PDB Chemical Component T7D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for T7D

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C	1.510	1.508
C1	O	1.224	1.213
N	C1	1.355	1.348
C2	N	1.471	1.469
C3	C2	1.526	1.532
C4	C3	1.523	1.531
C4	C5	1.522	1.531
C5	C6	1.520	1.532
C6	N	1.467	1.469
N1	C4	1.467	1.465
C7	N1	1.354	1.348
O1	C7	1.231	1.216
C7	C8	1.499	1.478
C8	C9	1.392	1.396
C10	C9	1.385	1.379
C11	C10	1.376	1.384
C12	C11	1.377	1.383
C13	C12	1.386	1.380
C8	C13	1.391	1.396
N1	H11	1.000	0.970
C4	H6	1.100	1.089
C5	H8	1.100	1.090
C5	H7	1.100	1.090
C6	H10	1.100	1.089
C6	H9	1.100	1.090
C10	H13	1.080	1.080
C13	H16	1.080	1.080
C	H	1.100	1.090
C	H17	1.100	1.089
C	H1	1.100	1.089
C11	H14	1.080	1.080
C12	H15	1.080	1.080
C2	H3	1.100	1.090
C2	H2	1.100	1.090
C3	H5	1.100	1.090
C3	H4	1.100	1.090
C9	H12	1.080	1.080

Bond Angles for T7D

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N	C1	C	118.6	120.0
C1	C	H	109.5	109.4
C1	C	H17	109.5	109.4
C1	C	H1	109.4	109.5
N	C1	O	122.1	120.0
C6	N	C1	124.5	120.6
C4	C3	C2	110.2	109.3
C3	C2	H3	109.1	109.6
C3	C2	H2	109.1	109.7
C5	C4	C3	109.4	109.5
N1	C4	C3	112.5	109.4
C3	C4	H6	108.0	109.5
C4	C3	H5	109.3	109.5
C4	C3	H4	109.3	109.5
C4	C5	C6	109.8	109.3
N1	C4	C5	110.1	109.5
C5	C4	H6	108.1	109.5
C4	C5	H8	109.4	109.5
C4	C5	H7	109.4	109.4
C5	C6	N	109.5	108.8
C6	C5	H8	109.4	109.5
C6	C5	H7	109.4	109.5
C5	C6	H10	109.5	109.6
C5	C6	H9	109.5	109.5
N	C6	H10	109.5	109.6
N	C6	H9	109.5	109.6
C4	N1	H11	119.2	120.0
N1	C4	H6	108.7	109.4
C7	N1	H11	119.1	120.0
C7	C8	C9	117.5	120.2
C7	C8	C13	123.9	120.1
C8	C9	C10	120.6	119.9
C13	C8	C9	118.6	119.7
C8	C9	H12	119.7	120.0
C11	C10	C9	120.2	120.2
C9	C10	H13	119.9	119.9
C10	C9	H12	119.7	120.1
C11	C10	H13	119.9	119.9
C13	C12	C11	120.5	120.2
C12	C11	H14	120.1	119.8
C8	C13	C12	120.3	119.9
C12	C13	H16	119.9	120.1
C13	C12	H15	119.7	119.9
C8	C13	H16	119.8	120.1
H8	C5	H7	109.5	109.5
H10	C6	H9	109.5	109.7
H	C	H17	109.5	109.5
H	C	H1	109.5	109.5
H17	C	H1	109.5	109.5
H3	C2	H2	109.5	109.6
H5	C3	H4	109.4	109.5

