Atom Nomenclature for T6Q

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for T6Q

Atom Name (V3) Atom Name (V2)
C01 C01
N02 N02
C03 C03
N04 N04
C05 C05
C06 C06
C07 C07
C08 C08
N09 N09
C10 C10
N11 N11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
N17 N17
C18 C18
C19 C19
C20 C20
N21 N21
C22 C22
C23 C23
O24 O24
C25 C25
C26 C26
C27 C27
N28 N28
C29 C29
C30 C30
C31 C31
N32 N32
S33 S33
H011 H011
H012 H012
H013 H013
H02 H02
H061 H061
H062 H062
H063 H063
H11 H11
H13 H13
H27 H27
H14 H14
H15 H15
H181 H181
H182 H182
H261 H261
H262 H262
H191 H191
H192 H192
H201 H201
H202 H202
H251 H251
H252 H252
H231 H231
H232 H232
H233 H233
H29 H29