PDB Chemical Component T7J
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T7J
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C01 |
C02 |
1.485 |
1.507 |
| C02 |
C03 |
1.380 |
1.383 |
| C03 |
C04 |
1.378 |
1.381 |
| C04 |
C05 |
1.392 |
1.389 |
| C07 |
O08 |
1.222 |
1.212 |
| C07 |
C09 |
1.512 |
1.507 |
| N06 |
C07 |
1.363 |
1.347 |
| N06 |
C11 |
1.457 |
1.465 |
| C11 |
C12 |
1.524 |
1.496 |
| C12 |
C13 |
1.327 |
1.303 |
| C13 |
S14 |
1.745 |
1.778 |
| S14 |
O15 |
1.439 |
1.421 |
| S14 |
O16 |
1.438 |
1.422 |
| S14 |
C17 |
1.781 |
1.838 |
| C05 |
N06 |
1.430 |
1.400 |
| C05 |
C18 |
1.394 |
1.389 |
| C18 |
C19 |
1.381 |
1.382 |
| C02 |
C19 |
1.386 |
1.383 |
| C11 |
C17 |
1.534 |
1.546 |
| C13 |
H131 |
1.080 |
1.080 |
| C17 |
H171 |
1.099 |
1.090 |
| C17 |
H172 |
1.100 |
1.090 |
| C01 |
H013 |
1.100 |
1.091 |
| C01 |
H012 |
1.100 |
1.089 |
| C01 |
H011 |
1.100 |
1.089 |
| C03 |
H031 |
1.080 |
1.080 |
| C04 |
H041 |
1.080 |
1.081 |
| C09 |
H091 |
1.100 |
1.090 |
| C09 |
H1 |
1.100 |
1.091 |
| C09 |
H092 |
1.100 |
1.090 |
| C11 |
H111 |
1.100 |
1.090 |
| C12 |
H121 |
1.080 |
1.081 |
| C18 |
H181 |
1.080 |
1.079 |
| C19 |
H191 |
1.080 |
1.080 |
Bond Angles for T7J
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C01 |
C02 |
C03 |
120.0 |
119.9 |
| C01 |
C02 |
C19 |
121.3 |
119.9 |
| C02 |
C01 |
H013 |
109.5 |
109.5 |
| C02 |
C01 |
H012 |
109.5 |
109.5 |
| C02 |
C01 |
H011 |
109.5 |
109.5 |
| C02 |
C03 |
C04 |
121.3 |
120.1 |
| C03 |
C02 |
C19 |
118.7 |
120.2 |
| C02 |
C03 |
H031 |
119.3 |
120.0 |
| C03 |
C04 |
C05 |
119.6 |
119.9 |
| C04 |
C03 |
H031 |
119.3 |
119.9 |
| C03 |
C04 |
H041 |
120.2 |
120.0 |
| C04 |
C05 |
N06 |
119.6 |
120.1 |
| C04 |
C05 |
C18 |
119.8 |
119.9 |
| C05 |
C04 |
H041 |
120.2 |
120.0 |
| C09 |
C07 |
O08 |
121.6 |
120.0 |
| N06 |
C07 |
O08 |
121.8 |
120.0 |
| C07 |
C09 |
H091 |
109.5 |
109.4 |
| C07 |
C09 |
H1 |
109.5 |
109.5 |
| C07 |
C09 |
H092 |
109.5 |
109.5 |
| C05 |
N06 |
C07 |
120.0 |
120.0 |
| C05 |
N06 |
C11 |
118.1 |
120.0 |
| N06 |
C11 |
H111 |
110.0 |
109.4 |
| C12 |
C11 |
H111 |
109.1 |
109.4 |
| C11 |
C12 |
H121 |
122.4 |
120.4 |
| C12 |
C13 |
S14 |
111.9 |
107.5 |
| C12 |
C13 |
H131 |
124.1 |
126.3 |
| C13 |
S14 |
O15 |
110.8 |
105.6 |
| C13 |
S14 |
O16 |
110.0 |
105.6 |
| C13 |
S14 |
C17 |
94.7 |
97.0 |
| S14 |
C13 |
H131 |
124.1 |
126.2 |
| S14 |
C17 |
H171 |
110.5 |
111.6 |
| S14 |
C17 |
H172 |
110.5 |
111.0 |
| C18 |
C05 |
N06 |
120.6 |
120.0 |
| C05 |
C18 |
C19 |
