PDB Chemical Component T7S
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T7S
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C |
1.507 |
1.507 |
C1 |
O |
1.226 |
1.213 |
N |
C1 |
1.355 |
1.348 |
C2 |
N |
1.470 |
1.469 |
C3 |
C2 |
1.516 |
1.531 |
C4 |
C3 |
1.534 |
1.531 |
C4 |
C5 |
1.520 |
1.530 |
C5 |
C6 |
1.509 |
1.532 |
C6 |
N |
1.467 |
1.470 |
C7 |
C4 |
1.513 |
1.508 |
O1 |
C7 |
1.229 |
1.213 |
C7 |
N1 |
1.375 |
1.347 |
N1 |
C8 |
1.468 |
1.469 |
C9 |
C8 |
1.512 |
1.531 |
C10 |
C9 |
1.516 |
1.531 |
C11 |
C10 |
1.519 |
1.530 |
C12 |
C11 |
1.520 |
1.532 |
N1 |
C12 |
1.470 |
1.469 |
C4 |
H6 |
1.100 |
1.089 |
C5 |
H7 |
1.100 |
1.090 |
C5 |
H8 |
1.100 |
1.090 |
C6 |
H9 |
1.100 |
1.089 |
C6 |
H10 |
1.100 |
1.090 |
C8 |
H12 |
1.099 |
1.091 |
C8 |
H11 |
1.100 |
1.090 |
C10 |
H15 |
1.100 |
1.090 |
C10 |
H16 |
1.100 |
1.090 |
C |
H |
1.100 |
1.091 |
C |
H21 |
1.100 |
1.090 |
C |
H1 |
1.100 |
1.089 |
C11 |
H18 |
1.099 |
1.091 |
C11 |
H17 |
1.100 |
1.090 |
C12 |
H20 |
1.100 |
1.090 |
C12 |
H19 |
1.100 |
1.091 |
C2 |
H2 |
1.100 |
1.090 |
C2 |
H3 |
1.100 |
1.091 |
C3 |
H4 |
1.100 |
1.090 |
C3 |
H5 |
1.100 |
1.090 |
C9 |
H14 |
1.100 |
1.090 |
C9 |
H13 |
1.100 |
1.091 |
Bond Angles for T7S
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N |
C1 |
C |
118.6 |
120.0 |
C1 |
C |
H |
109.5 |
109.4 |
C1 |
C |
H21 |
109.5 |
109.5 |
C1 |
C |
H1 |
109.5 |
109.5 |
N |
C1 |
O |
122.2 |
120.0 |
C6 |
N |
C1 |
120.6 |
120.6 |
C4 |
C3 |
C2 |
110.6 |
109.3 |
C3 |
C2 |
H2 |
109.3 |
109.6 |
C3 |
C2 |
H3 |
109.3 |
109.7 |
C5 |
C4 |
C3 |
109.6 |
109.5 |
C7 |
C4 |
C3 |
112.6 |
109.5 |
C3 |
C4 |
H6 |
107.6 |
109.5 |
C4 |
C3 |
H4 |
109.2 |
109.5 |
C4 |
C3 |
H5 |
109.2 |
109.5 |
C4 |
C5 |
C6 |
110.2 |
109.3 |
C5 |
C4 |
H6 |
107.8 |
109.5 |
C4 |
C5 |
H7 |
109.3 |
109.5 |
C4 |
C5 |
H8 |
109.3 |
109.5 |
C5 |
C6 |
N |
109.5 |
108.7 |
C6 |
C5 |
H7 |
109.3 |
109.4 |
C6 |
C5 |
H8 |
109.3 |
109.5 |
C5 |
C6 |
H9 |
109.5 |
109.6 |
C5 |
C6 |
H10 |
109.5 |
109.6 |
N |
C6 |
H9 |
109.5 |
109.6 |
N |
C6 |
H10 |
109.5 |
109.5 |
C7 |
C4 |
H6 |
107.9 |
109.4 |
C7 |
N1 |
C8 |
125.4 |
120.6 |
C7 |
N1 |
C12 |
122.1 |
120.6 |
C8 |
N1 |
