PDB Chemical Component T6V
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for T6V
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O01 |
C02 |
1.225 |
1.213 |
| C02 |
C03 |
1.510 |
1.507 |
| C02 |
N05 |
1.374 |
1.347 |
| C06 |
C07 |
1.393 |
1.388 |
| C07 |
C08 |
1.385 |
1.381 |
| C08 |
C09 |
1.378 |
1.383 |
| C09 |
C10 |
1.375 |
1.383 |
| C10 |
C11 |
1.386 |
1.381 |
| N05 |
C06 |
1.440 |
1.399 |
| N05 |
C12 |
1.459 |
1.465 |
| C12 |
C13 |
1.517 |
1.496 |
| C13 |
C14 |
1.321 |
1.304 |
| C14 |
S15 |
1.746 |
1.778 |
| S15 |
O16 |
1.439 |
1.421 |
| S15 |
O17 |
1.438 |
1.421 |
| S15 |
C18 |
1.781 |
1.840 |
| C06 |
C11 |
1.393 |
1.389 |
| C12 |
C18 |
1.541 |
1.550 |
| C10 |
H101 |
1.080 |
1.080 |
| C13 |
H131 |
1.080 |
1.080 |
| C03 |
H031 |
1.100 |
1.090 |
| C03 |
H032 |
1.100 |
1.090 |
| C03 |
H1 |
1.100 |
1.089 |
| C07 |
H071 |
1.080 |
1.080 |
| C08 |
H081 |
1.079 |
1.080 |
| C09 |
H091 |
1.080 |
1.080 |
| C11 |
H111 |
1.080 |
1.080 |
| C12 |
H121 |
1.100 |
1.090 |
| C14 |
H141 |
1.080 |
1.080 |
| C18 |
H182 |
1.100 |
1.090 |
| C18 |
H181 |
1.100 |
1.090 |
Bond Angles for T6V
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C03 |
C02 |
N05 |
117.9 |
120.0 |
| C02 |
C03 |
H031 |
109.5 |
109.5 |
| C02 |
C03 |
H032 |
109.4 |
109.5 |
| C02 |
C03 |
H1 |
109.5 |
109.5 |
| C02 |
N05 |
C06 |
122.2 |
120.0 |
| C02 |
N05 |
C12 |
119.4 |
120.0 |
| C06 |
C07 |
C08 |
120.0 |
120.0 |
| C07 |
C06 |
C11 |
119.0 |
119.8 |
| C06 |
C07 |
H071 |
120.0 |
120.0 |
| C07 |
C08 |
C09 |
120.6 |
120.1 |
| C08 |
C07 |
H071 |
120.0 |
120.0 |
| C07 |
C08 |
H081 |
119.7 |
120.0 |
| C09 |
C08 |
H081 |
119.7 |
119.9 |
| C08 |
C09 |
H091 |
120.1 |
120.0 |
| C09 |
C10 |
C11 |
120.5 |
120.1 |
| C09 |
C10 |
H101 |
119.7 |
120.0 |
| C10 |
C11 |
C06 |
120.2 |
119.9 |
| C11 |
C10 |
H101 |
119.8 |
120.0 |
| C10 |
C11 |
H111 |
119.9 |
120.0 |
| N05 |
C12 |
H121 |
109.4 |
109.4 |
| C12 |
C13 |
C14 |
112.0 |
119.2 |
| C12 |
C13 |
H131 |
124.0 |
120.4 |
| C13 |
C14 |
S15 |
109.9 |
107.5 |
| C14 |
C13 |
H131 |
124.0 |
120.5 |
| C13 |
C14 |
H141 |
125.0 |
126.2 |
| C14 |
S15 |
O16 |
110.2 |
105.6 |
| C14 |
S15 |
O17 |
110.5 |
105.6 |
| C14 |
S15 |
C18 |
94.6 |
96.9 |
| S15 |
C14 |
H141 |
125.1 |
126.3 |
| S15 |
C18 |
H182 |
110.5 |
111.2 |
| S15 |
C18 |
H181 |
110.5 |
111.6 |
| C06 |
C11 |
H111 |
119.9 |
120.0 |
| C18 |
C12 |
H121 |
108.4 |
109.4 |
| C12 |
C18 |
H182 |
110.5 |
111.3 |
| C12 |
C18 |
H181 |
110.5 |
111.3 |
| H031 |
C03 |
H032 |
109.5 |
109.5 |
| H031 |
C03 |
H1 |
109.5 |
109.4 |
| H032 |
C03 |
H1 |
109.5 |
109.5 |
| H182 |
C18 |
H181 |
109.5 |
111.2 |
Torsion Angles for T6V
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O01 |
C02 |
C03 |
H031 |