119.3 |
119.9 |
| C05 |
C18 |
H181 |
120.4 |
120.1 |
| C02 |
C19 |
C18 |
121.3 |
120.1 |
| C19 |
C18 |
H181 |
120.3 |
120.0 |
| C18 |
C19 |
H191 |
119.4 |
120.0 |
| C02 |
C19 |
H191 |
119.4 |
120.0 |
| C11 |
C17 |
H171 |
110.5 |
111.3 |
| C11 |
C17 |
H172 |
110.5 |
111.3 |
| H171 |
C17 |
H172 |
109.5 |
111.2 |
| H013 |
C01 |
H012 |
109.5 |
109.5 |
| H013 |
C01 |
H011 |
109.4 |
109.4 |
| H012 |
C01 |
H011 |
109.5 |
109.5 |
| H091 |
C09 |
H1 |
109.5 |
109.4 |
| H091 |
C09 |
H092 |
109.4 |
109.5 |
| H1 |
C09 |
H092 |
109.5 |
109.5 |
Torsion Angles for T7J
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C01 |
C02 |
C03 |
C04 |
180.5 |
180.0 |
| C03 |
C02 |
C01 |
C19 |
179.4 |
180.3 |
| C01 |
C02 |
C03 |
H031 |
0.5 |
359.9 |
| C01 |
C02 |
C19 |
C18 |
180.3 |
179.7 |
| C01 |
C02 |
C19 |
H191 |
0.3 |
0.1 |
| H013 |
C01 |
C02 |
H012 |
240.0 |
240.0 |
| H013 |
C01 |
C02 |
H011 |
120.0 |
119.9 |
| H012 |
C01 |
C02 |
H011 |
240.0 |
239.9 |
| C01 |
C02 |
C03 |
C19 |
180.6 |
179.7 |
| C03 |
C02 |
C01 |
H013 |
89.7 |
90.0 |
| C03 |
C02 |
C01 |
H012 |
209.7 |
210.0 |
| C03 |
C02 |
C01 |
H011 |
329.7 |
330.0 |
| C02 |
C03 |
C04 |
C05 |
359.9 |
360.0 |
| C04 |
C03 |
C02 |
H031 |
180.0 |
180.0 |
| C02 |
C03 |
C04 |
H041 |
179.9 |
180.0 |
| C03 |
C02 |
C19 |
C18 |
0.9 |
359.5 |
| C03 |
C02 |
C19 |
H191 |
180.9 |
179.8 |
| C04 |
C03 |
C02 |
C19 |
359.9 |
0.3 |
| C02 |
C03 |
C04 |
H031 |
180.0 |
180.0 |
| C03 |
C04 |
C05 |
N06 |
180.7 |
180.0 |
| C03 |
C04 |
C05 |
C18 |
359.6 |
0.0 |
| C05 |
C04 |
C03 |
H041 |
180.0 |
180.0 |
| C05 |
C04 |
C03 |
H031 |
179.9 |
180.0 |
| C03 |
C04 |
C05 |
H041 |
180.0 |
180.0 |
| C04 |
C05 |
N06 |
C07 |
239.3 |
57.9 |
| C04 |
C05 |
N06 |
C11 |
59.1 |
237.9 |
| C18 |
C05 |
C04 |
N06 |
178.9 |
180.0 |
| C04 |
C05 |
C18 |
C19 |
1.1 |
359.7 |
| C04 |
C05 |
C18 |
H181 |
181.1 |
180.0 |
| O08 |
C07 |
C09 |
H091 |
360.0 |
95.2 |
| O08 |
C07 |
C09 |
H1 |
120.0 |
215.1 |
| O08 |
C07 |
C09 |
H092 |
240.0 |
335.2 |
| C05 |
N06 |
C07 |
O08 |
165.5 |
184.6 |
| N06 |
C07 |
C09 |
O08 |
180.8 |
179.9 |
| C05 |
N06 |
C07 |
C09 |
344.7 |
4.7 |
| H091 |
C09 |
C07 |
H1 |
240.0 |
240.1 |
| H091 |
C09 |
C07 |
H092 |
120.0 |
120.0 |
| H1 |
C09 |
C07 |
H092 |
240.0 |
240.0 |
| C09 |
C07 |
N06 |
O08 |
179.2 |
180.1 |
| N06 |
C07 |
C09 |
H091 |
180.8 |
275.1 |
| N06 |
C07 |
C09 |
H1 |
300.8 |
35.1 |
| N06 |
C07 |
C09 |
H092 |
60.8 |
155.1 |
| C05 |
N06 |
C07 |
C11 |
179.8 |
180.0 |
| C18 |
C05 |
N06 |
C07 |
60.4 |
237.9 |
| C11 |