Torsion Angles for T7D

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N	C1	C	O	180.6	180.0
C6	N	C1	C	353.1	174.4
H	C	C1	H17	240.0	240.0
H	C	C1	H1	120.0	120.0
H17	C	C1	H1	240.0	240.0
N	C1	O	C	179.4	180.0
O	C1	C	H	360.0	184.9
O	C1	C	H17	120.0	304.9
O	C1	C	H1	240.0	64.9
C6	N	C1	O	173.7	354.4
N	C1	C	H	180.6	4.9
N	C1	C	H17	300.6	124.9
N	C1	C	H1	60.6	244.9
C5	C6	N	C1	121.0	126.4
C1	N	C6	H10	1.0	6.7
C1	N	C6	H9	241.0	246.2
C4	C3	C2	N	305.2	305.3
C2	N	C6	H10	181.4	186.6
C2	N	C6	H9	61.4	66.1
C5	C4	C3	C2	56.5	61.4
N1	C4	C3	C2	179.2	181.4
C2	C3	C4	H6	299.1	301.3
C4	C3	C2	H5	239.9	120.0
C4	C3	C2	H4	120.1	240.0
H3	C2	C3	H2	119.6	120.4
C4	C3	C2	H3	185.0	185.6
C4	C3	C2	H2	65.4	65.2
C3	C4	C5	C6	301.1	298.6
N1	C4	C3	C5	122.7	120.0
C5	C4	C3	H6	117.4	120.1
C3	C4	C5	H8	61.1	58.6
C3	C4	C5	H7	181.0	178.6
C3	C4	N1	H11	339.7	335.0
N1	C4	C3	H6	240.0	240.0
H5	C3	C4	H4	119.7	239.8
N1	C4	C5	C3	235.9	240.0
C3	C4	C5	H6	242.7	239.9
C5	C4	C3	H5	296.3	181.3
C5	C4	C3	H4	176.6	301.5
C4	C5	C6	N	59.2	54.6
C6	C5	C4	H8	239.9	240.0
C6	C5	C4	H7	120.0	120.0
C4	C5	C6	H10	179.2	174.4
C4	C5	C6	H9	299.2	294.9
C5	C4	N1	H11	102.0	95.0
N1	C4	C5	H6	118.6	120.0
H8	C5	C4	H7	240.1	240.0
C6	C5	C4	C3	301.1	298.6
N1	C4	C5	C6	177.0	178.6
C6	C5	C4	H6	58.4	58.7
C4	C5	C6	H8	120.1	120.0
C4	C5	C6	H7	240.0	240.1
N	C6	C5	H10	240.0	240.2
N	C6	C5	H9	120.0	119.8
H8	C5	C6	H7	119.9	120.1
H10	C6	C5	H9	240.0	239.6
N	C6	C5	H8	299.1	294.7
N	C6	C5	H7	179.2	174.5
C5	C6	N	H10	120.0	119.8
C5	C6	N	H9	240.0	240.3
H10	C6	N	H9	120.0	120.5
C5	C4	N1	C3	122.3	120.0
C3	C4	N1	H6	119.6	120.0
N1	C4	C3	H5	59.0	301.3
N1	C4	C3	H4	299.3	61.5
C5	C4	N1	H6	241.8	240.0
N1	C4	C5	H8	297.0	298.6
N1	C4	C5	H7	56.9	58.7
C7	N1	C4	H11	180.0	180.3
C7	N1	C4	C3	159.7	155.3
C4	N1	C7	H11	180.0	179.7
C7	N1	C4	H6	40.2	35.3
O1	C7	N1	H11	149.7	180.3
C8	C7	N1	H11	326.8	0.4
C7	C8	C9	C10	179.6	180.0
C13	C8	C7	C9	178.8	180.2
C7	C8	C9	H12	359.6	359.9
C7	C8	C13	C12	180.4	180.0
C7	C8	C13	H16	0.4	0.0
C7	C8	C9	C13	178.9	180.2
C11	C10	C9	C8	359.7	359.9
C8	C9	C10	H13	179.7	180.0
C10	C9	C8	H12	180.0	180.1
C9	C8	C13	C12	359.2	0.2
C9	C8	C13	H16	179.2	180.2
C13	C8	C9	C10	0.7	359.8
C8	C9	C10	H12	180.0	179.9
C11	C10	C9	H13	180.0	180.0
C8	C9	C10	C11	359.7	359.9