360.0 |
183.8 |
| O01 |
C02 |
C03 |
H032 |
120.0 |
303.8 |
| O01 |
C02 |
C03 |
H1 |
240.0 |
63.8 |
| C03 |
C02 |
N05 |
C06 |
12.5 |
185.4 |
| C03 |
C02 |
N05 |
C12 |
191.9 |
5.4 |
| H031 |
C03 |
C02 |
H032 |
240.0 |
240.0 |
| H031 |
C03 |
C02 |
H1 |
120.0 |
120.0 |
| H032 |
C03 |
C02 |
H1 |
240.0 |
240.0 |
| N05 |
C02 |
C03 |
H031 |
179.3 |
3.8 |
| N05 |
C02 |
C03 |
H032 |
299.4 |
123.8 |
| N05 |
C02 |
C03 |
H1 |
59.3 |
243.8 |
| C02 |
N05 |
C12 |
H121 |
333.9 |
303.3 |
| C02 |
N05 |
C06 |
C07 |
281.3 |
96.8 |
| C06 |
C07 |
C08 |
C09 |
1.3 |
359.3 |
| C08 |
C07 |
C06 |
H071 |
180.0 |
180.5 |
| C06 |
C07 |
C08 |
H081 |
181.3 |
179.9 |
| C10 |
C11 |
C06 |
C07 |
1.3 |
360.0 |
| C07 |
C06 |
C11 |
H111 |
181.3 |
180.0 |
| C08 |
C07 |
C06 |
C11 |
358.1 |
0.5 |
| C06 |
C07 |
C08 |
H071 |
180.0 |
179.5 |
| C09 |
C08 |
C07 |
H081 |
180.0 |
179.3 |
| C07 |
C08 |
C09 |
H091 |
179.9 |
180.5 |
| C09 |
C08 |
C07 |
H071 |
181.3 |
179.8 |
| C07 |
C08 |
C09 |
H081 |
180.0 |
180.7 |
| C08 |
C09 |
C10 |
C11 |
359.4 |
0.0 |
| C08 |
C09 |
C10 |
H101 |
179.4 |
179.7 |
| C09 |
C10 |
C11 |
C06 |
360.0 |
359.8 |
| C11 |
C10 |
C09 |
H101 |
180.0 |
180.3 |
| C09 |
C10 |
C11 |
H111 |
179.9 |
179.7 |
| C07 |
C06 |
C11 |
C10 |
1.3 |
360.0 |
| C09 |
C10 |
C11 |
H101 |
180.0 |
179.7 |
| C06 |
C11 |
C10 |
H111 |
180.0 |
180.1 |
| C02 |
N05 |
C06 |
C12 |
179.4 |
180.0 |
| N05 |
C06 |
C07 |
H071 |
1.8 |
359.5 |
| N05 |
C06 |
C11 |
H111 |
357.7 |
0.6 |
| C02 |
N05 |
C12 |
C06 |
180.6 |
180.0 |
| N05 |
C12 |
C13 |
H131 |
343.2 |
281.2 |
| C18 |
C12 |
N05 |
H121 |
238.6 |
240.2 |
| N05 |
C12 |
C18 |
H182 |
92.6 |
22.6 |
| N05 |
C12 |
C18 |
H181 |
331.3 |
147.3 |
| C12 |
C13 |
C14 |
S15 |
326.3 |
0.1 |
| C14 |
C13 |
C12 |
H131 |
180.0 |
180.3 |
| C12 |
C13 |
C14 |
H141 |
146.3 |
180.0 |
| C12 |
C13 |
C14 |
H131 |
180.0 |
179.7 |
| C13 |
C14 |
S15 |
O16 |
260.0 |
259.5 |
| C13 |
C14 |
S15 |
O17 |
128.5 |
129.1 |
| C13 |
C14 |
S15 |
C18 |
14.2 |
14.7 |
| S15 |
C14 |
C13 |
H141 |
180.0 |
180.0 |
| S15 |
C14 |
C13 |
H131 |
146.3 |
180.3 |
| C13 |
C14 |
S15 |
H141 |
180.0 |
180.0 |
| C14 |
S15 |
C18 |
H182 |
128.0 |
219.6 |
| C14 |
S15 |
C18 |
H181 |
249.3 |
94.9 |
| C14 |
S15 |
O16 |
O17 |
232.3 |
239.9 |
| C14 |
S15 |
O16 |
C18 |
103.4 |
104.3 |
| O16 |
S15 |
C14 |
H141 |
80.0 |
79.6 |
| O16 |
S15 |
C18 |
H182 |
241.7 |
329.6 |
| O16 |
S15 |
C18 |
H181 |
3.0 |
204.8 |
| C14 |
S15 |
O17 |
O16 |
127.6 |
120.1 |
| C14 |
S15 |
O17 |
C18 |
256.5 |
255.9 |
| O17 |
S15 |
C14 |
H141 |
308.5 |
309.2 |
| O17 |
S15 |
C18 |
H182 |
14.1 |
109.9 |
| O17 |
S15 |
C18 |
H181 |
135.3 |
345.1 |
| C14 |
S15 |
C18 |
O16 |
246.3 |
250.1 |
| C14 |
S15 |
C18 |
O17 |
114.0 |
109.7 |
| C18 |
S15 |
