PDB Chemical Component T6Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T6Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C |
1.517 |
1.507 |
| C1 |
O |
1.229 |
1.213 |
| N |
C1 |
1.351 |
1.348 |
| C2 |
N |
1.460 |
1.471 |
| C3 |
C2 |
1.510 |
1.532 |
| N1 |
C3 |
1.466 |
1.469 |
| C4 |
N1 |
1.474 |
1.469 |
| C5 |
C4 |
1.498 |
1.508 |
| C6 |
C5 |
1.390 |
1.334 |
| C7 |
C6 |
1.414 |
1.385 |
| C8 |
C7 |
1.389 |
1.335 |
| CL |
C8 |
1.717 |
1.736 |
| C8 |
S |
1.716 |
1.759 |
| S |
C5 |
1.729 |
1.759 |
| N1 |
C9 |
1.467 |
1.469 |
| C9 |
C10 |
1.514 |
1.532 |
| C10 |
N |
1.465 |
1.471 |
| C4 |
H8 |
1.100 |
1.090 |
| C4 |
H7 |
1.100 |
1.089 |
| C6 |
H9 |
1.080 |
1.079 |
| C7 |
H10 |
1.080 |
1.081 |
| C10 |
H13 |
1.100 |
1.090 |
| C10 |
H14 |
1.100 |
1.090 |
| C |
H |
1.100 |
1.090 |
| C |
H2 |
1.100 |
1.090 |
| C |
H1 |
1.100 |
1.090 |
| C2 |
H3 |
1.100 |
1.090 |
| C2 |
H4 |
1.100 |
1.091 |
| C3 |
H5 |
1.100 |
1.090 |
| C3 |
H6 |
1.100 |
1.090 |
| C9 |
H11 |
1.100 |
1.089 |
| C9 |
H12 |
1.100 |
1.090 |
Bond Angles for T6Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
C1 |
C |
118.8 |
120.0 |
| C1 |
C |
H |
109.5 |
109.5 |
| C1 |
C |
H2 |
109.5 |
109.4 |
| C1 |
C |
H1 |
109.5 |
109.5 |
| N |
C1 |
O |
121.5 |
120.0 |
| C10 |
N |
C1 |
126.4 |
120.9 |
| N1 |
C3 |
C2 |
110.9 |
109.3 |
| C3 |
C2 |
H3 |
109.5 |
109.7 |
| C3 |
C2 |
H4 |
109.5 |
109.8 |
| C4 |
N1 |
C3 |
110.8 |
111.0 |
| C3 |
N1 |
C9 |
109.1 |
111.3 |
| N1 |
C3 |
H5 |
109.1 |
109.5 |
| N1 |
C3 |
H6 |
109.1 |
109.5 |
| C4 |
N1 |
C9 |
111.0 |
111.0 |
| C5 |
C4 |
H8 |
108.4 |
109.4 |
| C5 |
C4 |
H7 |
108.4 |
109.5 |
| C7 |
C6 |
H9 |
123.4 |
122.6 |
| C8 |
C7 |
H10 |
124.5 |
122.5 |
| N1 |
C9 |
C10 |
111.7 |
109.3 |
| N1 |
C9 |
H11 |
108.9 |
109.5 |
| N1 |
C9 |
H12 |
108.9 |
109.4 |
| C9 |
C10 |
H13 |
109.2 |
109.6 |
| C9 |
C10 |
H14 |
109.2 |
109.8 |
| N |
C10 |
H13 |
109.3 |
109.6 |
| N |
C10 |
H14 |
109.2 |
109.7 |
| H8 |
C4 |
H7 |
109.5 |
109.5 |
| H13 |
C10 |
H14 |
109.5 |
109.6 |
| H |
C |
H2 |
109.5 |
109.5 |
| H |
C |
H1 |
109.4 |
109.5 |
| H2 |
C |
H1 |