C9	C10	C11	H13	180.0	180.0
C11	C10	C9	H12	179.7	180.0
C12	C11	C10	C9	360.0	0.3
C12	C11	C10	H13	179.9	180.3
C8	C13	C12	C11	0.4	0.0
C11	C12	C13	H16	180.4	180.0
C13	C12	C11	H15	180.0	179.9
C12	C13	C8	C9	359.2	0.2
C13	C12	C11	H14	180.0	179.9
C8	C13	C12	H16	180.0	180.0
C7	C8	C13	C9	181.2	179.8
C13	C8	C9	H12	180.7	179.7
C12	C13	C8	H16	180.0	180.0
C8	C13	C12	H15	180.4	179.9
H11	N1	C4	C3	339.7	335.0
H11	N1	C4	C5	102.0	95.0
H11	N1	C4	H6	220.2	215.0
H6	C4	C3	C2	299.1	301.3
C5	C4	H6	C3	241.8	239.9
N1	C4	H6	C3	122.3	119.9
H6	C4	C3	H5	179.0	61.3
H6	C4	C3	H4	59.3	181.4
H6	C4	C5	C6	58.4	58.7
N1	C4	H6	C5	240.5	240.0
H6	C4	C5	H8	178.4	178.7
H6	C4	C5	H7	298.3	298.7
H6	C4	N1	H11	220.2	215.0
H8	C5	C4	C3	61.1	58.6
C4	C5	H8	C6	239.7	240.1
H8	C5	C4	H6	178.4	178.7
C4	C5	H8	H7	119.9	120.0
H8	C5	C6	N	299.1	294.7
C6	C5	H8	H7	240.1	239.9
H8	C5	C6	H10	59.1	54.5
H8	C5	C6	H9	179.1	174.9
H7	C5	C4	C3	181.0	178.6
C4	C5	H7	C6	120.3	119.8
H7	C5	C4	H6	298.3	298.7
C4	C5	H7	H8	240.1	240.0
H7	C5	C6	N	179.2	174.5
C6	C5	H7	H8	119.9	120.1
H7	C5	C6	H10	299.2	294.3
H7	C5	C6	H9	59.2	54.8
H10	C6	N	C1	1.0	6.7
C5	C6	H10	N	240.0	240.7
H10	C6	C5	H8	59.1	54.5
H10	C6	C5	H7	299.2	294.3
C5	C6	H10	H9	120.0	120.3
N	C6	H10	H9	240.0	239.6
H9	C6	N	C1	241.0	246.2
C5	C6	H9	N	120.0	119.3
H9	C6	C5	H8	179.1	174.9
H9	C6	C5	H7	59.2	54.8
C5	C6	H9	H10	240.0	239.7
N	C6	H9	H10	120.0	120.4
C11	C10	H13	C9	180.0	180.0
H13	C10	C9	H12	359.7	0.1
H16	C13	C8	C9	179.2	180.2
H16	C13	C12	C11	180.4	180.0
C8	C13	H16	C12	180.0	180.0
H16	C13	C12	H15	0.4	359.9
C1	C	H	H17	120.0	120.0
C1	C	H	H1	240.0	240.0
H17	C	H	H1	120.0	120.1
C1	C	H17	H	240.0	240.0
C1	C	H17	H1	120.0	120.0
H	C	H17	H1	240.0	239.9
C1	C	H1	H	120.0	120.0
C1	C	H1	H17	240.0	240.0
H	C	H1	H17	120.0	120.1
H14	C11	C10	C9	180.0	180.1
H14	C11	C10	H13	359.9	0.0
C13	C12	H15	C11	180.0	180.1
H15	C12	C11	H14	360.0	0.0
H15	C12	C13	H16	0.4	359.9
C3	C2	H3	H2	240.6	239.6
C3	C2	H2	H3	119.4	120.4
C4	C3	H5	C2	120.7	240.2
H5	C3	C2	H3	305.2	65.6
H5	C3	C2	H2	185.6	305.3
H5	C3	C4	H6	179.0	61.3
C4	C3	H5	H4	240.4	120.2
C4	C3	H4	C2	239.3	119.8
H4	C3	C2	H3	64.9	305.5
H4	C3	C2	H2	305.3	185.2
H4	C3	C4	H6	59.3	181.4
C4	C3	H4	H5	119.7	239.8
C8	C9	H12	C10	180.0	180.1
H12	C9	C10	H13	359.7	0.1