.5 |
| N1 |
C3 |
C2 |
H3 |
62.4 |
66.0 |
| C4 |
N1 |
C3 |
C9 |
123.3 |
124.1 |
| C3 |
N1 |
C9 |
C10 |
302.6 |
296.9 |
| C3 |
N1 |
C9 |
H12 |
62.9 |
56.9 |
| C3 |
N1 |
C9 |
H11 |
182.3 |
177.0 |
| H6 |
C3 |
N1 |
H5 |
119.4 |
240.0 |
| C3 |
N1 |
C4 |
C9 |
238.2 |
235.7 |
| C4 |
N1 |
C3 |
H6 |
59.8 |
307.2 |
| C4 |
N1 |
C3 |
H5 |
300.4 |
67.2 |
| C4 |
N1 |
C9 |
C10 |
179.8 |
172.8 |
| C4 |
N1 |
C9 |
H12 |
300.1 |
292.8 |
| C4 |
N1 |
C9 |
H11 |
59.6 |
52.8 |
| C5 |
C4 |
N1 |
C3 |
199.8 |
170.0 |
| C5 |
C4 |
N1 |
C9 |
321.6 |
294.3 |
| H8 |
C4 |
C5 |
H7 |
118.7 |
120.0 |
| C6 |
C5 |
C4 |
H8 |
345.0 |
330.0 |
| C6 |
C5 |
C4 |
H7 |
226.3 |
210.0 |
| C8 |
C7 |
C6 |
H9 |
191.4 |
180.0 |
| BR |
C8 |
C7 |
H10 |
348.9 |
0.1 |
| S |
C8 |
C7 |
H10 |
169.2 |
179.8 |
| S |
C5 |
C4 |
H8 |
165.8 |
149.7 |
| S |
C5 |
C4 |
H7 |
47.2 |
29.7 |
| C9 |
N1 |
C3 |
C2 |
56.8 |
63.1 |
| C4 |
N1 |
C9 |
C3 |
237.3 |
235.9 |
| C9 |
N1 |
C3 |
H6 |
296.5 |
183.1 |
| C9 |
N1 |
C3 |
H5 |
177.1 |
303.1 |
| N1 |
C9 |
C10 |
H14 |
178.8 |
294.2 |
| N1 |
C9 |
C10 |
H13 |
298.8 |
173.7 |
| H12 |
C9 |
N1 |
H11 |
240.6 |
239.9 |
| N1 |
C9 |
C10 |
H12 |
120.3 |
120.0 |
| N1 |
C9 |
C10 |
H11 |
239.7 |
240.1 |
| N |
C10 |
C9 |
H14 |
240.0 |
119.7 |
| N |
C10 |
C9 |
H13 |
120.0 |
240.2 |
| H14 |
C10 |
C9 |
H13 |
240.0 |
120.5 |
| N1 |
C9 |
C10 |
N |
58.8 |
53.9 |
| C9 |
C10 |
N |
H14 |
120.0 |
240.3 |
| C9 |
C10 |
N |
H13 |
240.0 |
119.9 |
| H14 |
C10 |
N |
H13 |
120.0 |
239.6 |
| H8 |
C4 |
N1 |
C3 |
320.5 |
290.0 |
| H8 |
C4 |
N1 |
C9 |
82.3 |
54.3 |
| C5 |
C4 |
H8 |
H7 |
242.0 |
240.0 |
| H7 |
C4 |
N1 |
C3 |
79.2 |
50.0 |
| H7 |
C4 |
N1 |
C9 |
201.0 |
174.3 |
| C5 |
C4 |
H7 |
H8 |
118.0 |
120.0 |
| H10 |
C7 |
C6 |
H9 |
11.4 |
360.0 |
| H14 |
C10 |
N |
C1 |
357.6 |
248.5 |
| C9 |
C10 |
H14 |
H13 |
120.0 |
239.4 |
| N |
C10 |
H14 |
H13 |
240.0 |
120.3 |
| H13 |
C10 |
N |
C1 |
237.6 |
8.9 |
| C9 |
C10 |
H13 |
H14 |
240.0 |
120.5 |
| N |
C10 |
H13 |
H14 |
120.0 |
239.6 |
| C1 |
C |
H |
H2 |
120.0 |
120.0 |
| C1 |
C |
H |
H1 |
240.0 |
240.0 |
| H2 |
C |
H |
H1 |
120.0 |
120.1 |
| C1 |
C |
H2 |
H |
240.0 |
240.0 |
| C1 |
C |
H2 |
H1 |
120.0 |
120.0 |
| H |
C |
H2 |
H1 |
240.0 |
240.0 |
| C1 |
C |
H1 |
H |
120.0 |
120.0 |
| C1 |
C |
H1 |
H2 |
240.0 |
240.0 |
| H |
C |
H1 |
H2 |
120.0 |
120.0 |
| C3 |
C2 |
H4 |
H3 |
240.2 |
239.3 |
| C3 |
C2 |
H3 |
H4 |
119.9 |
120.5 |
| N1 |
C3 |
H6 |
C2 |
121.9 |
240.1 |
| H6 |
C3 |
C2 |
H4 |
302.7 |
66.5 |
| H6 |
C3 |
C2 |
H3 |
182.8 |
306.0 |
| H6 |
C3 |
N1 |
C9 |
296.5 |
183.1 |
| N1 |
C3 |
H6 |
H5 |
240.9 |
120.0 |
| N1 |
C3 |
H5 |
C2 |
238.1 |
119.9 |
| H5 |
C3 |
C2 |
H4 |
62.1 |
306.5 |
| H5 |
C3 |
C2 |
H3 |
302.1 |
186.0 |
| H5 |
C3 |
N1 |
C9 |
177.1 |
303.1 |
| N1 |
C3 |
H5 |
H6 |
119.1 |
240.0 |
| N1 |
C9 |
H12 |
C10 |
238.3 |
240.1 |
| N1 |
C9 |
H12 |
H11 |
119.1 |
120.0 |
| H12 |
C9 |
C10 |
H14 |
58.5 |
174.2 |
| H12 |
C9 |
C10 |
H13 |
178.5 |
53.6 |
| N1 |
C9 |
H11 |
C10 |
121.7 |
119.8 |
| N1 |
C9 |
H11 |
H12 |
240.9 |
239.9 |
| H11 |
C9 |
C10 |
H14 |
299.0 |
54.1 |
| H11 |
C9 |
C10 |
H13 |
59.0 |
293.6 |