109.5 |
109.4 |
| H3 |
C2 |
H4 |
109.4 |
109.6 |
| H5 |
C3 |
H6 |
109.5 |
109.5 |
| H11 |
C9 |
H12 |
109.5 |
109.5 |
Torsion Angles for T6Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
C1 |
C |
O |
177.6 |
180.1 |
| C10 |
N |
C1 |
C |
4.1 |
180.0 |
| H |
C |
C1 |
H2 |
240.0 |
240.0 |
| H |
C |
C1 |
H1 |
120.0 |
120.1 |
| H2 |
C |
C1 |
H1 |
240.0 |
240.1 |
| N |
C1 |
O |
C |
182.4 |
179.9 |
| O |
C1 |
C |
H |
360.0 |
240.0 |
| O |
C1 |
C |
H2 |
120.0 |
360.0 |
| O |
C1 |
C |
H1 |
240.0 |
119.9 |
| C10 |
N |
C1 |
O |
181.7 |
0.0 |
| N |
C1 |
C |
H |
177.6 |
60.0 |
| N |
C1 |
C |
H2 |
297.6 |
180.0 |
| N |
C1 |
C |
H1 |
57.6 |
300.0 |
| C1 |
N |
C10 |
H13 |
117.4 |
350.9 |
| C1 |
N |
C10 |
H14 |
357.6 |
111.3 |
| N1 |
C3 |
C2 |
N |
60.0 |
53.8 |
| C2 |
N |
C10 |
H13 |
296.1 |
170.9 |
| C2 |
N |
C10 |
H14 |
176.3 |
291.3 |
| C4 |
N1 |
C3 |
C2 |
178.7 |
172.8 |
| C2 |
C3 |
N1 |
C9 |
301.2 |
296.9 |
| N1 |
C3 |
C2 |
H5 |
239.8 |
119.9 |
| N1 |
C3 |
C2 |
H6 |
120.2 |
240.0 |
| H3 |
C2 |
C3 |
H4 |
120.0 |
120.5 |
| N1 |
C3 |
C2 |
H3 |
300.1 |
294.1 |
| N1 |
C3 |
C2 |
H4 |
180.0 |
173.6 |
| C4 |
N1 |
C3 |
C9 |
237.5 |
235.8 |
| C3 |
N1 |
C9 |
C10 |
56.5 |
63.1 |
| C3 |
N1 |
C9 |
H11 |
176.9 |
183.1 |
| C3 |
N1 |
C9 |
H12 |
296.2 |
303.1 |
| H5 |
C3 |
N1 |
H6 |
119.6 |
239.9 |
| C3 |
N1 |
C4 |
C9 |
121.4 |
124.3 |
| C4 |
N1 |
C3 |
H5 |
58.5 |
292.7 |
| C4 |
N1 |
C3 |
H6 |
298.9 |
52.8 |
| C4 |
N1 |
C9 |
C10 |
178.9 |
187.2 |
| C4 |
N1 |
C9 |
H11 |
299.3 |
307.2 |
| C4 |
N1 |
C9 |
H12 |
58.6 |
67.3 |
| C5 |
C4 |
N1 |
C3 |
322.4 |
190.0 |
| C5 |
C4 |
N1 |
C9 |
201.0 |
65.7 |
| H8 |
C4 |
C5 |
H7 |
118.8 |
120.1 |
| C6 |
C5 |
C4 |
H8 |
350.5 |
330.1 |
| C6 |
C5 |
C4 |
H7 |
231.7 |
210.0 |
| C8 |
C7 |
C6 |
H9 |
190.8 |
180.0 |
| CL |
C8 |
C7 |
H10 |
350.9 |
0.0 |
| S |
C8 |
C7 |
H10 |
171.7 |
179.8 |
| S |
C5 |
C4 |
H8 |
171.0 |
149.7 |
| S |
C5 |
C4 |
H7 |
52.2 |
29.6 |
| C9 |
N1 |
C3 |
C2 |
301.2 |
296.9 |
| C4 |
N1 |
C9 |
C3 |
122.4 |
124.1 |
| C9 |
N1 |
C3 |
H5 |
181.0 |
56.8 |
| C9 |
N1 |
C3 |
H6 |
61.4 |
176.9 |
| N1 |
C9 |
