Atom Nomenclature for T7V

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T7V

Atom Name (V3) Atom Name (V2)
C10 C1
C01 C2
C02 C3
C04 C4
C06 C5
C08 C6
C09 C7
C11 C8
C12 C9
C14 C10
N03 N1
O05 O1
CL13 CL1
H101 H1
H012 H2
H011 H3
H013 H4
H021 H5
H1 H6
H062 H7
H061 H8
H091 H9
H111 H10
H141 H11
H031 H12