Atom Nomenclature for T6V

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T6V

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C02 C3
C03 C4
C06 C5
C07 C6
C08 C7
C09 C8
C11 C9
C12 C10
C14 C11
C18 C12
N05 N1
O01 O1
O16 O2
O17 O3
S15 S1
H101 H1
H131 H2
H031 H3
H032 H4
H1 H5
H071 H6
H081 H7
H091 H8
H111 H9
H121 H10
H141 H11
H182 H12
H181 H13