Atom Nomenclature for T7Z

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T7Z

Atom Name (V3) Atom Name (V2)
C01 C01
N02 N02
C03 C03
N04 N04
C05 C05
C06 C06
C07 C07
C08 C08
N09 N09
C10 C10
N11 N11
C12 C12
C13 C13
C14 C14
S15 S15
N16 N16
C17 C17
C18 C18
O19 O19
C20 C20
C21 C21
O22 O22
O23 O23
C24 C24
C25 C25
C26 C26
C27 C27
N28 N28
C29 C29
C30 C30
C31 C31
N32 N32
S33 S33
H011 H011
H012 H012
H013 H013
H04 H04
H061 H061
H062 H062
H063 H063
H11 H11
H13 H13
H27 H27
H171 H171
H172 H172
H211 H211
H212 H212
H181 H181
H182 H182
H201 H201
H202 H202
H251 H251
H252 H252
H253 H253
H26 H26
H29 H29