Atom Nomenclature for T7J

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T7J

Atom Name (V3) Atom Name (V2)
C13 C1
C17 C2
C01 C3
C02 C4
C03 C5
C04 C6
C05 C7
C07 C8
C09 C9
C11 C10
C12 C11
C18 C12
C19 C13
N06 N1
O08 O1
O15 O2
O16 O3
S14 S1
H131 H1
H171 H2
H172 H3
H013 H4
H012 H5
H011 H6
H031 H7
H041 H8
H091 H9
H1 H10
H092 H11
H111 H12
H121 H13
H181 H14
H191 H15