N06 |
C07 |
O08 |
345.7 |
4.6 |
| C05 |
N06 |
C11 |
C07 |
180.2 |
180.0 |
| C12 |
C11 |
N06 |
H111 |
240.1 |
240.2 |
| N06 |
C11 |
C12 |
H121 |
39.6 |
41.3 |
| C18 |
C05 |
N06 |
C11 |
240.2 |
57.9 |
| N06 |
C11 |
C17 |
H171 |
25.6 |
263.0 |
| N06 |
C11 |
C17 |
H172 |
264.2 |
27.7 |
| C05 |
N06 |
C11 |
C12 |
33.3 |
236.6 |
| N06 |
C11 |
C12 |
H111 |
120.5 |
119.8 |
| C11 |
C12 |
C13 |
S14 |
3.0 |
0.3 |
| C11 |
C12 |
C13 |
H131 |
183.0 |
180.0 |
| C12 |
C11 |
C17 |
H171 |
265.3 |
142.7 |
| C12 |
C11 |
C17 |
H172 |
143.9 |
267.4 |
| C12 |
C13 |
S14 |
O15 |
257.5 |
259.3 |
| C12 |
C13 |
S14 |
O16 |
125.7 |
128.9 |
| C12 |
C13 |
S14 |
C17 |
11.2 |
14.1 |
| S14 |
C13 |
C12 |
H131 |
180.0 |
180.3 |
| C12 |
C13 |
S14 |
H131 |
180.0 |
179.7 |
| C13 |
S14 |
C17 |
H171 |
98.4 |
220.0 |
| C13 |
S14 |
C17 |
H172 |
219.9 |
95.4 |
| C13 |
S14 |
O15 |
O16 |
232.3 |
239.8 |
| C13 |
S14 |
O15 |
C17 |
103.5 |
104.2 |
| O15 |
S14 |
C13 |
H131 |
77.5 |
79.6 |
| O15 |
S14 |
C17 |
H171 |
212.7 |
329.9 |
| O15 |
S14 |
C17 |
H172 |
334.1 |
205.2 |
| C13 |
S14 |
O16 |
O15 |
128.1 |
120.2 |
| C13 |
S14 |
O16 |
C17 |
256.5 |
255.8 |
| O16 |
S14 |
C13 |
H131 |
305.8 |
309.2 |
| O16 |
S14 |
C17 |
H171 |
344.9 |
110.2 |
| O16 |
S14 |
C17 |
H172 |
106.3 |
345.5 |
| C13 |
S14 |
C17 |
O15 |
245.8 |
250.1 |
| C13 |
S14 |
C17 |
O16 |
113.5 |
109.8 |
| C17 |
S14 |
C13 |
H131 |
191.2 |
194.4 |
| C11 |
C17 |
S14 |
H171 |
240.7 |
117.8 |
| C11 |
C17 |
S14 |
H172 |
119.3 |
242.5 |
| H171 |
C17 |
S14 |
H172 |
238.6 |
124.7 |
| C04 |
C05 |
N06 |
C18 |
178.9 |
180.0 |
| N06 |
C05 |
C04 |
H041 |
0.7 |
0.0 |
| C05 |
N06 |
C11 |
H111 |
153.2 |
356.4 |
| N06 |
C05 |
C18 |
C19 |
180.0 |
179.7 |
| N06 |
C05 |
C18 |
H181 |
0.0 |
0.0 |
| C04 |
C05 |
C18 |
N06 |
181.1 |
180.0 |
| C18 |
C05 |
C04 |
H041 |
179.6 |
180.0 |
| C02 |
C19 |
C18 |
C05 |
358.6 |
0.5 |
| C19 |
C18 |
C05 |
H181 |
180.0 |
179.7 |
| C05 |
C18 |
C19 |
H191 |
178.6 |
180.2 |
| C19 |
C18 |
C05 |
N06 |
180.0 |
179.7 |
| C05 |
C18 |
C19 |
H181 |
180.0 |
180.3 |
| C02 |
C19 |
C18 |
H191 |
180.0 |
180.3 |
| C01 |
C02 |
C19 |
C03 |
179.4 |
180.3 |
| C19 |
C02 |
C01 |
H013 |
270.3 |
269.7 |
| C19 |
C02 |
C01 |
H012 |
30.3 |
29.7 |
| C19 |
C02 |
C01 |
H011 |
150.3 |
149.8 |
| C19 |
C02 |
C03 |
C04 |
359.9 |
0.3 |
| C19 |
C02 |
C03 |
H031 |
179.9 |
180.2 |
| C05 |
C18 |
C19 |
C02 |
358.6 |
0.5 |
| C02 |
C19 |
C18 |
H181 |
178.6 |
180.3 |
| C18 |
C19 |
C02 |
H191 |
180.0 |
179.7 |
| C13 |
S14 |
C17 |
C11 |