C14 |
H141 |
194.2 |
194.7 |
| S15 |
C18 |
C12 |
H121 |
89.9 |
145.4 |
| C12 |
C18 |
S15 |
H182 |
240.7 |
117.5 |
| C12 |
C18 |
S15 |
H181 |
119.4 |
242.3 |
| H182 |
C18 |
S15 |
H181 |
238.7 |
124.8 |
| C02 |
N05 |
C06 |
C11 |
105.0 |
276.2 |
| C11 |
C06 |
C07 |
C08 |
358.1 |
0.5 |
| C11 |
C06 |
C07 |
H071 |
178.1 |
180.0 |
| C06 |
C11 |
C10 |
H101 |
180.0 |
180.1 |
| C10 |
C11 |
C06 |
H111 |
180.0 |
179.9 |
| C02 |
N05 |
C12 |
C18 |
212.5 |
183.5 |
| N05 |
C12 |
C18 |
H121 |
122.0 |
119.8 |
| C18 |
C12 |
C13 |
C14 |
39.6 |
341.4 |
| C18 |
C12 |
C13 |
H131 |
219.6 |
161.1 |
| C14 |
S15 |
C18 |
C12 |
8.7 |
337.2 |
| S15 |
C18 |
C12 |
H182 |
119.3 |
242.6 |
| S15 |
C18 |
C12 |
H181 |
240.6 |
117.9 |
| H182 |
C18 |
C12 |
H181 |
121.3 |
235.3 |
| C09 |
C10 |
H101 |
C11 |
180.0 |
180.3 |
| H101 |
C10 |
C11 |
C06 |
180.0 |
180.1 |
| H101 |
C10 |
C11 |
H111 |
360.0 |
0.0 |
| C12 |
C13 |
H131 |
C14 |
180.0 |
180.3 |
| H131 |
C13 |
C14 |
S15 |
146.3 |
180.3 |
| H131 |
C13 |
C14 |
H141 |
326.3 |
0.3 |
| H031 |
C03 |
C02 |
N05 |
179.3 |
3.8 |
| C02 |
C03 |
H031 |
H032 |
120.0 |
120.0 |
| C02 |
C03 |
H031 |
H1 |
240.0 |
240.0 |
| H032 |
C03 |
H031 |
H1 |
120.0 |
119.9 |
| H032 |
C03 |
C02 |
N05 |
299.4 |
123.8 |
| C02 |
C03 |
H032 |
H031 |
240.0 |
240.0 |
| C02 |
C03 |
H032 |
H1 |
120.0 |
120.0 |
| H031 |
C03 |
H032 |
H1 |
240.0 |
240.1 |
| H1 |
C03 |
C02 |
N05 |
59.3 |
243.8 |
| C02 |
C03 |
H1 |
H031 |
120.0 |
120.0 |
| C02 |
C03 |
H1 |
H032 |
240.0 |
240.0 |
| H031 |
C03 |
H1 |
H032 |
120.0 |
119.9 |
| C06 |
C07 |
H071 |
C08 |
180.0 |
180.5 |
| H071 |
C07 |
C06 |
C11 |
178.1 |
180.0 |
| H071 |
C07 |
C08 |
C09 |
181.3 |
179.8 |
| H071 |
C07 |
C08 |
H081 |
1.3 |
0.4 |
| C07 |
C08 |
H081 |
C09 |
180.0 |
179.3 |
| H081 |
C08 |
C07 |
H071 |
1.3 |
0.4 |
| H081 |
C08 |
C09 |
H091 |
359.9 |
359.8 |
| H091 |
C09 |
C08 |
H081 |
359.9 |
359.8 |
| H091 |
C09 |
C10 |
C11 |
179.4 |
180.0 |
| H091 |
C09 |
C10 |
H101 |
359.4 |
359.7 |
| C10 |
C11 |
H111 |
C06 |
180.0 |
180.1 |
| H111 |
C11 |
C10 |
H101 |
360.0 |
0.0 |
| H121 |
C12 |
C13 |
C14 |
283.8 |
221.3 |
| H121 |
C12 |
C13 |
H131 |
103.8 |
41.0 |
| H121 |
C12 |
C18 |
H182 |
330.6 |
262.8 |
| H121 |
C12 |
C18 |
H181 |
209.3 |
27.5 |
| C13 |
C14 |
H141 |
S15 |
180.0 |
180.1 |
| H141 |
C14 |
C13 |
H131 |
326.3 |
0.3 |
| H141 |
C14 |
S15 |
O16 |
80.0 |
79.6 |
| H141 |
C14 |
S15 |
O17 |
308.5 |
309.2 |
| H141 |
C14 |
S15 |
C18 |
194.2 |
194.7 |
| S15 |
C18 |
H182 |
H181 |
121.9 |
235.0 |
| H182 |
C18 |
C12 |
H121 |
330.6 |
262.8 |
| C12 |
C18 |
H182 |
H181 |
238.1 |
124.8 |
| S15 |
C18 |
H181 |
H182 |
238.1 |
124.8 |
| H181 |
C18 |
C12 |
H121 |
209.3 |
27.5 |
| C12 |
C18 |
H181 |
H182 |
121.9 |
235.2 |