PDB Chemical Component T7Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T7Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C |
1.507 |
1.507 |
| C1 |
O |
1.220 |
1.213 |
| N |
C1 |
1.344 |
1.348 |
| C2 |
N |
1.412 |
1.400 |
| C3 |
C2 |
1.394 |
1.389 |
| C4 |
C3 |
1.383 |
1.382 |
| C5 |
C4 |
1.384 |
1.382 |
| C6 |
C5 |
1.388 |
1.389 |
| C6 |
C7 |
1.389 |
1.387 |
| C7 |
C2 |
1.387 |
1.388 |
| N1 |
C6 |
1.421 |
1.399 |
| C8 |
N1 |
1.468 |
1.468 |
| C9 |
C8 |
1.514 |
1.545 |
| C10 |
C9 |
1.518 |
1.547 |
| C11 |
C10 |
1.504 |
1.513 |
| C11 |
N1 |
1.367 |
1.345 |
| O1 |
C11 |
1.217 |
1.213 |
| C4 |
H4 |
1.080 |
1.079 |
| C5 |
H5 |
1.081 |
1.079 |
| C7 |
H6 |
1.080 |
1.080 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H7 |
1.100 |
1.090 |
| C10 |
H12 |
1.100 |
1.090 |
| C10 |
H11 |
1.100 |
1.090 |
| N |
H2 |
1.000 |
0.970 |
| C |
H |
1.100 |
1.090 |
| C |
H13 |
1.099 |
1.090 |
| C |
H1 |
1.100 |
1.090 |
| C3 |
H3 |
1.081 |
1.080 |
| C9 |
H10 |
1.100 |
1.090 |
| C9 |
H9 |
1.100 |
1.089 |
Bond Angles for T7Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
C1 |
C |
112.0 |
120.0 |
| C1 |
C |
H |
109.5 |
109.5 |
| C1 |
C |
H13 |
109.5 |
109.5 |
| C1 |
C |
H1 |
109.5 |
109.5 |
| N |
C1 |
O |
125.7 |
120.0 |
| C1 |
N |
H2 |
115.2 |
120.1 |
| C7 |
C2 |
N |
116.2 |
120.1 |
| C2 |
N |
H2 |
115.3 |
119.9 |
| C4 |
C3 |
C2 |
119.2 |
120.1 |
| C5 |
C4 |
C3 |
121.0 |
120.1 |
| C3 |
C4 |
H4 |
119.5 |
120.0 |
| C4 |
C3 |
H3 |
120.4 |
120.0 |
| C5 |
C4 |
H4 |
119.5 |
119.9 |
| N1 |
C6 |
C5 |
120.4 |
120.0 |
| C6 |
C5 |
H5 |
120.4 |
120.0 |
| C6 |
C7 |
C2 |
119.3 |
119.9 |
| N1 |
C6 |
C7 |
119.0 |
120.0 |
| C6 |
C7 |
H6 |
120.4 |
120.1 |
| C2 |
C7 |
H6 |
120.3 |
120.1 |
| C9 |
C8 |
H8 |
110.8 |
110.3 |
| C9 |
C8 |
H7 |
110.8 |
110.3 |
| C11 |
C10 |
C9 |
104.3 |
104.3 |
| C9 |
C10 |
H12 |
110.7 |
110.5 |
| C9 |
C10 |
H11 |
110.7 |
110.5 |
| C10 |
C9 |
H10 |
110.8 |
110.9 |
| C10 |
C9 |
H9 |
110.7 |
111.0 |
| C11 |
C10 |
H12 |
110.7 |
110.5 |
| C11 |
C10 |
H11 |
110.7 |
110.6 |
| H8 |
C8 |
H7 |
109.4 |
110.2 |
| H12 |
C10 |
H11 |
109.5 |
110.4 |
| H |
C |
H13 |
109.4 |
109.4 |
| H |
C |
H1 |
109.5 |
109.5 |
| H13 |
C |
H1 |
109.5 |
109.4 |
| H10 |
C9 |
H9 |
109.5 |
110.9 |
Torsion Angles for T7Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
C1 |
C |
O |
180.2 |
180.0 |
| C |
C1 |
N |
H2 |
22.1 |
5.5 |
| H |
C |
C1 |
H13 |
240.0 |
240.0 |
| H |
C |
C1 |
H1 |
120.0 |
120.0 |
| H13 |
C |
C1 |
H1 |
240.0 |
240.1 |
| N |
C1 |
O |
C |
179.7 |
180.0 |
| O |
C1 |
C |
H |
0.0 |
240.0 |
| O |
C1 |
C |
H13 |
120.0 |
0.0 |
| O |
C1 |
C |
H1 |
240.0 |
120.0 |
| O |
C1 |
N |
H2 |
202.4 |
185.4 |
| N |
C1 |
C |
H |
180.2 |
60.0 |
| N |
C1 |
C |
H13 |
300.2 |
180.0 |
| N |
C1 |
C |
H1 |
60.2 |
299.9 |
| C7 |
C2 |
N |
C1 |
219.9 |
214.8 |
| C2 |
N |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
N |
C2 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
N |
179.2 |
180.0 |
| C6 |
C7 |
C2 |
N |
180.9 |
180.0 |
| N |
C2 |
C7 |
H6 |
0.9 |
360.0 |
| C3 |
C2 |
N |