C10 |
H13 |
64.6 |
186.5 |
| N1 |
C9 |
C10 |
H14 |
184.3 |
66.0 |
| H11 |
C9 |
N1 |
H12 |
240.7 |
239.9 |
| N1 |
C9 |
C10 |
H11 |
120.3 |
120.0 |
| N1 |
C9 |
C10 |
H12 |
239.7 |
240.1 |
| N |
C10 |
C9 |
H13 |
239.8 |
119.7 |
| N |
C10 |
C9 |
H14 |
120.1 |
240.2 |
| H13 |
C10 |
C9 |
H14 |
240.3 |
120.5 |
| N1 |
C9 |
C10 |
N |
304.5 |
306.2 |
| C9 |
C10 |
N |
H13 |
120.1 |
240.3 |
| C9 |
C10 |
N |
H14 |
239.9 |
119.9 |
| H13 |
C10 |
N |
H14 |
119.7 |
239.6 |
| H8 |
C4 |
N1 |
C3 |
83.0 |
310.0 |
| H8 |
C4 |
N1 |
C9 |
321.7 |
185.6 |
| C5 |
C4 |
H8 |
H7 |
241.9 |
239.9 |
| H7 |
C4 |
N1 |
C3 |
201.8 |
70.0 |
| H7 |
C4 |
N1 |
C9 |
80.4 |
305.7 |
| C5 |
C4 |
H7 |
H8 |
118.1 |
120.0 |
| H10 |
C7 |
C6 |
H9 |
10.8 |
360.0 |
| H13 |
C10 |
N |
C1 |
117.4 |
350.9 |
| C9 |
C10 |
H13 |
H14 |
119.5 |
239.5 |
| N |
C10 |
H13 |
H14 |
240.4 |
120.4 |
| H14 |
C10 |
N |
C1 |
357.6 |
111.3 |
| C9 |
C10 |
H14 |
H13 |
240.5 |
120.4 |
| N |
C10 |
H14 |
H13 |
119.6 |
239.6 |
| C1 |
C |
H |
H2 |
120.0 |
119.9 |
| C1 |
C |
H |
H1 |
240.0 |
240.0 |
| H2 |
C |
H |
H1 |
120.0 |
120.0 |
| C1 |
C |
H2 |
H |
240.0 |
240.0 |
| C1 |
C |
H2 |
H1 |
120.0 |
120.0 |
| H |
C |
H2 |
H1 |
240.0 |
239.9 |
| C1 |
C |
H1 |
H |
120.0 |
120.0 |
| C1 |
C |
H1 |
H2 |
240.0 |
240.1 |
| H |
C |
H1 |
H2 |
120.0 |
120.0 |
| C3 |
C2 |
H3 |
H4 |
239.9 |
239.4 |
| C3 |
C2 |
H4 |
H3 |
120.1 |
120.5 |
| N1 |
C3 |
H5 |
C2 |
121.3 |
240.2 |
| H5 |
C3 |
C2 |
H3 |
60.3 |
174.2 |
| H5 |
C3 |
C2 |
H4 |
300.2 |
53.7 |
| H5 |
C3 |
N1 |
C9 |
181.0 |
56.8 |
| N1 |
C3 |
H5 |
H6 |
240.7 |
120.1 |
| N1 |
C3 |
H6 |
C2 |
238.7 |
119.9 |
| H6 |
C3 |
C2 |
H3 |
179.8 |
54.1 |
| H6 |
C3 |
C2 |
H4 |
59.8 |
293.6 |
| H6 |
C3 |
N1 |
C9 |
61.4 |
176.9 |
| N1 |
C3 |
H6 |
H5 |
119.3 |
239.9 |
| N1 |
C9 |
H11 |
C10 |
237.9 |
240.1 |
| N1 |
C9 |
H11 |
H12 |
118.9 |
120.0 |
| H11 |
C9 |
C10 |
H13 |
304.3 |
66.5 |
| H11 |
C9 |
C10 |
H14 |
64.0 |
306.0 |
| N1 |
C9 |
H12 |
C10 |
122.0 |
119.8 |
| N1 |
C9 |
H12 |
H11 |
241.1 |
240.0 |
| H12 |
C9 |
C10 |
H13 |
184.9 |
306.4 |
| H12 |
C9 |
C10 |
H14 |
304.7 |
185.9 |