339.1 |
337.9 |
| S14 |
C17 |
C11 |
H171 |
119.3 |
242.0 |
| S14 |
C17 |
C11 |
H172 |
240.7 |
117.2 |
| H171 |
C17 |
C11 |
H172 |
121.4 |
235.3 |
| C12 |
C13 |
H131 |
S14 |
180.0 |
180.4 |
| H131 |
C13 |
S14 |
O15 |
77.5 |
79.6 |
| H131 |
C13 |
S14 |
O16 |
305.8 |
309.2 |
| H131 |
C13 |
S14 |
C17 |
191.2 |
194.4 |
| S14 |
C17 |
H171 |
H172 |
122.0 |
235.5 |
| C11 |
C17 |
H171 |
H172 |
238.0 |
124.8 |
| S14 |
C17 |
H172 |
H171 |
238.0 |
124.9 |
| C11 |
C17 |
H172 |
H171 |
122.0 |
235.2 |
| H013 |
C01 |
C02 |
C03 |
89.7 |
90.0 |
| H013 |
C01 |
C02 |
C19 |
270.3 |
269.7 |
| C02 |
C01 |
H013 |
H012 |
120.0 |
120.0 |
| C02 |
C01 |
H013 |
H011 |
240.0 |
240.0 |
| H012 |
C01 |
H013 |
H011 |
120.0 |
120.0 |
| H012 |
C01 |
C02 |
C03 |
209.7 |
210.0 |
| H012 |
C01 |
C02 |
C19 |
30.3 |
29.7 |
| C02 |
C01 |
H012 |
H013 |
240.0 |
240.0 |
| C02 |
C01 |
H012 |
H011 |
120.0 |
120.0 |
| H013 |
C01 |
H012 |
H011 |
240.0 |
240.0 |
| H011 |
C01 |
C02 |
C03 |
329.7 |
330.0 |
| H011 |
C01 |
C02 |
C19 |
150.3 |
149.8 |
| C02 |
C01 |
H011 |
H013 |
120.0 |
120.0 |
| C02 |
C01 |
H011 |
H012 |
240.0 |
240.0 |
| H013 |
C01 |
H011 |
H012 |
120.0 |
120.0 |
| C02 |
C03 |
H031 |
C04 |
180.0 |
180.0 |
| H031 |
C03 |
C02 |
C19 |
179.9 |
180.2 |
| H031 |
C03 |
C04 |
C05 |
179.9 |
180.0 |
| H031 |
C03 |
C04 |
H041 |
359.9 |
0.0 |
| C03 |
C04 |
H041 |
C05 |
180.0 |
180.0 |
| H041 |
C04 |
C03 |
H031 |
359.9 |
0.0 |
| H041 |
C04 |
C05 |
N06 |
0.7 |
0.0 |
| H041 |
C04 |
C05 |
C18 |
179.6 |
180.0 |
| H091 |
C09 |
C07 |
O08 |
360.0 |
95.2 |
| C07 |
C09 |
H091 |
H1 |
120.0 |
120.0 |
| C07 |
C09 |
H091 |
H092 |
240.0 |
240.0 |
| H1 |
C09 |
H091 |
H092 |
120.0 |
120.0 |
| H1 |
C09 |
C07 |
O08 |
120.0 |
215.1 |
| C07 |
C09 |
H1 |
H091 |
240.0 |
240.1 |
| C07 |
C09 |
H1 |
H092 |
120.0 |
120.0 |
| H091 |
C09 |
H1 |
H092 |
240.0 |
240.0 |
| H092 |
C09 |
C07 |
O08 |
240.0 |
335.2 |
| C07 |
C09 |
H092 |
H091 |
120.0 |
120.0 |
| C07 |
C09 |
H092 |
H1 |
240.0 |
240.0 |
| H091 |
C09 |
H092 |
H1 |
120.0 |
120.0 |
| H111 |
C11 |
C12 |
H121 |
279.1 |
281.5 |
| H111 |
C11 |
C17 |
H171 |
147.4 |
22.7 |
| H111 |
C11 |
C17 |
H172 |
26.0 |
147.4 |
| H121 |
C12 |
C11 |
H111 |
279.1 |
281.5 |
| H121 |
C12 |
C13 |
S14 |
183.0 |
180.3 |
| H121 |
C12 |
C13 |
H131 |
3.0 |
360.0 |
| H181 |
C18 |
C05 |
N06 |
0.0 |
0.0 |
| C05 |
C18 |
H181 |
C19 |
180.0 |
179.7 |
| H181 |
C18 |
C19 |
H191 |
358.6 |
360.0 |
| C02 |
C19 |
H191 |
C18 |
180.0 |
179.7 |
| H191 |
C19 |
C18 |
H181 |
358.6 |
360.0 |