C12 |
112.4 |
118.7 |
N1 |
C8 |
H12 |
109.1 |
109.6 |
N1 |
C8 |
H11 |
109.0 |
109.5 |
C9 |
C8 |
H12 |
109.1 |
109.6 |
C9 |
C8 |
H11 |
109.1 |
109.7 |
C11 |
C10 |
C9 |
109.6 |
109.5 |
C9 |
C10 |
H15 |
109.4 |
109.5 |
C9 |
C10 |
H16 |
109.4 |
109.5 |
C10 |
C9 |
H14 |
109.4 |
109.5 |
C10 |
C9 |
H13 |
109.4 |
109.5 |
C11 |
C10 |
H15 |
109.5 |
109.5 |
C11 |
C10 |
H16 |
109.5 |
109.4 |
N1 |
C12 |
C11 |
112.0 |
108.8 |
C12 |
C11 |
H18 |
108.8 |
109.5 |
C12 |
C11 |
H17 |
108.9 |
109.5 |
N1 |
C12 |
H20 |
108.8 |
109.6 |
N1 |
C12 |
H19 |
108.8 |
109.6 |
H7 |
C5 |
H8 |
109.5 |
109.5 |
H9 |
C6 |
H10 |
109.4 |
109.7 |
H12 |
C8 |
H11 |
109.5 |
109.6 |
H15 |
C10 |
H16 |
109.5 |
109.5 |
H |
C |
H21 |
109.5 |
109.5 |
H |
C |
H1 |
109.5 |
109.5 |
H21 |
C |
H1 |
109.5 |
109.5 |
H18 |
C11 |
H17 |
109.5 |
109.4 |
H20 |
C12 |
H19 |
109.5 |
109.7 |
H2 |
C2 |
H3 |
109.5 |
109.5 |
H4 |
C3 |
H5 |
109.4 |
109.5 |
H14 |
C9 |
H13 |
109.5 |
109.5 |
Torsion Angles for T7S
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N |
C1 |
C |
O |
179.8 |
180.0 |
C6 |
N |
C1 |
C |
181.7 |
5.0 |
H |
C |
C1 |
H21 |
240.0 |
240.0 |
H |
C |
C1 |
H1 |
120.0 |
120.0 |
H21 |
C |
C1 |
H1 |
240.0 |
240.0 |
N |
C1 |
O |
C |
180.2 |
180.0 |
O |
C1 |
C |
H |
0.0 |
174.7 |
O |
C1 |
C |
H21 |
120.0 |
294.7 |
O |
C1 |
C |
H1 |
240.0 |
54.7 |
C6 |
N |
C1 |
O |
1.5 |
185.0 |
N |
C1 |
C |
H |
179.8 |
354.7 |
N |
C1 |
C |
H21 |
299.8 |
114.7 |
N |
C1 |
C |
H1 |
59.8 |
234.7 |
C5 |
C6 |
N |
C1 |
243.1 |
233.6 |
C1 |
N |
C6 |
H9 |
123.1 |
113.8 |
C1 |
N |
C6 |
H10 |
3.1 |
353.3 |
C4 |
C3 |
C2 |
N |
55.7 |
54.7 |
C2 |
N |
C6 |
H9 |
300.6 |
293.9 |
C2 |
N |
C6 |
H10 |
180.6 |
173.4 |
C5 |
C4 |
C3 |
C2 |
304.9 |
298.6 |
C7 |
C4 |
C3 |
C2 |
180.7 |
178.6 |
C2 |
C3 |
C4 |
H6 |
61.9 |
58.7 |
C4 |
C3 |
C2 |
H4 |
239.8 |
119.9 |
C4 |
C3 |
C2 |
H5 |
120.2 |
240.0 |
H2 |
C2 |
C3 |
H3 |
119.8 |
120.3 |
C4 |
C3 |
C2 |
H2 |
295.6 |
294.8 |
C4 |
C3 |
C2 |
H3 |
175.8 |
174.5 |
C3 |
C4 |
C5 |
C6 |
56.7 |
61.4 |
C5 |
C4 |
C3 |
H6 |
243.0 |
239.9 |
C3 |
C4 |
C5 |
H7 |
176.8 |
181.3 |
C3 |
C4 |
C5 |
H8 |
296.5 |
301.4 |
C7 |
C4 |
C3 |
H6 |
118.8 |
119.9 |
H4 |
C3 |
C4 |
H5 |