H2 |
221.1 |
214.7 |
| C5 |
C4 |
C3 |
C2 |
359.8 |
0.0 |
| C2 |
C3 |
C4 |
H4 |
179.8 |
180.3 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
179.7 |
| C3 |
C2 |
C7 |
H6 |
179.8 |
180.0 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
179.7 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.3 |
| C5 |
C4 |
C3 |
H3 |
179.8 |
179.7 |
| N1 |
C6 |
C5 |
C4 |
179.7 |
180.0 |
| C6 |
C5 |
C4 |
C3 |
359.9 |
360.0 |
| C6 |
C5 |
C4 |
H4 |
179.9 |
179.7 |
| N1 |
C6 |
C5 |
C7 |
179.5 |
179.9 |
| N1 |
C6 |
C7 |
C5 |
180.5 |
180.1 |
| C7 |
C6 |
C5 |
H5 |
180.2 |
180.1 |
| C2 |
C7 |
C6 |
H6 |
180.0 |
180.0 |
| C7 |
C2 |
N |
H2 |
39.9 |
34.7 |
| C4 |
C3 |
C2 |
C7 |
0.4 |
360.0 |
| N1 |
C6 |
C7 |
C2 |
180.5 |
180.0 |
| C6 |
C7 |
C2 |
H6 |
180.0 |
180.0 |
| N1 |
C6 |
C5 |
H5 |
359.7 |
360.0 |
| N1 |
C6 |
C7 |
H6 |
0.5 |
0.0 |
| H8 |
C8 |
C9 |
H7 |
121.7 |
121.9 |
| C10 |
C9 |
C8 |
H8 |
217.6 |
215.4 |
| C10 |
C9 |
C8 |
H7 |
95.9 |
93.5 |
| C11 |
C10 |
C9 |
H12 |
240.8 |
118.7 |
| C11 |
C10 |
C9 |
H11 |
119.2 |
241.2 |
| H12 |
C10 |
C9 |
H11 |
238.3 |
122.5 |
| H10 |
C9 |
C10 |
H9 |
121.7 |
123.8 |
| C9 |
C10 |
C11 |
H12 |
119.2 |
241.3 |
| C9 |
C10 |
C11 |
H11 |
240.8 |
118.8 |
| C11 |
C10 |
C9 |
H10 |
267.6 |
266.7 |
| C11 |
C10 |
C9 |
H9 |
146.0 |
142.9 |
| H12 |
C10 |
C11 |
H11 |
121.7 |
237.4 |
| O1 |
C11 |
C10 |
H12 |
39.2 |
282.5 |
| O1 |
C11 |
C10 |
H11 |
277.6 |
45.0 |
| H4 |
C4 |
C3 |
C2 |
179.8 |
180.3 |
| C5 |
C4 |
H4 |
C3 |
180.0 |
180.3 |
| H4 |
C4 |
C3 |
H3 |
359.8 |
360.0 |
| H5 |
C5 |
C4 |
C3 |
179.9 |
180.0 |
| H5 |
C5 |
C4 |
H4 |
360.0 |
359.7 |
| H6 |
C7 |
C2 |
N |
0.9 |
360.0 |
| C6 |
C7 |
H6 |
C2 |
180.0 |
180.0 |
| C9 |
C8 |
H8 |
H7 |
237.4 |
238.1 |
| C9 |
C8 |
H7 |
H8 |
122.6 |
121.9 |
| C11 |
C10 |
H12 |
C9 |
115.2 |
245.2 |
| C9 |
C10 |
H12 |
H11 |
122.4 |
237.5 |
| H12 |
C10 |
C9 |
H10 |
26.8 |
148.0 |
| H12 |
C10 |
C9 |
H9 |
265.1 |
24.2 |
| C11 |
C10 |
H12 |
H11 |
237.6 |
122.7 |
| C11 |
C10 |
H11 |
C9 |
244.8 |
114.9 |
| C9 |
C10 |
H11 |
H12 |
237.6 |
122.5 |
| H11 |
C10 |
C9 |
H10 |
148.4 |
25.6 |
| H11 |
C10 |
C9 |
H9 |
26.8 |
261.8 |
| C11 |
C10 |
H11 |
H12 |
122.4 |
237.4 |
| H2 |
N |
C1 |
C |
22.1 |
5.5 |
| H2 |
N |
C1 |
O |
202.4 |
185.4 |
| C1 |
C |
H |
H13 |
120.0 |
120.1 |
| C1 |
C |
H |
H1 |
240.0 |
240.0 |
| H13 |
C |
H |
H1 |
120.0 |
119.9 |
| C1 |
C |
H13 |
H |
240.0 |
239.9 |
| C1 |
C |
H13 |
H1 |
120.0 |
120.0 |
| H |
C |
H13 |
H1 |
240.0 |
240.1 |
| C1 |
C |
H1 |
H |
120.0 |
120.1 |
| C1 |
C |
H1 |
H13 |
240.0 |
240.0 |
| H |
C |
H1 |
H13 |
120.0 |
119.9 |
| C4 |
C3 |
H3 |
C2 |
180.0 |
180.3 |
| H3 |
C3 |
C4 |
H4 |
359.8 |
360.0 |
| H10 |
C9 |
C8 |
H8 |
336.8 |
333.4 |
| H10 |
C9 |
C8 |
H7 |
215.0 |
211.5 |
| H10 |
C9 |
C10 |
H12 |
26.8 |
148.0 |
| H10 |
C9 |
C10 |
H11 |
148.4 |
25.6 |
| C10 |
C9 |
H10 |
H9 |
237.6 |
236.2 |
| H9 |
C9 |
C8 |
H8 |
98.5 |
97.3 |
| H9 |
C9 |
C8 |
H7 |
336.7 |
335.4 |
| H9 |
C9 |
C10 |
H12 |
265.1 |
24.2 |
| H9 |
C9 |
C10 |
H11 |
26.8 |
261.8 |
| C10 |
C9 |
H9 |
H10 |
122.4 |
123.8 |