119.6 |
239.9 |
C7 |
C4 |
C5 |
C3 |
125.1 |
120.0 |
C3 |
C4 |
C5 |
H6 |
116.9 |
120.1 |
C5 |
C4 |
C3 |
H4 |
184.7 |
58.6 |
C5 |
C4 |
C3 |
H5 |
65.1 |
178.6 |
C4 |
C5 |
C6 |
N |
301.1 |
305.3 |
C6 |
C5 |
C4 |
H7 |
239.9 |
240.1 |
C6 |
C5 |
C4 |
H8 |
120.1 |
120.0 |
C4 |
C5 |
C6 |
H9 |
61.1 |
65.1 |
C4 |
C5 |
C6 |
H10 |
181.1 |
185.6 |
C7 |
C4 |
C5 |
H6 |
242.0 |
240.1 |
H7 |
C5 |
C4 |
H8 |
240.2 |
239.9 |
C6 |
C5 |
C4 |
C3 |
56.7 |
61.4 |
C6 |
C5 |
C4 |
H6 |
299.8 |
301.3 |
C4 |
C5 |
C6 |
H7 |
120.1 |
120.0 |
C4 |
C5 |
C6 |
H8 |
239.9 |
240.0 |
N |
C6 |
C5 |
H9 |
240.0 |
240.2 |
N |
C6 |
C5 |
H10 |
120.0 |
119.7 |
H7 |
C5 |
C6 |
H8 |
119.8 |
120.0 |
H9 |
C6 |
C5 |
H10 |
240.1 |
239.5 |
N |
C6 |
C5 |
H7 |
181.0 |
185.4 |
N |
C6 |
C5 |
H8 |
61.2 |
65.4 |
C5 |
C6 |
N |
H9 |
120.0 |
119.8 |
C5 |
C6 |
N |
H10 |
240.0 |
240.3 |
H9 |
C6 |
N |
H10 |
119.9 |
120.5 |
C5 |
C4 |
C7 |
C3 |
236.6 |
239.9 |
C3 |
C4 |
C7 |
H6 |
241.4 |
240.0 |
C7 |
C4 |
C3 |
H4 |
60.5 |
298.6 |
C7 |
C4 |
C3 |
H5 |
300.9 |
58.6 |
C5 |
C4 |
C7 |
H6 |
118.0 |
119.9 |
C7 |
C4 |
C5 |
H7 |
301.9 |
301.3 |
C7 |
C4 |
C5 |
H8 |
61.6 |
61.4 |
C4 |
C7 |
N1 |
C8 |
16.5 |
174.5 |
C4 |
C7 |
N1 |
C12 |
193.9 |
354.2 |
O1 |
C7 |
C4 |
H6 |
188.4 |
154.6 |
C8 |
N1 |
C7 |
C12 |
182.6 |
180.3 |
C7 |
N1 |
C8 |
H12 |
355.2 |
245.9 |
C7 |
N1 |
C8 |
H11 |
114.7 |
6.1 |
C7 |
N1 |
C12 |
C11 |
129.1 |
233.9 |
C7 |
N1 |
C12 |
H20 |
8.7 |
353.7 |
C7 |
N1 |
C12 |
H19 |
249.4 |
114.1 |
C7 |
N1 |
C8 |
C12 |
177.6 |
179.7 |
C9 |
C8 |
N1 |
H12 |
239.8 |
240.2 |
C9 |
C8 |
N1 |
H11 |
120.2 |
119.9 |
C8 |
N1 |
C12 |
C11 |
306.8 |
53.6 |
C8 |
N1 |
C12 |
H20 |
186.4 |
173.3 |
C8 |
N1 |
C12 |
H19 |
67.1 |
293.8 |
H12 |
C8 |
N1 |
H11 |
240.5 |
239.7 |
N1 |
C8 |
C9 |
H12 |
120.2 |
119.8 |
N1 |
C8 |
C9 |
H11 |
239.8 |
240.2 |
H12 |
C8 |
C9 |
H11 |
119.5 |
120.4 |
C10 |
C9 |
C8 |
H12 |
180.4 |
294.9 |
C10 |
C9 |
C8 |
H11 |
60.9 |
174.5 |
C11 |
C10 |
C9 |
H15 |
240.0 |
120.0 |
C11 |
C10 |
C9 |
H16 |
120.0 |
240.0 |
H15 |
C10 |
C9 |
H16 |
240.0 |
120.0 |
H14 |
C9 |
C10 |
H13 |
119.9 |
120.1 |
C9 |
C10 |
C11 |
H15 |
120.0 |
240.0 |
C9 |
C10 |
C11 |
H16 |
240.0 |
120.0 |
C11 |
C10 |
C9 |
H14 |
297.1 |
178.7 |
C11 |
C10 |
C9 |
H13 |
177.2 |
58.6 |
N1 |
C12 |
C11 |
C10 |
51.8 |
305.4 |
H15 |
C10 |
C11 |
H16 |
120.0 |
240.0 |
C12 |
C11 |
C10 |
C9 |
306.2 |
61.3 |
C12 |
C11 |
C10 |
H15 |
186.2 |
181.3 |
C12 |
C11 |
C10 |
H16 |
66.2 |
301.3 |
N1 |
C12 |
C11 |
H20 |
239.6 |
119.8 |
N1 |
C12 |
C11 |
H19 |
120.4 |
240.2 |
H18 |
C11 |
C12 |
H17 |
119.2 |
120.0 |
C7 |
N1 |
C12 |
C8 |
182.3 |
180.3 |
C12 |
N1 |
C8 |
H12 |
177.6 |
66.2 |
C12 |
N1 |
C8 |
H11 |
297.1 |
186.5 |
N1 |
C12 |
C11 |
H18 |
291.4 |
185.4 |
N1 |
C12 |
C11 |
H17 |
172.2 |
65.4 |
H20 |
C12 |
N1 |
H19 |
119.3 |
239.5 |
H6 |
C4 |
C3 |
C2 |
61.9 |
58.7 |
C5 |
C4 |
H6 |
C3 |
118.2 |
120.1 |
C7 |
C4 |
H6 |
C3 |
238.2 |
240.0 |
H6 |
C4 |
C3 |
H4 |
301.7 |
178.6 |
H6 |
C4 |
C3 |
H5 |
182.1 |
298.7 |
H6 |
C4 |
C5 |
C6 |
299.8 |
301.3 |
H6 |
C4 |
C5 |
H7 |
59.9 |
61.2 |
H6 |
C4 |
C5 |
H8 |
179.6 |
181.3 |
H7 |
C5 |
C4 |
C3 |
176.8 |
181.3 |
C4 |
C5 |
H7 |
C6 |
239.3 |
240.2 |
H7 |
C5 |
C4 |
H6 |
59.9 |
61.2 |
C4 |
C5 |
H7 |
H8 |
119.7 |
120.1 |
H7 |
C5 |
C6 |
N |
181.0 |
185.4 |
C6 |
C5 |
H7 |
H8 |
240.3 |
240.0 |
H7 |
C5 |
C6 |
H9 |
301.0 |
305.2 |
H7 |
C5 |
C6 |
H10 |
61.0 |
65.7 |
H8 |
C5 |
C4 |
C3 |
296.5 |
301.4 |
C4 |
C5 |
H8 |
C6 |
120.7 |
119.9 |
H8 |
C5 |
C4 |
H6 |
179.6 |
181.3 |
C4 |
C5 |
H8 |
H7 |
240.3 |
239.9 |
H8 |
C5 |
C6 |
N |
61.2 |
65.4 |
C6 |
C5 |
H8 |
H7 |
119.7 |
120.0 |
H8 |
C5 |
C6 |
H9 |
181.2 |
185.1 |
H8 |
C5 |
C6 |
H10 |
301.2 |
305.6 |
H9 |
C6 |
N |
C1 |
123.1 |
113.8 |
C5 |
C6 |
H9 |
N |
239.9 |
240.7 |
H9 |
C6 |
C5 |
H7 |
301.0 |
305.2 |
H9 |
C6 |
C5 |
H8 |
181.2 |
185.1 |
C5 |
C6 |
H9 |
H10 |
120.0 |
120.4 |
N |
C6 |
H9 |
H10 |
240.0 |
239.7 |
H10 |
C6 |
N |
C1 |
3.1 |
353.3 |
C5 |
C6 |
H10 |
N |
120.1 |
119.2 |
H10 |
C6 |
C5 |
H7 |
61.0 |
65.7 |
H10 |
C6 |
C5 |
H8 |
301.2 |
305.6 |
C5 |
C6 |
H10 |
H9 |
240.0 |
239.6 |
N |
C6 |
H10 |
H9 |
120.0 |
120.4 |
H12 |
C8 |
N1 |
C12 |
177.6 |
66.2 |
N1 |
C8 |
H12 |
H11 |
119.2 |
120.2 |
C9 |
C8 |
H12 |
H11 |
240.7 |
239.5 |
H11 |
C8 |
N1 |
C12 |
297.1 |
186.5 |
N1 |
C8 |
H11 |
H12 |
240.8 |
239.8 |
C9 |
C8 |
H11 |
H12 |
119.3 |
120.4 |
C11 |
C10 |
H15 |
C9 |
120.1 |
240.0 |
C9 |
C10 |
H15 |
H16 |
119.9 |
240.0 |
H15 |
C10 |
C9 |
H14 |
57.1 |
58.7 |
H15 |
C10 |
C9 |
H13 |
297.2 |
298.6 |
C11 |
C10 |
H15 |
H16 |
240.0 |
120.0 |
C11 |
C10 |
H16 |
C9 |
239.9 |
120.0 |
C9 |
C10 |
H16 |
H15 |
240.1 |
120.0 |
H16 |
C10 |
C9 |
H14 |
177.1 |
298.7 |
H16 |
C10 |
C9 |
H13 |
57.2 |
178.6 |
C11 |
C10 |
H16 |
H15 |
120.0 |
240.0 |
C1 |
C |
H |
H21 |
120.0 |
120.0 |
C1 |
C |
H |
H1 |
240.0 |
240.0 |
H21 |
C |
H |
H1 |
120.0 |
120.0 |
C1 |
C |
H21 |
H |
240.0 |
240.0 |
C1 |
C |
H21 |
H1 |
120.0 |
120.0 |
H |
C |
H21 |
H1 |
240.0 |
240.0 |
C1 |
C |
H1 |
H |
120.0 |
120.0 |
C1 |
C |
H1 |
H21 |
240.0 |
239.9 |
H |
C |
H1 |
H21 |
120.0 |
120.0 |
H18 |
C11 |
C10 |
C9 |
66.6 |
181.4 |
H18 |
C11 |
C10 |
H15 |
306.6 |
301.4 |
H18 |
C11 |
C10 |
H16 |
186.6 |
61.4 |
C12 |
C11 |
H18 |
H17 |
241.1 |
240.0 |
H17 |
C11 |
C10 |
C9 |
185.8 |
301.4 |
H17 |
C11 |
C10 |
H15 |
65.8 |
61.4 |
H17 |
C11 |
C10 |
H16 |
305.8 |
181.4 |
C12 |
C11 |
H17 |
H18 |
118.8 |
120.1 |
N1 |
C12 |
H20 |
C11 |
122.3 |
240.7 |
H20 |
C12 |
C11 |
H18 |
51.8 |
65.6 |
H20 |
C12 |
C11 |
H17 |
292.5 |
305.6 |
N1 |
C12 |
H20 |
H19 |
241.2 |
120.4 |
N1 |
C12 |
H19 |
C11 |
237.7 |
119.3 |
H19 |
C12 |
C11 |
H18 |
171.0 |
305.1 |
H19 |
C12 |
C11 |
H17 |
51.8 |
185.1 |
N1 |
C12 |
H19 |
H20 |
118.8 |
239.6 |
C3 |
C2 |
H2 |
H3 |
240.3 |
239.6 |
C3 |
C2 |
H3 |
H2 |
119.7 |
120.3 |
C4 |
C3 |
H4 |
C2 |
121.0 |
240.2 |
H4 |
C3 |
C2 |
H2 |
55.8 |
174.9 |
H4 |
C3 |
C2 |
H3 |
296.0 |
54.6 |
H4 |
C3 |
C4 |
H6 |
301.7 |
178.6 |
C4 |
C3 |
H4 |
H5 |
240.5 |
120.1 |
C4 |
C3 |
H5 |
C2 |
239.0 |
119.8 |
H5 |
C3 |
C2 |
H2 |
175.4 |
54.8 |
H5 |
C3 |
C2 |
H3 |
55.6 |
294.5 |
H5 |
C3 |
C4 |
H6 |
182.1 |
298.7 |
C4 |
C3 |
H5 |
H4 |
119.5 |
240.0 |
H14 |
C9 |
C8 |
H12 |
300.5 |
54.8 |
H14 |
C9 |
C8 |
H11 |
180.9 |
294.4 |
H14 |
C9 |
C10 |
H15 |
57.1 |
58.7 |
H14 |
C9 |
C10 |
H16 |
177.1 |
298.7 |
C10 |
C9 |
H14 |
H13 |
240.2 |
239.9 |
H13 |
C9 |
C8 |
H12 |
60.4 |
174.9 |
H13 |
C9 |
C8 |
H11 |
300.8 |
54.5 |
H13 |
C9 |
C10 |
H15 |
297.2 |
298.6 |
H13 |
C9 |
C10 |
H16 |
57.2 |
178.6 |
C10 |
C9 |
H13 |
H14 |
119.8 |
120.1 |